Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p32850 Brassica napus HOM05D003229 ORTHO05D003835 0.0e+00 1260.0 662 100.0
BolC3t15620H Brassica oleracea HOM05D003229 ORTHO05D003835 0.0e+00 1201.4 657 96.5
BraA03t11943Z Brassica rapa HOM05D003229 ORTHO05D003835 6.5e-285 983.8 658 80.2
A03p27320 Brassica napus HOM05D003229 ORTHO05D003835 5.5e-284 980.7 658 81.2
BcaB01g02976 Brassica carinata HOM05D003229 ORTHO05D003835 1.0e-237 827.0 685 69.5
C03p68590 Brassica napus HOM05D003229 ORTHO05D003835 9.4e-58 229.2 451 41.0
BolC3t19117H Brassica oleracea HOM05D003229 ORTHO05D003835 6.1e-57 226.5 450 40.9
Sp5g17570 Schrenkiella parvula HOM05D003229 ORTHO05D003835 1.0e-56 225.7 444 39.6
AL5G21520 Arabidopsis lyrata HOM05D003229 ORTHO05D003835 3.0e-56 224.2 425 40.7
A06p22470 Brassica napus HOM05D003229 ORTHO05D003835 2.6e-55 221.1 432 41.2
A06p22530 Brassica napus HOM05D003229 ORTHO05D003835 2.6e-55 221.1 432 41.2
BraA06t25329Z Brassica rapa HOM05D003229 ORTHO05D003835 7.4e-55 219.5 448 40.6
AT3G43590 Arabidopsis thaliana HOM05D003229 ORTHO05D003835 9.7e-55 219.2 428 40.2
CARHR287360 Cardamine hirsuta HOM05D003229 ORTHO05D003835 9.7e-47 192.6 375 38.9
AL5G21420 Arabidopsis lyrata HOM05D003229 ORTHO05D003835 2.6e-44 184.5 169 55.0
Thhalv10020505m.g Eutrema salsugineum HOM05D003229 ORTHO05D003835 7.7e-44 183.0 382 40.3
C08p40280 Brassica napus HOM05D003229 ORTHO05D003835 1.1e-42 179.1 287 42.9
BolC8t51596H Brassica oleracea HOM05D003229 ORTHO05D003835 1.1e-42 179.1 287 42.9
Carub.0005s0918 Capsella rubella HOM05D003229 ORTHO05D003835 1.1e-42 179.1 230 43.9
Thhalv10019590m.g Eutrema salsugineum HOM05D003229 ORTHO05D003835 2.5e-42 177.9 172 54.7
BcaC07g41025 Brassica carinata HOM05D003229 ORTHO05D003835 4.2e-42 177.2 286 42.3
Carub.0005s0931 Capsella rubella HOM05D003229 ORTHO05D003835 7.2e-42 176.4 429 36.8
A09p57240 Brassica napus HOM05D003229 ORTHO05D003835 1.2e-41 175.6 337 42.1
CARHR267130 Cardamine hirsuta HOM05D003229 ORTHO05D003835 6.1e-41 173.3 167 51.5
Aa31LG4G13390 Aethionema arabicum HOM05D003229 ORTHO05D003835 6.8e-40 169.9 167 50.9
Thhalv10023543m.g Eutrema salsugineum HOM05D003229 ORTHO05D003835 8.8e-40 169.5 388 37.6
THA.LOC104810972 Tarenaya hassleriana HOM05D003229 ORTHO05D003835 5.7e-39 166.8 170 49.4
BraA09t41117Z Brassica rapa HOM05D003229 ORTHO05D003835 7.5e-39 166.4 333 41.4
THA.LOC104799740 Tarenaya hassleriana HOM05D003229 ORTHO05D003835 4.1e-37 160.6 394 32.5
Sp4g01780 Schrenkiella parvula HOM05D003229 ORTHO05D003835 5.4e-37 160.2 182 47.3
arahy.Tifrunner.gnm1.ann1.B3GIUW Arachis hypogaea HOM05D003229 ORTHO05D003835 1.3e-30 139.0 331 32.3
GSVIVG01037516001 Vitis vinifera HOM05D003229 ORTHO05D003835 3.1e-29 134.4 379 28.0
PSO339G4047 Papaver somniferum HOM05D003229 ORTHO05D003835 1.3e-27 129.0 162 40.7
PSO384G4356 Papaver somniferum HOM05D003229 ORTHO05D003835 1.3e-27 129.0 162 40.7
CiPaw.13G105300 Carya illinoinensis HOM05D003229 ORTHO05D003835 2.9e-27 127.9 164 39.0
Duzib177G0022 Durio zibethinus HOM05D003229 ORTHO05D003835 6.6e-27 126.7 168 42.9
