Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p32980 Brassica napus HOM05D001639 ORTHO05D008660 8.2e-51 203.4 99 100.0
BolC3t15627H Brassica oleracea HOM05D001639 ORTHO05D008660 1.2e-38 162.9 89 89.9
BolC6t39872H Brassica oleracea HOM05D001639 ORTHO05D008660 7.5e-28 127.1 134 53.7
A07p40080 Brassica napus HOM05D001639 ORTHO05D008660 3.7e-27 124.8 136 54.4
BraA07t31552Z Brassica rapa HOM05D001639 ORTHO05D008660 3.7e-27 124.8 136 54.4
C06p48430 Brassica napus HOM05D001639 ORTHO05D008660 8.3e-27 123.6 136 53.7
BcaC01g04865 Brassica carinata HOM05D001639 ORTHO05D008660 1.8e-26 122.5 81 77.8
BcaC08g46856 Brassica carinata HOM05D001639 ORTHO05D008660 3.9e-24 114.8 137 51.8
Thhalv10018752m.g Eutrema salsugineum HOM05D001639 ORTHO05D008660 2.8e-22 108.6 69 75.4
Sp5g29420 Schrenkiella parvula HOM05D001639 ORTHO05D008660 2.8e-22 108.6 69 75.4
C06p23580 Brassica napus HOM05D002744 ORTHO05D008989 6.2e-22 107.5 58 84.5
FvH4_5g13870 Fragaria vesca HOM05D001639 ORTHO05D008660 2.3e-21 105.5 54 88.9
FAN18G4546 Fragaria x ananassa HOM05D001639 ORTHO05D008660 2.3e-21 105.5 54 88.9
FAN13G0745 Fragaria x ananassa HOM05D001639 ORTHO05D008660 5.2e-21 104.4 54 87.0
Prupe.5G204700 Prunus persica HOM05D001639 ORTHO05D008660 8.9e-21 103.6 54 87.0
RcHm_v2.0_Chr7g0183061 Rosa chinensis HOM05D001639 ORTHO05D008660 8.9e-21 103.6 54 87.0
TPR.G12163 Trifolium pratense HOM05D000883 ORTHO05D008660 8.9e-21 103.6 57 80.7
Dinv17409 Davidia involucrata HOM05D001639 ORTHO05D008660 1.2e-20 103.2 54 85.2
FAN08G2252 Fragaria x ananassa HOM05D001639 ORTHO05D008660 1.2e-20 103.2 54 87.0
Gohir.A12G182400 Gossypium hirsutum HOM05D001639 ORTHO05D008660 1.2e-20 103.2 54 85.2
Gohir.D12G185500 Gossypium hirsutum HOM05D001639 ORTHO05D008660 1.2e-20 103.2 54 85.2
Gorai.008G198900 Gossypium raimondii HOM05D001639 ORTHO05D008660 1.2e-20 103.2 54 85.2
SHI27051 Sapria himalayana HOM05D000883 ORTHO05D008660 1.2e-20 103.2 54 85.2
ATR0730G033 Amborella trichopoda HOM05D001639 ORTHO05D008660 2.0e-20 102.4 56 80.4
Cc00_g01240 Coffea canephora HOM05D001639 ORTHO05D008660 2.0e-20 102.4 54 87.0
ECA247G0308 Erigeron canadensis HOM05D001639 ORTHO05D008660 2.0e-20 102.4 54 83.3
MD14G1211900 Malus domestica HOM05D001639 ORTHO05D008660 2.0e-20 102.4 54 87.0
Eucgr.B00588 Eucalyptus grandis HOM05D001639 ORTHO05D008660 2.6e-20 102.1 77 67.5
HanXRQChr16g0517681 Helianthus annuus HOM05D001639 ORTHO05D008660 2.6e-20 102.1 54 83.3
vmacro16498 Vaccinium macrocarpon HOM05D001639 ORTHO05D008660 2.6e-20 102.1 54 85.2
Actinidia35036 Actinidia chinensis HOM05D001639 ORTHO05D008660 3.4e-20 101.7 50 90.0
Hma1.2p1_0060F.1_g033130 Hydrangea macrophylla HOM05D000883 ORTHO05D008660 3.4e-20 101.7 54 83.3
Lj5A102T95 Lonicera japonica HOM05D001639 ORTHO05D008660 3.4e-20 101.7 54 87.0
Lsat_1_v5_gn_1_13480 Lactuca sativa HOM05D001639 ORTHO05D008660 4.4e-20 101.3 52 86.5
QL10p019432 Quercus lobata HOM05D001639 ORTHO05D008660 4.4e-20 101.3 54 85.2
Carub.0002s2103 Capsella rubella HOM05D001639 ORTHO05D008660 5.8e-20 100.9 69 69.6
AL2G34120 Arabidopsis lyrata HOM05D001639 ORTHO05D008660 7.5e-20 100.5 69 68.1
MELO3C017223.2 Cucumis melo HOM05D001639 ORTHO05D008660 7.5e-20 100.5 54 81.5
