Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p32970 Brassica napus HOM05D003348 ORTHO05D010016 4.1e-75 284.6 143 100.0
A09p62230 Brassica napus HOM05D006890 ORTHO05D000421 7.2e-72 273.9 136 100.0
BolC8t46861H Brassica oleracea HOM05D003348 ORTHO05D010016 4.2e-64 248.1 136 89.7
BolC1t02733H Brassica oleracea HOM05D003348 ORTHO05D010016 5.9e-58 227.6 144 79.9
BolC9t57897H Brassica oleracea HOM05D003348 ORTHO05D010016 8.0e-55 217.2 136 78.7
A01p32750 Brassica napus HOM05D003348 ORTHO05D010016 2.4e-35 152.5 85 92.9
BraA05t21730Z Brassica rapa HOM05D003348 ORTHO05D010016 2.4e-35 152.5 85 92.9
BraA06t26263Z Brassica rapa HOM05D003348 ORTHO05D011028 2.0e-34 149.4 87 90.8
BcaC02g11615 Brassica carinata HOM05D003348 ORTHO05D010016 1.3e-33 146.7 79 93.7
BcaC08g45319 Brassica carinata HOM05D003348 ORTHO05D010016 1.3e-33 146.7 84 90.5
C04p13150 Brassica napus HOM05D003348 ORTHO05D010016 1.3e-33 146.7 79 93.7
C06p29220 Brassica napus HOM05D003348 ORTHO05D010016 1.3e-33 146.7 84 90.5
C09p43770 Brassica napus HOM05D003348 ORTHO05D010016 1.3e-33 146.7 86 88.4
BcaC07g37267 Brassica carinata HOM05D003348 ORTHO05D010016 1.7e-33 146.4 86 87.2
BolC8t47537H Brassica oleracea HOM05D003348 ORTHO05D010016 1.7e-33 146.4 86 87.2
BraA02t07591Z Brassica rapa HOM05D003348 ORTHO05D010016 6.6e-33 144.4 86 87.2
BcaC01g00111 Brassica carinata HOM05D003348 ORTHO05D010016 1.9e-32 142.9 85 88.2
BcaC04g20417 Brassica carinata HOM05D003348 ORTHO05D010016 1.9e-32 142.9 86 86.0
BolC9t57261H Brassica oleracea HOM05D003348 ORTHO05D010016 1.9e-32 142.9 86 86.0
BcaC06g36007 Brassica carinata HOM05D003348 ORTHO05D010016 2.5e-32 142.5 86 86.0
BolC6t38448H Brassica oleracea HOM05D003348 ORTHO05D010016 2.5e-32 142.5 86 86.0
A03p65970 Brassica napus HOM05D003348 ORTHO05D010016 3.3e-32 142.1 86 86.0
BraA03t15649Z Brassica rapa HOM05D003348 ORTHO05D010016 3.3e-32 142.1 86 86.0
BcaC06g36529 Brassica carinata HOM05D003348 ORTHO05D010016 7.3e-32 141.0 86 87.2
C01p28000 Brassica napus HOM05D003348 ORTHO05D010016 9.5e-32 140.6 86 83.7
BcaC03g16878 Brassica carinata HOM05D003348 ORTHO05D010016 1.6e-31 139.8 86 84.9
C02p47780 Brassica napus HOM05D003348 ORTHO05D010016 1.6e-31 139.8 86 84.9
BcaC05g28880 Brassica carinata HOM05D003348 ORTHO05D010016 2.8e-31 139.0 86 83.7
C07p09080 Brassica napus HOM05D003348 ORTHO05D010016 2.8e-31 139.0 86 83.7
BolC2t10813H Brassica oleracea HOM05D003348 ORTHO05D010016 3.6e-31 138.7 79 89.9
BolC7t41316H Brassica oleracea HOM05D003348 ORTHO05D010016 1.0e-30 137.1 86 82.6
