Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p33160 Brassica napus HOM05D004383 ORTHO05D005050 5.7e-74 280.8 138 100.0
BolC3t15641H Brassica oleracea HOM05D004383 ORTHO05D005050 2.9e-30 135.6 64 100.0
BcaB01g06278 Brassica carinata HOM05D004383 ORTHO05D005050 3.0e-14 82.4 41 92.7
CARHR202520 Cardamine hirsuta HOM05D004383 ORTHO05D005050 3.0e-14 82.4 41 92.7
Thhalv10014802m.g Eutrema salsugineum HOM05D004383 ORTHO05D005050 3.0e-14 82.4 41 92.7
BcaB01g05499 Brassica carinata HOM05D004383 ORTHO05D005050 5.0e-14 81.6 41 90.2
BcaB05g21506 Brassica carinata HOM05D004383 ORTHO05D005050 6.6e-14 81.3 41 90.2
A02p00660 Brassica napus HOM05D004383 ORTHO05D005050 1.1e-13 80.5 41 90.2
A03p04760 Brassica napus HOM05D004383 ORTHO05D005050 1.1e-13 80.5 41 90.2
BraA03t09816Z Brassica rapa HOM05D004383 ORTHO05D005050 1.1e-13 80.5 41 90.2
Sp6g32680 Schrenkiella parvula HOM05D004383 ORTHO05D005050 1.1e-13 80.5 41 90.2
BcaC03g13332 Brassica carinata HOM05D004383 ORTHO05D005050 1.5e-13 80.1 41 90.2
C02p04660 Brassica napus HOM05D004383 ORTHO05D005050 1.5e-13 80.1 41 90.2
BolC2t06425H Brassica oleracea HOM05D004383 ORTHO05D003478 1.5e-13 80.1 41 90.2
AL6G21360 Arabidopsis lyrata HOM05D004383 ORTHO05D005050 3.3e-13 79.0 38 94.7
AT5G10780 Arabidopsis thaliana HOM05D004383 ORTHO05D005050 3.3e-13 79.0 38 94.7
BolC3t13057H Brassica oleracea HOM05D004383 ORTHO05D005050 3.3e-13 79.0 41 90.2
BraA02t05050Z Brassica rapa HOM05D004383 ORTHO05D005050 3.3e-13 79.0 41 87.8
Carub.0006s0928 Capsella rubella HOM05D004383 ORTHO05D005050 3.3e-13 79.0 38 94.7
THA.LOC104799028 Tarenaya hassleriana HOM05D004383 ORTHO05D005050 9.5e-13 77.4 41 82.9
THA.LOC104824960 Tarenaya hassleriana HOM05D004383 ORTHO05D005050 9.5e-13 77.4 41 82.9
Aa31LG3G16320 Aethionema arabicum HOM05D004383 ORTHO05D005050 2.1e-12 76.3 41 85.4
Potri.006G266300 Populus trichocarpa HOM05D004383 ORTHO05D005050 4.0e-11 72.0 38 84.2
Potri.018G016800 Populus trichocarpa HOM05D004383 ORTHO05D005050 4.0e-11 72.0 38 84.2
Sabra18G0020200 Salix brachista HOM05D004383 ORTHO05D005050 4.0e-11 72.0 38 84.2
SGA_v2.0_scaffold4G02162 Striga asiatica HOM05D004383 ORTHO05D005050 1.2e-10 70.5 38 84.2
COL.COLO4_18979 Corchorus olitorius HOM05D002641 ORTHO05D005050 1.5e-10 70.1 55 63.6
Duzib168G1681 Durio zibethinus HOM05D004383 ORTHO05D005050 1.5e-10 70.1 38 81.6
Manes.16G131700 Manihot esculenta HOM05D004383 ORTHO05D005050 1.5e-10 70.1 38 81.6
Peaxi162Scf00045g01943 Petunia axillaris HOM05D004383 ORTHO05D005050 1.5e-10 70.1 38 84.2
Gohir.A05G061400 Gossypium hirsutum HOM05D004383 ORTHO05D005050 2.0e-10 69.7 38 78.9
Gohir.D06G105600 Gossypium hirsutum HOM05D004383 ORTHO05D005050 2.0e-10 69.7 38 81.6
Gorai.009G064600 Gossypium raimondii HOM05D004383 ORTHO05D005050 2.0e-10 69.7 38 78.9
Sabra06G0208900 Salix brachista HOM05D004383 ORTHO05D005050 2.0e-10 69.7 38 81.6
Thecc.09G012700 Theobroma cacao HOM05D004383 ORTHO05D005050 2.0e-10 69.7 38 81.6
TWI34G1410 Tripterygium wilfordii HOM05D004383 ORTHO05D005050 2.0e-10 69.7 38 81.6
Cpa.g.sc148.37 Carica papaya HOM05D004383 ORTHO05D005050 3.4e-10 68.9 38 78.9
