Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p33040 Brassica napus HOM05D006199 ORTHO05D006558 6.0e-247 857.1 435 100.0
BcaC01g04861 Brassica carinata HOM05D006199 ORTHO05D006558 1.3e-220 769.6 394 99.5
BolC3t15631H Brassica oleracea HOM05D006199 ORTHO05D006558 3.7e-220 768.1 394 99.0
BraA03t11952Z Brassica rapa HOM05D006199 ORTHO05D006558 4.2e-216 754.6 397 97.2
A03p27410 Brassica napus HOM05D006199 ORTHO05D006558 1.6e-215 752.7 397 97.5
Sp4g00170 Schrenkiella parvula HOM05D006199 ORTHO05D006558 4.3e-176 621.7 402 83.6
Thhalv10000193m.g Eutrema salsugineum HOM05D006199 ORTHO05D006558 4.7e-175 618.2 402 83.3
AT2G20980 Arabidopsis thaliana HOM05D006199 ORTHO05D006558 4.0e-174 615.1 407 82.8
Carub.0004s0005 Capsella rubella HOM05D006199 ORTHO05D006558 1.6e-162 576.6 399 78.4
BcaB07g29803 Brassica carinata HOM05D006199 ORTHO05D006558 2.1e-162 576.2 413 80.9
AL4G10110 Arabidopsis lyrata HOM05D006199 ORTHO05D006558 4.6e-162 575.1 403 78.7
CARHR111860 Cardamine hirsuta HOM05D006199 ORTHO05D006558 1.7e-153 546.6 370 80.8
Aa31LG7G15660 Aethionema arabicum HOM05D006199 ORTHO05D006558 5.4e-147 525.0 435 69.0
THA.LOC104807811 Tarenaya hassleriana HOM05D006199 ORTHO05D006558 4.9e-124 448.7 399 63.9
Sabra09G0104300 Salix brachista HOM05D006199 ORTHO05D006558 1.5e-117 427.2 421 55.6
Potri.009G134500 Populus trichocarpa HOM05D006199 ORTHO05D006558 1.7e-116 423.7 420 55.2
Cfa005236 Carpinus fangiana HOM05D006199 ORTHO05D006558 2.2e-116 423.3 414 57.0
QL11p050170 Quercus lobata HOM05D006199 ORTHO05D006558 3.0e-113 412.9 420 55.2
CANSAT25G2535 Cannabis sativa HOM05D006199 ORTHO05D006558 1.3e-111 407.5 416 54.3
CiPaw.05G081500 Carya illinoinensis HOM05D006199 ORTHO05D006558 1.3e-111 407.5 415 55.2
TWI75G1548 Tripterygium wilfordii HOM05D006199 ORTHO05D006558 2.4e-110 403.3 410 54.6
PGR142G1980 Punica granatum HOM05D006199 ORTHO05D006558 1.6e-106 390.6 431 51.0
MD10G1095100 Malus domestica HOM05D006199 ORTHO05D006558 4.7e-106 389.0 413 52.8
RcHm_v2.0_Chr6g0251921 Rosa chinensis HOM05D006199 ORTHO05D006558 1.8e-105 387.1 419 53.2
GSVIVG01024030001 Vitis vinifera HOM05D006199 ORTHO05D006558 2.3e-105 386.7 331 61.0
Gorai.002G197400 Gossypium raimondii HOM05D006199 ORTHO05D006558 5.1e-105 385.6 385 55.1
Dinv41943 Davidia involucrata HOM05D006199 ORTHO05D006558 1.1e-104 384.4 337 60.2
Lj5A179T83 Lonicera japonica HOM05D006199 ORTHO05D006558 2.6e-104 383.3 420 53.8
CAN.G588.74 Capsicum annuum HOM05D006199 ORTHO05D006558 3.3e-104 382.9 418 51.7
ClCG02G011890 Citrullus lanatus HOM05D006199 ORTHO05D006558 3.3e-104 382.9 414 52.9
Duzib132G0247 Durio zibethinus HOM05D006199 ORTHO05D006558 4.4e-104 382.5 385 56.1