C09p50420 Brassica napus HOM05D003348 ORTHO05D010016 1.4e-30 136.7 86 82.6
C09p44080 Brassica napus HOM05D003348 ORTHO05D010016 3.0e-30 135.6 79 87.3
BcaC05g27372 Brassica carinata HOM05D003348 ORTHO05D010016 6.4e-28 127.9 86 81.4
BcaB07g33116 Brassica carinata HOM05D003348 ORTHO05D010016 3.2e-27 125.6 86 72.1
BcaB06g26670 Brassica carinata HOM05D003348 ORTHO05D010016 5.4e-27 124.8 86 73.3
A03p13360 Brassica napus HOM05D006890 ORTHO05D000421 7.0e-27 124.4 60 98.3
A03p49030 Brassica napus HOM05D000621 ORTHO05D000421 7.0e-27 124.4 60 98.3
A09p49030 Brassica napus HOM05D000621 ORTHO05D000421 7.0e-27 124.4 60 98.3
BraA09t39939Z Brassica rapa HOM05D003348 ORTHO05D011028 9.2e-27 124.0 60 96.7
C07p04070 Brassica napus HOM05D003348 ORTHO05D010016 4.6e-26 121.7 85 78.8
BcaB07g33152 Brassica carinata HOM05D003348 ORTHO05D010016 3.0e-25 119.0 86 68.6
BcaC02g08685 Brassica carinata HOM05D003348 ORTHO05D010016 8.6e-25 117.5 86 69.8
BcaC05g25941 Brassica carinata HOM05D003348 ORTHO05D010016 1.2e-23 113.6 64 92.2
A03p65960 Brassica napus HOM05D006890 ORTHO05D000421 1.2e-23 113.6 60 90.0
C05p18920 Brassica napus HOM05D003348 ORTHO05D010016 1.2e-23 113.6 64 92.2
BraA03t15648Z Brassica rapa HOM05D006890 ORTHO05D000421 1.2e-23 113.6 60 90.0
BolC4t24342H Brassica oleracea HOM05D003348 ORTHO05D010016 2.8e-23 112.5 70 85.7
C04p13160 Brassica napus HOM05D000621 ORTHO05D000421 3.6e-23 112.1 58 93.1
BolC6t38447H Brassica oleracea HOM05D000621 ORTHO05D000421 4.7e-23 111.7 60 85.0
BolC2t10876H Brassica oleracea HOM05D000621 ORTHO05D000421 1.1e-22 110.5 68 75.0
C05p18950 Brassica napus HOM05D006890 ORTHO05D000421 2.3e-22 109.4 68 73.5
C04p27980 Brassica napus HOM05D006890 ORTHO05D000421 3.4e-21 105.5 68 72.1
BolC4t24343H Brassica oleracea HOM05D000621 ORTHO05D000421 3.4e-21 105.5 68 72.1
BolC9t57611H Brassica oleracea HOM05D000621 ORTHO05D000421 7.5e-21 104.4 59 79.7
BcaB05g23930 Brassica carinata HOM05D003348 ORTHO05D010016 1.3e-20 103.6 69 69.6
C01p27990 Brassica napus HOM05D000621 ORTHO05D000421 1.3e-20 103.6 60 76.7
BcaC04g20095 Brassica carinata HOM05D006890 ORTHO05D000421 3.7e-20 102.1 128 46.9
BcaC06g36451 Brassica carinata HOM05D003348 ORTHO05D010016 3.7e-20 102.1 101 58.4
C09p43780 Brassica napus HOM05D006890 ORTHO05D009907 4.9e-20 101.7 59 84.7
BolC9t57629H Brassica oleracea HOM05D000621 ORTHO05D000421 3.2e-19 99.0 59 78.0
C09p53230 Brassica napus HOM05D006890 ORTHO05D000421 4.1e-19 98.6 59 76.3
BolC7t40801H Brassica oleracea HOM05D003348 ORTHO05D010016 4.1e-19 98.6 86 64.0