Atru.chr3.3041 Acer truncatum HOM05D003229 ORTHO05D003835 1.5e-26 125.6 352 30.4
Hma1.2p1_0218F.1_g092270 Hydrangea macrophylla HOM05D003229 ORTHO05D003835 2.5e-26 124.8 174 39.1
Manes.04G063962 Manihot esculenta HOM05D003229 ORTHO05D003835 3.3e-26 124.4 160 41.9
TWI79G1121 Tripterygium wilfordii HOM05D003229 ORTHO05D003835 4.3e-26 124.0 162 40.7
DCAR_012260 Daucus carota HOM05D003229 ORTHO05D003835 7.2e-26 123.2 161 39.8
Lsat_1_v5_gn_0_39260 Lactuca sativa HOM05D003229 ORTHO05D003835 4.7e-25 120.6 268 30.2
Sed0019248 Sechium edule HOM05D003229 ORTHO05D003835 6.1e-25 120.2 161 37.3
Sc21g0006640 Simmondsia chinensis HOM05D003229 ORTHO05D003835 1.0e-24 119.4 390 28.5
TWI31G0893 Tripterygium wilfordii HOM05D003229 ORTHO05D003835 1.4e-24 119.0 277 30.7
Gohir.D13G092701 Gossypium hirsutum HOM05D003229 ORTHO05D003835 2.3e-24 118.2 164 40.9
arahy.Tifrunner.gnm1.ann1.M286MP Arachis hypogaea HOM05D003229 ORTHO05D003835 3.0e-24 117.9 331 30.8
Eucgr.J00598 Eucalyptus grandis HOM05D003229 ORTHO05D003835 4.0e-24 117.5 162 37.7
Cfa010230 Carpinus fangiana HOM05D003229 ORTHO05D003835 5.2e-24 117.1 257 31.5
Gohir.A13G086615 Gossypium hirsutum HOM05D003229 ORTHO05D003835 5.2e-24 117.1 164 40.2
Gorai.010G139700 Gossypium raimondii HOM05D003229 ORTHO05D003835 5.2e-24 117.1 164 40.2
Ciclev10028298m.g Citrus clementina HOM05D003229 ORTHO05D003835 1.5e-23 115.5 351 28.5
Sed0028007 Sechium edule HOM05D003229 ORTHO05D003835 4.4e-23 114.0 160 38.1
EL10Ac5g11782 Beta vulgaris HOM05D003229 ORTHO05D003835 7.5e-23 113.2 151 39.1
Lj6g0007817 Lotus japonicus HOM05D003229 ORTHO05D003835 9.8e-23 112.8 160 39.4
Cpa.g.sc103.35 Carica papaya HOM05D003229 ORTHO05D003835 1.7e-22 112.1 164 38.4
LjContig00564g0024504 Lotus japonicus HOM05D003229 ORTHO05D003835 2.9e-22 111.3 159 39.0
Lalb_Chr17g0347381 Lupinus albus HOM05D003229 ORTHO05D003835 2.9e-22 111.3 164 37.2
Thhalv10002168m.g Eutrema salsugineum HOM05D003229 ORTHO05D003835 3.7e-22 110.9 334 33.8
Haze_23616 Corylus avellana HOM05D003229 ORTHO05D003835 4.9e-22 110.5 256 29.7
Nn2g14458 Nelumbo nucifera HOM05D003229 ORTHO05D003835 4.9e-22 110.5 393 27.5
PGR119G2320 Punica granatum HOM05D003229 ORTHO05D003835 8.3e-22 109.8 165 34.5
Duzib128G1455 Durio zibethinus HOM05D003229 ORTHO05D003835 1.4e-21 109.0 117 41.9
Dinv32144 Davidia involucrata HOM05D003229 ORTHO05D003835 2.4e-21 108.2 162 37.7
Nitab4.5_0013078g0010 Nicotiana tabacum HOM05D003229 ORTHO05D003835 3.2e-21 107.8 100 50.0
Ca_16267_v3 Cicer arietinum L. HOM05D003229 ORTHO05D009053 4.1e-21 107.5 75 54.7
Potri.016G063800 Populus trichocarpa HOM05D003229 ORTHO05D003835 5.4e-21 107.1 177 32.8
SGA_v2.0_scaffold82G26251 Striga asiatica HOM05D003229 ORTHO05D003835 5.4e-21 107.1 139 40.3
Peaxi162Scf01091g00018 Petunia axillaris HOM05D003229 ORTHO05D003835 1.6e-20 105.5 140 39.3
ECA238G1805 Erigeron canadensis HOM05D000006 ORTHO05D000001 2.0e-20 105.1 134 40.3
Oeu048812.1 Olea europaea HOM05D003229 ORTHO05D003835 2.0e-20 105.1 157 36.3