Lj1g0009253 Lotus japonicus HOM05D006199 ORTHO05D006558 4.4e-104 382.5 421 52.5
Eucgr.I01413 Eucalyptus grandis HOM05D006199 ORTHO05D006558 5.7e-104 382.1 420 51.9
Phvul.009G119500 Phaseolus vulgaris HOM05D006199 ORTHO05D006558 1.7e-103 380.6 410 53.7
Thecc.02G060900 Theobroma cacao HOM05D006199 ORTHO05D006558 1.7e-103 380.6 369 56.4
CsaV3_2G016060 Cucumis sativus L. HOM05D006199 ORTHO05D006558 2.8e-103 379.8 407 53.1
Nn5g30772 Nelumbo nucifera HOM05D006199 ORTHO05D006558 2.8e-103 379.8 409 54.0
FvH4_2g01260 Fragaria vesca HOM05D006199 ORTHO05D006558 2.4e-102 376.7 425 51.5
FAN20G1063 Fragaria x ananassa HOM05D006199 ORTHO05D006558 2.4e-102 376.7 418 51.2
Gohir.A01G168100 Gossypium hirsutum HOM05D006199 ORTHO05D006558 2.4e-102 376.7 383 53.8
Glyma.04G003800 Glycine max HOM05D006199 ORTHO05D006558 5.3e-102 375.6 412 52.7
Manes.04G075600 Manihot esculenta HOM05D006199 ORTHO05D006558 5.3e-102 375.6 361 54.6
Solyc01g111550.3 Solanum lycopersicum HOM05D006199 ORTHO05D006558 7.0e-102 375.2 419 51.1
Sopen01g053590 Solanum pennellii HOM05D006199 ORTHO05D006558 1.2e-101 374.4 419 51.6
arahy.Tifrunner.gnm1.ann1.H9ZTXG Arachis hypogaea HOM05D006199 ORTHO05D006558 1.0e-100 371.3 419 51.8
Ciclev10028644m.g Citrus clementina HOM05D006199 ORTHO05D006558 1.7e-100 370.5 414 51.2
VMungo1309G0102 Vigna mungo HOM05D006199 ORTHO05D006558 6.5e-100 368.6 412 52.4
Nitab4.5_0005853g0010 Nicotiana tabacum HOM05D006199 ORTHO05D006558 3.2e-99 366.3 422 50.9
Sed0003263 Sechium edule HOM05D006199 ORTHO05D006558 1.6e-98 364.0 412 51.0
MSTRG.19995 Avicennia marina HOM05D006199 ORTHO05D006558 1.0e-97 361.3 401 50.6
Rhsim11G0191800 Rhododendron simsii HOM05D006199 ORTHO05D006558 3.0e-97 359.8 412 49.8
Medtr3g117880 Medicago truncatula HOM05D006199 ORTHO05D006558 1.1e-96 357.8 417 50.8
TAR628G1195 Trochodendron aralioides HOM05D006199 ORTHO05D006558 5.7e-96 355.5 412 51.0
SHI05731 Sapria himalayana HOM05D006199 ORTHO05D006558 2.2e-95 353.6 339 55.2
Haze_02147 Corylus avellana HOM05D006199 ORTHO05D006558 2.8e-95 353.2 476 47.1
EL10Ac9g21386 Beta vulgaris HOM05D006199 ORTHO05D006558 3.7e-95 352.8 411 47.7
Migut.B00085 Erythranthe guttata HOM05D006199 ORTHO05D006558 1.4e-94 350.9 399 50.1
Gohir.D01G159100 Gossypium hirsutum HOM05D006199 ORTHO05D006558 1.4e-94 350.9 317 57.4
SalBow1G2578 Salvia bowleyana HOM05D006199 ORTHO05D006558 1.8e-94 350.5 404 50.2
TPR.G38477 Trifolium pratense HOM05D006199 ORTHO05D006558 2.4e-94 350.1 420 50.5
Nitab4.5_0006645g0060 Nicotiana tabacum HOM05D006199 ORTHO05D006558 3.1e-94 349.7 448 48.4
Atru.chr5.3311 Acer truncatum HOM05D006199 ORTHO05D006558 4.1e-94 349.4 361 52.9