BolC9t58198H Brassica oleracea HOM05D006890 ORTHO05D000421 4.1e-19 98.6 59 76.3
C09p44090 Brassica napus HOM05D000621 ORTHO05D000421 7.0e-19 97.8 58 75.9
C09p53280 Brassica napus HOM05D003348 ORTHO05D011028 1.6e-18 96.7 63 73.0
BolC9t58202H Brassica oleracea HOM05D003348 ORTHO05D011028 1.6e-18 96.7 63 73.0
BraA06t26264Z Brassica rapa HOM05D006890 ORTHO05D000421 1.6e-18 96.7 49 91.8
BolC9t57262H Brassica oleracea HOM05D006890 ORTHO05D009907 2.1e-18 96.3 59 81.4
BcaB06g26696 Brassica carinata HOM05D006890 ORTHO05D000421 1.0e-17 94.0 88 55.7
A02p04450 Brassica napus HOM05D003348 ORTHO05D010016 3.9e-17 92.0 69 72.5
BcaB07g33923 Brassica carinata HOM05D003348 ORTHO05D010016 1.1e-16 90.5 65 70.8
BcaC04g20110 Brassica carinata HOM05D006890 ORTHO05D009907 1.2e-15 87.0 48 89.6
BcaB08g35588 Brassica carinata HOM05D006890 ORTHO05D000421 2.1e-15 86.3 59 66.1
C06p29210 Brassica napus HOM05D006890 ORTHO05D009907 2.8e-15 85.9 49 77.6
BcaB01g02579 Brassica carinata HOM05D006890 ORTHO05D009907 8.1e-15 84.3 59 64.4
BcaB08g34799 Brassica carinata HOM05D006890 ORTHO05D000421 8.1e-15 84.3 59 64.4
BraA01t03402Z Brassica rapa HOM05D003348 ORTHO05D010016 1.8e-14 83.2 41 97.6
BcaB06g26669 Brassica carinata HOM05D006890 ORTHO05D009907 2.3e-14 82.8 61 60.7
BcaB01g01108 Brassica carinata HOM05D000621 ORTHO05D000421 3.1e-14 82.4 60 61.7
C02p48450 Brassica napus HOM05D003348 ORTHO05D010016 6.8e-14 81.3 49 85.7
BolC2t10875H Brassica oleracea HOM05D003348 ORTHO05D010016 6.8e-14 81.3 49 85.7
BolC6t38085H Brassica oleracea HOM05D006890 ORTHO05D009907 6.8e-14 81.3 57 66.7
BcaB04g21331 Brassica carinata HOM05D000621 ORTHO05D000421 8.9e-14 80.9 59 61.0
BcaB05g22914 Brassica carinata HOM05D006890 ORTHO05D000421 1.2e-13 80.5 59 61.0
BcaC05g29812 Brassica carinata HOM05D000621 ORTHO05D000421 2.6e-13 79.3 60 56.7
BolC5t34743H Brassica oleracea HOM05D000621 ORTHO05D000421 2.6e-13 79.3 60 56.7
A05p00610 Brassica napus HOM05D000621 ORTHO05D000421 3.4e-13 79.0 60 60.0
C04p00660 Brassica napus HOM05D000621 ORTHO05D000421 3.4e-13 79.0 60 60.0
C05p60860 Brassica napus HOM05D000621 ORTHO05D000421 3.4e-13 79.0 60 55.0
Thhalv10001344m.g Eutrema salsugineum HOM05D000621 ORTHO05D000421 3.4e-13 79.0 64 51.6
A05p41650 Brassica napus HOM05D000621 ORTHO05D000421 4.4e-13 78.6 60 56.7
BraA05t19058Z Brassica rapa HOM05D000621 ORTHO05D000421 4.4e-13 78.6 60 60.0
BraA05t22885Z Brassica rapa HOM05D000621 ORTHO05D000421 4.4e-13 78.6 60 56.7
Sp3g05300 Schrenkiella parvula HOM05D000621 ORTHO05D000421 4.4e-13 78.6 60 53.3