PGSC0003DMG400002995 Solanum tuberosum HOM05D003229 ORTHO05D003835 2.0e-20 105.1 141 39.0
Oeu048813.5 Olea europaea HOM05D003229 ORTHO05D003835 2.7e-20 104.8 157 36.3
Oeu058180.2 Olea europaea HOM05D003229 ORTHO05D003835 2.7e-20 104.8 177 35.0
Ah.08g222380 Amaranthus hybridus HOM05D003229 ORTHO05D003835 3.5e-20 104.4 168 36.9
HanXRQChr05g0137001 Helianthus annuus HOM05D003229 ORTHO05D003835 4.6e-20 104.0 162 36.4
Nitab4.5_0000875g0020 Nicotiana tabacum HOM05D003229 ORTHO05D003835 4.6e-20 104.0 98 49.0
SGA_v2.0_scaffold16G07545 Striga asiatica HOM05D003229 ORTHO05D003835 5.9e-20 103.6 235 32.3
Thhalv10002930m.g Eutrema salsugineum HOM05D003229 ORTHO05D003835 1.0e-19 102.8 151 42.4
Gohir.D04G093700 Gossypium hirsutum HOM05D003229 ORTHO05D003835 1.3e-19 102.4 117 40.2
Lj2C839T18 Lonicera japonica HOM05D003229 ORTHO05D003835 1.7e-19 102.1 132 40.2
SEGI_34455 Sequoiadendron giganteum HOM05D003229 ORTHO05D003835 2.3e-19 101.7 172 30.8
Sopen11g029360 Solanum pennellii HOM05D003229 ORTHO05D003835 3.9e-19 100.9 141 38.3
TAR636G2352 Trochodendron aralioides HOM05D003229 ORTHO05D003835 5.0e-19 100.5 75 52.0
Migut.N02427 Erythranthe guttata HOM05D003229 ORTHO05D003835 6.6e-19 100.1 157 34.4
Hund20968 Selenicereus undatus HOM05D003229 ORTHO05D003835 6.6e-19 100.1 130 38.5
GSVIVG01022494001 Vitis vinifera HOM05D003229 ORTHO05D003835 6.6e-19 100.1 136 38.2
AUR62036294 Chenopodium quinoa HOM05D003229 ORTHO05D003835 8.6e-19 99.8 99 46.5
Phvul.006G006900 Phaseolus vulgaris HOM05D003229 ORTHO05D003835 1.1e-18 99.4 160 35.6
CDE05G3619 Ceratophyllum demersum HOM05D003229 ORTHO05D003835 1.5e-18 99.0 163 36.2
Solyc06g073810.4 Solanum lycopersicum HOM05D003229 ORTHO05D003835 1.5e-18 99.0 160 35.6
Solyc11g071690.3 Solanum lycopersicum HOM05D003229 ORTHO05D003835 1.5e-18 99.0 141 37.6
VMungo0540G0117 Vigna mungo HOM05D003229 ORTHO05D003835 1.5e-18 99.0 167 35.3
HanXRQChr03g0089231 Helianthus annuus HOM05D003229 ORTHO05D003835 3.3e-18 97.8 187 31.0
Psat2g023800 Pisum sativum HOM05D003229 ORTHO05D003835 3.3e-18 97.8 142 38.7
CANSAT54G2724 Cannabis sativa HOM05D003229 ORTHO05D003835 4.3e-18 97.4 203 30.0
MSTRG.26568 Avicennia marina HOM05D003229 ORTHO05D003835 7.3e-18 96.7 177 34.5
Cc01_g08150 Coffea canephora HOM05D003229 ORTHO05D003835 7.3e-18 96.7 132 38.6
MELO3C017380.2 Cucumis melo HOM05D003229 ORTHO05D003835 7.3e-18 96.7 164 33.5
Ciclev10011928m.g Citrus clementina HOM05D003229 ORTHO05D003835 9.5e-18 96.3 131 39.7
Ca_06127_v3 Cicer arietinum L. HOM05D003229 ORTHO05D003835 1.6e-17 95.5 146 37.0
Gohir.A13G089500 Gossypium hirsutum HOM05D003229 ORTHO05D003835 1.6e-17 95.5 151 32.5
Nitab4.5_0010116g0010 Nicotiana tabacum HOM05D003229 ORTHO05D003835 2.1e-17 95.1 153 34.6
AT5G36240 Arabidopsis thaliana HOM05D003229 ORTHO05D003835 3.6e-17 94.4 79 50.6
Gorai.010G139800 Gossypium raimondii HOM05D003229 ORTHO05D003835 3.6e-17 94.4 121 38.0
TPR.G13300 Trifolium pratense HOM05D003229 ORTHO05D003835 3.6e-17 94.4 146 35.6