Duzib187G0841 Durio zibethinus HOM05D004383 ORTHO05D005050 3.4e-10 68.9 38 81.6
C03p05470 Brassica napus HOM05D004383 ORTHO05D005050 4.4e-10 68.6 34 91.2
Gorai.010G120200 Gossypium raimondii HOM05D004383 ORTHO05D005050 4.4e-10 68.6 38 78.9
Manes.03G007300 Manihot esculenta HOM05D004383 ORTHO05D005050 4.4e-10 68.6 38 78.9
Ciclev10009603m.g Citrus clementina HOM05D004383 ORTHO05D005050 5.8e-10 68.2 38 76.3
Oeu021906.1 Olea europaea HOM05D004383 ORTHO05D005050 5.8e-10 68.2 38 78.9
Migut.E01443 Erythranthe guttata HOM05D004383 ORTHO05D005050 7.5e-10 67.8 38 81.6
Nitab4.5_0000264g0060 Nicotiana tabacum HOM05D004383 ORTHO05D005050 7.5e-10 67.8 38 84.2
BcaB07g33518 Brassica carinata HOM05D001184 ORTHO05D005050 9.8e-10 67.4 47 72.3
Cc00_g24580 Coffea canephora HOM05D004383 ORTHO05D005050 9.8e-10 67.4 38 76.3
FAN21G1236 Fragaria x ananassa HOM05D004383 ORTHO05D005050 9.8e-10 67.4 59 55.9
TWI32G1179 Tripterygium wilfordii HOM05D004383 ORTHO05D005050 9.8e-10 67.4 38 81.6
SGA_v2.0_scaffold169G38599 Striga asiatica HOM05D004383 ORTHO05D005050 1.3e-09 67.0 38 78.9
MSTRG.13961 Avicennia marina HOM05D004383 ORTHO05D005050 1.7e-09 66.6 38 78.9
Haze_21384 Corylus avellana HOM05D004383 ORTHO05D005050 1.7e-09 66.6 38 78.9
Nitab4.5_0001362g0040 Nicotiana tabacum HOM05D004383 ORTHO05D005050 1.7e-09 66.6 38 81.6
Oeu048647.1 Olea europaea HOM05D004383 ORTHO05D005050 1.7e-09 66.6 43 74.4
MD15G1042900 Malus domestica HOM05D004383 ORTHO05D005050 2.9e-09 65.9 38 76.3
Prupe.1G396200 Prunus persica HOM05D004383 ORTHO05D005050 2.9e-09 65.9 47 66.0
CANSAT64G0435 Cannabis sativa HOM05D004383 ORTHO05D005050 3.7e-09 65.5 38 76.3
Migut.A00383 Erythranthe guttata HOM05D004383 ORTHO05D005050 3.7e-09 65.5 38 76.3
SalBow8G1520 Salvia bowleyana HOM05D004383 ORTHO05D005050 3.7e-09 65.5 38 76.3
Gohir.D05G063900 Gossypium hirsutum HOM05D004383 ORTHO05D005050 4.9e-09 65.1 38 73.7
Oeu010290.1 Olea europaea HOM05D004383 ORTHO05D005050 4.9e-09 65.1 43 67.4
CiPaw.07G231900 Carya illinoinensis HOM05D004383 ORTHO05D005050 6.4e-09 64.7 38 78.9
Sopen08g002600 Solanum pennellii HOM05D004383 ORTHO05D005050 6.4e-09 64.7 38 78.9
PGSC0003DMG400026285 Solanum tuberosum HOM05D004383 ORTHO05D005050 6.4e-09 64.7 38 78.9
Dinv01903 Davidia involucrata HOM05D004383 ORTHO05D005050 1.4e-08 63.5 38 78.9
MD08G1052600 Malus domestica HOM05D004383 ORTHO05D005050 1.4e-08 63.5 38 73.7
PGR044G2662 Punica granatum HOM05D004383 ORTHO05D005050 1.4e-08 63.5 38 71.1
arahy.Tifrunner.gnm1.ann1.76P32W Arachis hypogaea HOM05D004383 ORTHO05D005050 1.9e-08 63.2 58 56.9
arahy.Tifrunner.gnm1.ann1.S5PPFL Arachis hypogaea HOM05D004383 ORTHO05D005050 1.9e-08 63.2 39 76.9
arahy.Tifrunner.gnm1.ann1.W5C21C Arachis hypogaea HOM05D004383 ORTHO05D005050 1.9e-08 63.2 39 76.9
CAN.G285.20 Capsicum annuum HOM05D004383 ORTHO05D005050 1.9e-08 63.2 38 76.3
CSS0047262 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 2.4e-08 62.8 38 73.7
EL10Ac2g02480 Beta vulgaris HOM05D004383 ORTHO05D005050 3.2e-08 62.4 38 73.7
CiPaw.08G004800 Carya illinoinensis HOM05D004383 ORTHO05D005050 3.2e-08 62.4 38 73.7