BcaC05g30032 Brassica carinata HOM05D000621 ORTHO05D000421 5.8e-13 78.2 60 55.0
Thhalv10001340m.g Eutrema salsugineum HOM05D000621 ORTHO05D000421 9.9e-13 77.4 58 60.3
AL4G46780 Arabidopsis lyrata HOM05D000621 ORTHO05D000421 2.9e-12 75.9 62 56.5
AT1G26540 Arabidopsis thaliana HOM05D000621 ORTHO05D000421 3.7e-12 75.5 69 50.7
C09p24810 Brassica napus HOM05D003348 ORTHO05D010016 3.7e-12 75.5 42 90.5
BcaC02g12582 Brassica carinata HOM05D000621 ORTHO05D000421 4.9e-12 75.1 58 60.3
BolC4t21699H Brassica oleracea HOM05D000621 ORTHO05D000421 4.9e-12 75.1 58 60.3
CARHR142610 Cardamine hirsuta HOM05D000621 ORTHO05D000421 6.4e-12 74.7 60 58.3
Thhalv10020194m.g Eutrema salsugineum HOM05D000621 ORTHO05D000421 6.4e-12 74.7 60 51.7
BcaB05g22915 Brassica carinata HOM05D003348 ORTHO05D010016 8.3e-12 74.3 48 72.9
BcaC03g16941 Brassica carinata HOM05D003348 ORTHO05D010016 1.1e-11 73.9 37 97.3
BcaC05g28875 Brassica carinata HOM05D003348 ORTHO05D010016 1.1e-11 73.9 39 92.3
C02p48460 Brassica napus HOM05D006890 ORTHO05D000421 1.1e-11 73.9 68 57.4
AL1G39190 Arabidopsis lyrata HOM05D000621 ORTHO05D000421 1.9e-11 73.2 60 55.0
CARHR025430 Cardamine hirsuta HOM05D000621 ORTHO05D000421 1.9e-11 73.2 58 58.6
Carub.0001s2450 Capsella rubella HOM05D000621 ORTHO05D000421 3.2e-11 72.4 60 55.0
BcaC08g45318 Brassica carinata HOM05D006890 ORTHO05D009907 5.4e-11 71.6 42 76.2
Carub.0001s0241 Capsella rubella HOM05D000621 ORTHO05D000421 5.4e-11 71.6 63 55.6
AT2G47230 Arabidopsis thaliana HOM05D000621 ORTHO05D000421 7.1e-11 71.2 58 56.9
BcaB06g26643 Brassica carinata HOM05D003348 ORTHO05D010016 7.1e-11 71.2 48 68.8
BcaB06g29457 Brassica carinata HOM05D000621 ORTHO05D000421 7.1e-11 71.2 58 56.9
BcaB03g16334 Brassica carinata HOM05D003348 ORTHO05D010016 9.2e-11 70.9 48 66.7
BcaC07g42527 Brassica carinata HOM05D003348 ORTHO05D009907 9.2e-11 70.9 55 60.0
Carub.0004s2996 Capsella rubella HOM05D000621 ORTHO05D000421 9.2e-11 70.9 58 55.2
AL1G12810 Arabidopsis lyrata HOM05D000621 ORTHO05D000421 1.2e-10 70.5 62 53.2
BcaB01g01113 Brassica carinata HOM05D003348 ORTHO05D010016 2.7e-10 69.3 48 66.7
BcaC09g47891 Brassica carinata HOM05D000621 ORTHO05D000421 2.7e-10 69.3 67 49.3
BolC1t05625H Brassica oleracea HOM05D000621 ORTHO05D000421 2.7e-10 69.3 67 49.3
CARHR142620 Cardamine hirsuta HOM05D000621 ORTHO05D000421 2.7e-10 69.3 58 58.6
Thhalv10027025m.g Eutrema salsugineum HOM05D000621 ORTHO05D000421 3.5e-10 68.9 60 51.7
BcaC05g29811 Brassica carinata HOM05D000621 ORTHO05D000421 4.6e-10 68.6 62 54.8