Cc02_g16220 Coffea canephora HOM05D006199 ORTHO05D006558 4.1e-94 349.4 343 54.5
FAN24G2717 Fragaria x ananassa HOM05D006199 ORTHO05D006558 2.0e-93 347.1 383 51.2
FAN27G0272 Fragaria x ananassa HOM05D006199 ORTHO05D006558 2.0e-93 347.1 406 50.2
Peaxi162Scf00362g00651 Petunia axillaris HOM05D006199 ORTHO05D006558 2.6e-93 346.7 426 48.6
MELO3C020815.2 Cucumis melo HOM05D006199 ORTHO05D006558 1.3e-92 344.4 457 46.4
Prupe.8G164900 Prunus persica HOM05D006199 ORTHO05D006558 2.9e-92 343.2 415 50.4
AUR62013038 Chenopodium quinoa HOM05D006199 ORTHO05D006558 6.5e-92 342.0 419 46.3
Ah.01g022950 Amaranthus hybridus HOM05D006199 ORTHO05D006558 3.2e-91 339.7 421 45.8
MBI08_g14630_MAGBIO Magnolia biondii HOM05D006199 ORTHO05D006558 4.2e-91 339.3 411 49.1
PSO675G4200 Papaver somniferum HOM05D006199 ORTHO05D006558 2.7e-90 336.7 370 50.3
Aqoxy6G02177 Aquilegia oxysepala HOM05D006199 ORTHO05D006558 4.0e-89 332.8 410 48.5
Ca_15302_v3 Cicer arietinum L. HOM05D006199 ORTHO05D006558 4.4e-88 329.3 369 52.3
PGSC0003DMG400006190 Solanum tuberosum HOM05D006199 ORTHO05D006558 7.5e-88 328.6 404 48.0
ECA234G0878 Erigeron canadensis HOM05D006199 ORTHO05D006558 8.3e-87 325.1 411 48.2
Actinidia00620 Actinidia chinensis HOM05D006199 ORTHO05D006558 1.1e-86 324.7 399 49.9
COL.COLO4_17328 Corchorus olitorius HOM05D006199 ORTHO05D006558 7.0e-86 322.0 377 52.8
Lsat_1_v5_gn_4_71580 Lactuca sativa HOM05D006199 ORTHO05D006558 4.5e-85 319.3 413 48.4
Sc18g0006460 Simmondsia chinensis HOM05D006199 ORTHO05D006558 4.5e-85 319.3 363 48.8
PSO541G4917 Papaver somniferum HOM05D006199 ORTHO05D006558 5.5e-83 312.4 425 44.5
DCAR_022808 Daucus carota HOM05D006199 ORTHO05D006558 2.7e-82 310.1 394 46.4
ATR0078G008 Amborella trichopoda HOM05D006199 ORTHO05D006558 1.8e-81 307.4 410 44.9
BcaB01g02961 Brassica carinata HOM05D006199 ORTHO05D006558 1.8e-81 307.4 396 51.5
arahy.Tifrunner.gnm1.ann1.WS10KT Arachis hypogaea HOM05D006199 ORTHO05D006558 4.0e-81 306.2 418 46.2
HanXRQChr10g0300911 Helianthus annuus HOM05D006199 ORTHO05D006558 5.7e-80 302.4 410 47.6
CiPaw.06G122500 Carya illinoinensis HOM05D006199 ORTHO05D006558 7.5e-80 302.0 345 49.9
Cpa.g.sc37.143 Carica papaya HOM05D006199 ORTHO05D006558 3.8e-76 289.7 245 60.4
AUR62010046 Chenopodium quinoa HOM05D006199 ORTHO05D006558 3.8e-76 289.7 420 44.3
HPP92_008341 Vanilla planifolia HOM05D006199 ORTHO05D006558 3.8e-76 289.7 401 42.9
Hund00025 Selenicereus undatus HOM05D006199 ORTHO05D006558 5.0e-76 289.3 418 43.8
Lalb_Chr23g0265011 Lupinus albus HOM05D006199 ORTHO05D006558 2.8e-74 283.5 339 48.4
Os09g0539400 Oryza sativa ssp. japonica HOM05D006199 ORTHO05D006558 4.7e-74 282.7 410 42.9