CsaV3_1G002900 Cucumis sativus L. HOM05D001639 ORTHO05D008660 7.5e-20 100.5 54 81.5
Medtr3g025800 Medicago truncatula HOM05D001639 ORTHO05D008660 7.5e-20 100.5 54 81.5
Sed0002915 Sechium edule HOM05D001639 ORTHO05D008660 7.5e-20 100.5 54 83.3
Ca_14339_v3 Cicer arietinum L. HOM05D000883 ORTHO05D008660 9.8e-20 100.1 54 81.5
ClCG06G015660 Citrullus lanatus HOM05D001639 ORTHO05D008660 9.8e-20 100.1 54 81.5
Ciclev10020739m.g Citrus clementina HOM05D001639 ORTHO05D008660 1.3e-19 99.8 54 81.5
AT1G74240 Arabidopsis thaliana HOM05D001639 ORTHO05D008660 1.7e-19 99.4 54 83.3
Cpa.g.sc7.193 Carica papaya HOM05D001639 ORTHO05D008660 1.7e-19 99.4 50 88.0
Atru.chr9.589 Acer truncatum HOM05D001639 ORTHO05D008660 2.2e-19 99.0 54 83.3
Nitab4.5_0003660g0030 Nicotiana tabacum HOM05D001639 ORTHO05D008660 2.2e-19 99.0 50 86.0
Peaxi162Scf00702g00419 Petunia axillaris HOM05D001639 ORTHO05D008660 2.2e-19 99.0 50 84.0
Rhsim12G0151000 Rhododendron simsii HOM05D001639 ORTHO05D008660 2.2e-19 99.0 54 83.3
Ah.02g114010 Amaranthus hybridus HOM05D001639 ORTHO05D008660 2.9e-19 98.6 56 78.6
DCAR_010158 Daucus carota HOM05D001639 ORTHO05D008660 2.9e-19 98.6 56 80.4
Duzib205G0038 Durio zibethinus HOM05D001639 ORTHO05D008660 2.9e-19 98.6 54 79.6
TAR629G2677 Trochodendron aralioides HOM05D001639 ORTHO05D008660 2.9e-19 98.6 54 79.6
CARHR067500 Cardamine hirsuta HOM05D001639 ORTHO05D008660 3.7e-19 98.2 69 66.7
Cfa019328 Carpinus fangiana HOM05D001639 ORTHO05D008660 3.7e-19 98.2 54 81.5
Haze_07720 Corylus avellana HOM05D001639 ORTHO05D008660 3.7e-19 98.2 54 81.5
Thecc.03G101300 Theobroma cacao HOM05D001639 ORTHO05D008660 3.7e-19 98.2 54 81.5
CSS0020342 Camellia sinensis var. sinensis HOM05D000883 ORTHO05D008660 4.9e-19 97.8 54 81.5
CDE07G1793 Ceratophyllum demersum HOM05D001639 ORTHO05D008660 4.9e-19 97.8 54 77.8
MD06G1202800 Malus domestica HOM05D001639 ORTHO05D008660 4.9e-19 97.8 54 83.3
Nitab4.5_0005072g0040 Nicotiana tabacum HOM05D001639 ORTHO05D008660 6.4e-19 97.4 50 84.0
arahy.Tifrunner.gnm1.ann1.8PG2RG Arachis hypogaea HOM05D001639 ORTHO05D008660 8.3e-19 97.1 55 78.2
arahy.Tifrunner.gnm1.ann1.F6S0WT Arachis hypogaea HOM05D001639 ORTHO05D008660 8.3e-19 97.1 55 78.2
EL10Ac5g11126 Beta vulgaris HOM05D001639 ORTHO05D008660 8.3e-19 97.1 54 77.8
Psat5g208120 Pisum sativum HOM05D001639 ORTHO05D008660 8.3e-19 97.1 54 79.6
Lalb_Chr23g0273971 Lupinus albus HOM05D001639 ORTHO05D008660 1.1e-18 96.7 54 77.8
Manes.14G085300 Manihot esculenta HOM05D001639 ORTHO05D008660 1.1e-18 96.7 54 79.6
Potri.012G066000 Populus trichocarpa HOM05D001639 ORTHO05D008660 1.1e-18 96.7 57 77.2
THA.LOC104813287 Tarenaya hassleriana HOM05D001639 ORTHO05D008660 1.1e-18 96.7 54 81.5
GSVIVG01007869001 Vitis vinifera HOM05D001639 ORTHO05D008660 1.1e-18 96.7 54 79.6
AUR62008523 Chenopodium quinoa HOM05D001639 ORTHO05D008660 1.4e-18 96.3 54 77.8
AUR62021566 Chenopodium quinoa HOM05D001639 ORTHO05D008660 1.4e-18 96.3 54 77.8
MBI14_g11781_MAGBIO Magnolia biondii HOM05D001639 ORTHO05D008660 1.4e-18 96.3 54 79.6
Aqoxy3G03639 Aquilegia oxysepala HOM05D001639 ORTHO05D008660 1.9e-18 95.9 54 77.8