BcaC09g47889 Brassica carinata HOM05D000621 ORTHO05D000421 4.6e-10 68.6 59 50.8
BolC1t05626H Brassica oleracea HOM05D000621 ORTHO05D000421 4.6e-10 68.6 59 50.8
THA.LOC104802141 Tarenaya hassleriana HOM05D000621 ORTHO05D000421 4.6e-10 68.6 57 50.9
BcaB01g00357 Brassica carinata HOM05D006890 ORTHO05D009907 6.0e-10 68.2 62 46.8
BraA08t33037Z Brassica rapa HOM05D000621 ORTHO05D000421 6.0e-10 68.2 58 55.2
BcaB08g34800 Brassica carinata HOM05D006890 ORTHO05D000421 7.8e-10 67.8 62 48.4
BNapus_Darmor_BZH_scaffold_118p00170 Brassica napus HOM05D000621 ORTHO05D000421 7.8e-10 67.8 67 47.8
BcaB01g01117 Brassica carinata HOM05D006890 ORTHO05D009907 1.3e-09 67.0 62 45.2
BNapus_Darmor_BZH_scaffold_118p00180 Brassica napus HOM05D000621 ORTHO05D000421 1.3e-09 67.0 59 50.8
C04p00670 Brassica napus HOM05D000621 ORTHO05D000421 1.7e-09 66.6 58 50.0
BolC4t21700H Brassica oleracea HOM05D000621 ORTHO05D000421 1.7e-09 66.6 58 50.0
C07p04060 Brassica napus HOM05D006890 ORTHO05D009907 2.3e-09 66.2 33 84.8
BraA01t04442Z Brassica rapa HOM05D000621 ORTHO05D000421 3.0e-09 65.9 67 46.3
BcaB04g21333 Brassica carinata HOM05D000621 ORTHO05D000421 3.9e-09 65.5 48 60.4
THA.LOC104817448 Tarenaya hassleriana HOM05D000621 ORTHO05D000421 5.1e-09 65.1 73 45.2
COL.COLO4_23189 Corchorus olitorius HOM05D000621 ORTHO05D000421 1.1e-08 63.9 61 49.2
C05p60060 Brassica napus HOM05D006890 ORTHO05D009907 1.5e-08 63.5 55 54.5
AT1G03300 Arabidopsis thaliana HOM05D000621 ORTHO05D000421 1.9e-08 63.2 63 54.0
A08p10370 Brassica napus HOM05D000621 ORTHO05D000421 2.5e-08 62.8 59 54.2
C08p06960 Brassica napus HOM05D003348 ORTHO05D011028 2.5e-08 62.8 39 82.1
BcaB02g08792 Brassica carinata HOM05D000621 ORTHO05D000421 3.3e-08 62.4 58 50.0
BcaB02g08793 Brassica carinata HOM05D000621 ORTHO05D000421 3.3e-08 62.4 58 46.6
FAN23G0943 Fragaria x ananassa HOM05D000621 ORTHO05D000421 4.3e-08 62.0 68 42.6
FAN26G2638 Fragaria x ananassa HOM05D000621 ORTHO05D000421 4.3e-08 62.0 68 42.6
FvH4_1g26800 Fragaria vesca HOM05D000621 ORTHO05D000421 5.6e-08 61.6 68 42.6
FAN28G1859 Fragaria x ananassa HOM05D000621 ORTHO05D000421 5.6e-08 61.6 68 42.6
FAN19G2659 Fragaria x ananassa HOM05D000621 ORTHO05D000421 7.3e-08 61.2 68 42.6
QL12p018838 Quercus lobata HOM05D000621 ORTHO05D000421 7.3e-08 61.2 64 43.8
Duzib138G1699 Durio zibethinus HOM05D000621 ORTHO05D000421 9.5e-08 60.8 60 48.3
AT1G11420 Arabidopsis thaliana HOM05D000621 ORTHO05D000421 1.2e-07 60.5 58 48.3
BcaB04g19403 Brassica carinata HOM05D003348 ORTHO05D010016 1.2e-07 60.5 39 79.5