Eucgr.C04036 Eucalyptus grandis HOM05D004383 ORTHO05D005050 4.1e-08 62.0 38 71.1
FvH4_3g24420 Fragaria vesca HOM05D004383 ORTHO05D005050 4.1e-08 62.0 38 71.1
FAN16G3501 Fragaria x ananassa HOM05D004383 ORTHO05D005050 4.1e-08 62.0 38 71.1
Dinv10290 Davidia involucrata HOM05D004383 ORTHO05D005050 5.4e-08 61.6 38 76.3
Solyc08g006650.3 Solanum lycopersicum HOM05D004383 ORTHO05D005050 5.4e-08 61.6 38 76.3
Hma1.2p1_0355F.1_g133920 Hydrangea macrophylla HOM05D004383 ORTHO05D005050 7.1e-08 61.2 39 76.9
unitig_32.g11121 Utricularia gibba HOM05D004383 ORTHO05D005050 7.1e-08 61.2 38 73.7
arahy.Tifrunner.gnm1.ann1.90HH72 Arachis hypogaea HOM05D004383 ORTHO05D005050 9.2e-08 60.8 39 74.4
AUR62024788 Chenopodium quinoa HOM05D004383 ORTHO05D005050 9.2e-08 60.8 38 68.4
RcHm_v2.0_Chr6g0299241 Rosa chinensis HOM05D004383 ORTHO05D005050 9.2e-08 60.8 38 68.4
GSVIVG01035992001 Vitis vinifera HOM05D004383 ORTHO05D005050 9.2e-08 60.8 38 76.3
Lalb_Chr24g0401921 Lupinus albus HOM05D004383 ORTHO05D005050 1.2e-07 60.5 40 70.0
ClCG05G016150 Citrullus lanatus HOM05D004383 ORTHO05D005050 1.6e-07 60.1 38 71.1
Ah.12g060630 Amaranthus hybridus HOM05D004383 ORTHO05D005050 2.1e-07 59.7 38 65.8
CSS0026414 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 2.1e-07 59.7 38 73.7
AUR62032433 Chenopodium quinoa HOM05D004383 ORTHO05D005050 2.1e-07 59.7 38 65.8
Ca_13075_v3 Cicer arietinum L. HOM05D004383 ORTHO05D005050 2.1e-07 59.7 39 79.5
QL02p018464 Quercus lobata HOM05D004383 ORTHO05D005050 2.1e-07 59.7 38 71.1
Atru.chr7.2584 Acer truncatum HOM05D004383 ORTHO05D005050 2.7e-07 59.3 38 71.1
CSS0025027 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 2.7e-07 59.3 38 73.7
ECA238G1890 Erigeron canadensis HOM05D004383 ORTHO05D005050 2.7e-07 59.3 38 71.1
Lsat_1_v5_gn_8_16540 Lactuca sativa HOM05D004383 ORTHO05D005050 2.7e-07 59.3 38 71.1
vmacro11269 Vaccinium macrocarpon HOM05D004383 ORTHO05D005050 2.7e-07 59.3 38 73.7
Medtr1g013660 Medicago truncatula HOM05D004383 ORTHO05D005050 3.5e-07 58.9 39 76.9
MELO3C016948.2 Cucumis melo HOM05D004383 ORTHO05D005050 7.8e-07 57.8 38 68.4
Sed0012000 Sechium edule HOM05D004383 ORTHO05D005050 1.0e-06 57.4 38 65.8
Hund25610 Selenicereus undatus HOM05D004383 ORTHO05D005050 1.0e-06 57.4 39 66.7
vmacro05117 Vaccinium macrocarpon HOM05D004383 ORTHO05D005050 1.0e-06 57.4 41 65.9
Sed0009310 Sechium edule HOM05D004383 ORTHO05D005050 1.3e-06 57.0 38 63.2
TPR.G38877 Trifolium pratense HOM05D004383 ORTHO05D005050 1.7e-06 56.6 39 74.4
Lj7A737G42 Lonicera japonica HOM05D004383 ORTHO05D005050 3.0e-06 55.8 41 68.3
Actinidia14139 Actinidia chinensis HOM05D004383 ORTHO05D005050 3.9e-06 55.5 38 71.1
CsaV3_4G036420 Cucumis sativus L. HOM05D004383 ORTHO05D005050 3.9e-06 55.5 38 65.8
DCAR_003054 Daucus carota HOM05D004383 ORTHO05D005050 5.1e-06 55.1 38 73.7
Rhsim07G0166500 Rhododendron simsii HOM05D004383 ORTHO05D005050 5.1e-06 55.1 38 68.4
Glyma.14G103800 Glycine max HOM05D004383 ORTHO05D005050 8.6e-06 54.3 39 71.8
Psat6g025120 Pisum sativum HOM05D004383 ORTHO05D005050 8.6e-06 54.3 39 71.8


User provided reference genes

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