Aa31LG4G4530 Aethionema arabicum HOM05D001639 ORTHO05D008660 2.4e-18 95.5 54 79.6
CiPaw.11G053000 Carya illinoinensis HOM05D001639 ORTHO05D008660 2.4e-18 95.5 53 79.2
COL.COLO4_02825 Corchorus olitorius HOM05D001639 ORTHO05D008660 2.4e-18 95.5 55 78.2
Glyma.04G163000 Glycine max HOM05D001639 ORTHO05D008660 4.1e-18 94.7 54 75.9
Lj1g0018856 Lotus japonicus HOM05D001639 ORTHO05D008660 4.1e-18 94.7 54 75.9
PGR083G0626 Punica granatum HOM05D001639 ORTHO05D008660 4.1e-18 94.7 54 75.9
Sc10g0009730 Simmondsia chinensis HOM05D001639 ORTHO05D008660 5.4e-18 94.4 50 80.0
SGA_v2.0_scaffold28G11758 Striga asiatica HOM05D001639 ORTHO05D008660 7.0e-18 94.0 56 71.4
HPP92_020478 Vanilla planifolia HOM05D001639 ORTHO05D008660 7.0e-18 94.0 50 86.0
HPP92_026870 Vanilla planifolia HOM05D001639 ORTHO05D008660 7.0e-18 94.0 50 86.0
Ah.11g047810 Amaranthus hybridus HOM05D001639 ORTHO05D008660 9.2e-18 93.6 54 74.1
Os03g0213800 Oryza sativa ssp. japonica HOM05D001639 ORTHO05D008660 2.0e-17 92.4 54 77.8
Sabra12G0047000 Salix brachista HOM05D000883 ORTHO05D008660 2.0e-17 92.4 57 73.7
VMungo1309G0950 Vigna mungo HOM05D001639 ORTHO05D008660 2.0e-17 92.4 54 75.9
MSTRG.22967 Avicennia marina HOM05D001639 ORTHO05D008660 2.7e-17 92.0 54 77.8
Phvul.009G191500 Phaseolus vulgaris HOM05D001639 ORTHO05D008660 2.7e-17 92.0 54 75.9
PSO017G0084 Papaver somniferum HOM05D001639 ORTHO05D008660 3.5e-17 91.7 52 76.9
PSO478G1687 Papaver somniferum HOM05D001639 ORTHO05D008660 3.5e-17 91.7 52 76.9
Zm00001eb008590 Zea mays HOM05D001639 ORTHO05D008660 4.6e-17 91.3 54 75.9
Hund02588 Selenicereus undatus HOM05D001639 ORTHO05D008660 2.3e-16 89.0 50 78.0
Hund09908 Selenicereus undatus HOM05D001639 ORTHO05D008660 3.0e-16 88.6 50 74.0
SalBow5G4026 Salvia bowleyana HOM05D001639 ORTHO05D008660 5.0e-16 87.8 65 64.6
SEGI_05413 Sequoiadendron giganteum HOM05D001639 ORTHO05D008660 1.1e-15 86.7 54 70.4
Os09g0388550 Oryza sativa ssp. japonica HOM05D001639 ORTHO05D008660 1.6e-14 82.8 51 72.5
AagrBONN_evm.TU.Sc2ySwM_117.3407 Anthoceros agrestis HOM05D001639 ORTHO05D008660 8.1e-14 80.5 56 62.5
Mapoly0001s0536 Marchantia polymorpha HOM05D000883 ORTHO05D008660 1.1e-13 80.1 54 63.0
Pp3c22_12930 Physcomitrium patens HOM05D001639 ORTHO05D008660 2.0e-12 75.9 48 64.6
Pp3c22_12945 Physcomitrium patens HOM05D001639 ORTHO05D008660 2.0e-12 75.9 48 64.6
CBR_g66807 Chara braunii HOM05D000883 ORTHO05D008660 7.5e-12 73.9 50 62.0
Mapoly0002s0071 Marchantia polymorpha HOM05D000883 ORTHO05D008660 9.9e-12 73.6 50 64.0
HanXRQChr01g0005221 Helianthus annuus HOM05D000198 ORTHO05D005702 2.2e-11 72.4 45 71.1
SMO364G0377 Selaginella moellendorffii HOM05D001639 ORTHO05D008660 1.6e-09 66.2 54 57.4
Lsat_1_v5_gn_7_83841 Lactuca sativa HOM05D000066 ORTHO05D000055 2.3e-08 62.4 38 73.7
BcaB05g24845 Brassica carinata HOM05D001639 ORTHO05D008660 5.6e-07 57.8 138 30.4
Lsat_1_v5_gn_7_83821 Lactuca sativa HOM05D000066 ORTHO05D000055 7.3e-07 57.4 32 81.2
A09p63060 Brassica napus HOM05D002805 ORTHO05D003209 1.6e-06 56.2 27 92.6
BraA09t41659Z Brassica rapa HOM05D002805 ORTHO05D003209 1.6e-06 56.2 27 92.6


User provided reference genes

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