A05p00620 Brassica napus HOM05D004146 ORTHO05D004843 1.2e-07 60.5 58 44.8
BolC8t48105H Brassica oleracea HOM05D000621 ORTHO05D000421 1.2e-07 60.5 61 49.2
Cfa005755 Carpinus fangiana HOM05D000621 ORTHO05D000421 1.2e-07 60.5 58 46.6
Haze_05080 Corylus avellana HOM05D000621 ORTHO05D000421 1.2e-07 60.5 58 48.3
Thecc.01G318600 Theobroma cacao HOM05D000621 ORTHO05D000421 1.2e-07 60.5 60 48.3
Aa31LG1G28530 Aethionema arabicum HOM05D000621 ORTHO05D000421 2.8e-07 59.3 58 46.6
BcaB01g01109 Brassica carinata HOM05D006890 ORTHO05D009907 3.6e-07 58.9 48 50.0
BcaC05g30033 Brassica carinata HOM05D000621 ORTHO05D000421 3.6e-07 58.9 59 54.2
AL1G22510 Arabidopsis lyrata HOM05D000621 ORTHO05D000421 4.7e-07 58.5 60 48.3
BcaB07g33120 Brassica carinata HOM05D006890 ORTHO05D009907 6.2e-07 58.2 43 60.5
RcHm_v2.0_Chr3g0487021 Rosa chinensis HOM05D000621 ORTHO05D000421 6.2e-07 58.2 69 42.0
Atru.chr5.946 Acer truncatum HOM05D000621 ORTHO05D000421 1.1e-06 57.4 61 42.6
Duzib211G0322 Durio zibethinus HOM05D000621 ORTHO05D000421 1.1e-06 57.4 60 43.3
TWI14G0775 Tripterygium wilfordii HOM05D000621 ORTHO05D000421 1.1e-06 57.4 61 49.2
CiPaw.07G120400 Carya illinoinensis HOM05D000621 ORTHO05D000421 1.4e-06 57.0 64 45.3
Gohir.A08G120300 Gossypium hirsutum HOM05D000621 ORTHO05D000421 1.4e-06 57.0 61 44.3
CARHR011700 Cardamine hirsuta HOM05D000621 ORTHO05D000421 1.8e-06 56.6 58 43.1
CARHR262540 Cardamine hirsuta HOM05D000621 ORTHO05D000421 1.8e-06 56.6 62 43.5
Prupe.3G007100 Prunus persica HOM05D000621 ORTHO05D000421 1.8e-06 56.6 69 36.2
AUR62000424 Chenopodium quinoa HOM05D000621 ORTHO05D000421 2.4e-06 56.2 62 43.5
Ciclev10018775m.g Citrus clementina HOM05D000621 ORTHO05D000421 2.4e-06 56.2 61 42.6
Gohir.D08G141200 Gossypium hirsutum HOM05D000621 ORTHO05D000421 2.4e-06 56.2 60 45.0
Gorai.004G145200 Gossypium raimondii HOM05D000621 ORTHO05D000421 2.4e-06 56.2 60 45.0
C03p71560 Brassica napus HOM05D003348 ORTHO05D010016 3.1e-06 55.8 33 84.8
TWI59G0701 Tripterygium wilfordii HOM05D000621 ORTHO05D000421 3.1e-06 55.8 61 49.2
AUR62006770 Chenopodium quinoa HOM05D000621 ORTHO05D000421 4.0e-06 55.5 62 41.9
Duzib133G0686 Durio zibethinus HOM05D000621 ORTHO05D000421 5.2e-06 55.1 60 43.3
MD09G1286400 Malus domestica HOM05D000621 ORTHO05D000421 5.2e-06 55.1 69 37.7
Thecc.04G160500 Theobroma cacao HOM05D000621 ORTHO05D000421 5.2e-06 55.1 58 43.1
MELO3C015906.2 Cucumis melo HOM05D000621 ORTHO05D000421 6.8e-06 54.7 61 44.3


User provided reference genes

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