Oeu050364.1 Olea europaea HOM05D006199 ORTHO05D006558 4.1e-70 269.6 255 55.3
Zm00001eb331950 Zea mays HOM05D006199 ORTHO05D006558 1.5e-67 261.2 311 45.7
Psat5g002720 Pisum sativum HOM05D006199 ORTHO05D006558 4.1e-62 243.0 421 40.6
vmacro02274 Vaccinium macrocarpon HOM05D006199 ORTHO05D006558 8.1e-58 228.8 337 39.2
FAN11G3400 Fragaria x ananassa HOM05D006199 ORTHO05D006558 8.9e-57 225.3 201 56.7
CSS0017687 Camellia sinensis var. sinensis HOM05D006199 ORTHO05D006558 3.7e-55 219.9 192 56.2
Pp3c15_24300 Physcomitrium patens HOM05D006199 ORTHO05D006558 6.0e-53 212.6 385 36.6
unitig_37.g12834 Utricularia gibba HOM05D006199 ORTHO05D006558 2.2e-47 194.1 319 39.8
FvH4_3g06660 Fragaria vesca HOM05D006199 ORTHO05D006558 1.7e-44 184.5 168 55.4
AagrBONN_evm.TU.Sc2ySwM_362.2501 Anthoceros agrestis HOM05D006199 ORTHO05D006558 1.5e-43 181.4 390 33.1
Mapoly0068s0001 Marchantia polymorpha HOM05D006199 ORTHO05D006558 2.9e-39 167.2 372 30.9
FAN12G0591 Fragaria x ananassa HOM05D006199 ORTHO05D006558 8.1e-34 149.1 147 54.4
FAN06G5031 Fragaria x ananassa HOM05D006199 ORTHO05D006558 1.2e-29 135.2 130 54.6
FvH4_1g02330 Fragaria vesca HOM05D006199 ORTHO05D006558 2.3e-28 131.0 112 59.8
Actinidia20510 Actinidia chinensis HOM05D006199 ORTHO05D006558 3.0e-28 130.6 133 50.4
FAN14G5753 Fragaria x ananassa HOM05D006199 ORTHO05D006558 1.5e-27 128.3 112 58.9
AUR62027127 Chenopodium quinoa HOM05D006199 ORTHO05D006558 2.1e-26 124.4 199 42.2
FvH4_5g37420 Fragaria vesca HOM05D006199 ORTHO05D006558 2.1e-26 124.4 132 50.8
CSS0031508 Camellia sinensis var. sinensis HOM05D006199 ORTHO05D006558 2.8e-26 124.0 172 44.8
FvH4_4g14930 Fragaria vesca HOM05D006199 ORTHO05D006558 4.0e-25 120.2 121 52.1
MCO03G518 Micromonas commoda HOM05D006199 ORTHO05D006558 3.2e-22 110.5 180 35.6
SGA_v2.0_scaffold58G20372 Striga asiatica HOM05D006199 ORTHO05D006558 6.0e-21 106.3 152 44.1
FAN06G2201 Fragaria x ananassa HOM05D006199 ORTHO05D006558 1.2e-16 92.0 138 44.9
CBR_g870 Chara braunii HOM05D006199 ORTHO05D006558 2.9e-15 87.4 299 26.4
FvH4_7g17270 Fragaria vesca HOM05D006199 ORTHO05D006558 1.1e-14 85.5 81 50.6
FAN24G0607 Fragaria x ananassa HOM05D006199 ORTHO05D006558 7.1e-14 82.8 78 52.6
RcHm_v2.0_Chr5g0048301 Rosa chinensis HOM05D006199 ORTHO05D006558 7.1e-14 82.8 219 29.7
FvH4_2g23470 Fragaria vesca HOM05D006199 ORTHO05D006558 1.2e-13 82.0 70 57.1
FAN14G4166 Fragaria x ananassa HOM05D006199 ORTHO05D006558 8.7e-12 75.9 62 59.7
HanXRQChr15g0479941 Helianthus annuus HOM05D006199 ORTHO05D006558 1.5e-08 65.1 78 46.2
CDE02G3657 Ceratophyllum demersum HOM05D006199 ORTHO05D006558 1.9e-06 58.2 96 40.6


User provided reference genes

Program Settings