CSS0043544 Camellia sinensis var. sinensis HOM05D003229 ORTHO05D003835 8.0e-17 93.2 133 35.3
Atru.chr8.1245 Acer truncatum HOM05D003229 ORTHO05D003835 1.4e-16 92.4 125 40.0
TWI74G0877 Tripterygium wilfordii HOM05D003229 ORTHO05D003835 1.4e-16 92.4 135 37.8
Hund15039 Selenicereus undatus HOM05D003229 ORTHO05D003835 2.3e-16 91.7 146 33.6
ClCG06G014150 Citrullus lanatus HOM05D003229 ORTHO05D003835 3.1e-16 91.3 134 38.8
Glyma.13G028000 Glycine max HOM05D003229 ORTHO05D003835 3.1e-16 91.3 136 36.0
MBI05_g37661_MAGBIO Magnolia biondii HOM05D003229 ORTHO05D003835 3.1e-16 91.3 63 58.7
Nitab4.5_0002595g0030 Nicotiana tabacum HOM05D003229 ORTHO05D003835 3.1e-16 91.3 96 40.6
EL10Ac7g16254 Beta vulgaris HOM05D003229 ORTHO05D003835 4.0e-16 90.9 130 36.9
AL7G45170 Arabidopsis lyrata HOM05D003229 ORTHO05D003835 5.2e-16 90.5 86 46.5
CBR_g8477 Chara braunii HOM05D003229 ORTHO05D000407 6.8e-16 90.1 171 30.4
Nitab4.5_0000117g0180 Nicotiana tabacum HOM05D003229 ORTHO05D003835 6.8e-16 90.1 96 40.6
COL.COLO4_29455 Corchorus olitorius HOM05D003229 ORTHO05D003835 1.5e-15 89.0 139 36.0
MBI11_g25050_MAGBIO Magnolia biondii HOM05D003229 ORTHO05D003835 3.4e-15 87.8 113 38.1
MD03G1161300 Malus domestica HOM05D003229 ORTHO05D003835 4.4e-15 87.4 160 31.2
Gohir.D13G092751 Gossypium hirsutum HOM05D003229 ORTHO05D003835 1.3e-14 85.9 336 26.5
QL01p018824 Quercus lobata HOM05D003229 ORTHO05D003835 1.3e-14 85.9 262 26.3
Thecc.05G214900 Theobroma cacao HOM05D003229 ORTHO05D003835 1.3e-14 85.9 386 26.4
Solyc01g056760.3 Solanum lycopersicum HOM05D003229 ORTHO05D003835 1.7e-14 85.5 111 37.8
CSS0045009 Camellia sinensis var. sinensis HOM05D003229 ORTHO05D003835 3.7e-14 84.3 416 24.0
AUR62020197 Chenopodium quinoa HOM05D003229 ORTHO05D003835 4.9e-14 84.0 132 36.4
Potri.009G155500 Populus trichocarpa HOM05D003229 ORTHO05D003835 8.3e-14 83.2 274 28.8
Ah.12g059520 Amaranthus hybridus HOM05D003229 ORTHO05D003835 1.1e-13 82.8 151 33.8
CDE01G0204 Ceratophyllum demersum HOM05D003229 ORTHO05D003835 1.1e-13 82.8 193 30.1
ECA240G3284 Erigeron canadensis HOM05D003229 ORTHO05D003835 1.1e-13 82.8 266 26.7
TPR.G15596 Trifolium pratense HOM05D003229 ORTHO05D003835 1.1e-13 82.8 81 45.7
vmacro04054 Vaccinium macrocarpon HOM05D003229 ORTHO05D003835 1.1e-13 82.8 94 40.4
Gorai.009G396300 Gossypium raimondii HOM05D003229 ORTHO05D003835 1.9e-13 82.0 96 38.5
Lalb_Chr13g0294131 Lupinus albus HOM05D003229 ORTHO05D003835 1.9e-13 82.0 174 29.9
Hma1.2p1_0127F.1_g059620 Hydrangea macrophylla HOM05D003229 ORTHO05D003835 4.1e-13 80.9 131 35.1
Nitab4.5_0002498g0020 Nicotiana tabacum HOM05D003229 ORTHO05D003835 5.4e-13 80.5 110 37.3
MSTRG.12405 Avicennia marina HOM05D003229 ORTHO05D003835 9.2e-13 79.7 135 33.3
CAN.G481.58 Capsicum annuum HOM05D004333 ORTHO05D005363 1.6e-12 79.0 98 41.8
Sabra09G0121900 Salix brachista HOM05D003229 ORTHO05D003835 2.0e-12 78.6 281 27.0
AUR62001585 Chenopodium quinoa HOM05D003229 ORTHO05D003835 2.7e-12 78.2 198 31.8
Glyma.20G055200 Glycine max HOM05D003229 ORTHO05D003835 3.5e-12 77.8 162 29.6
AUR62038407 Chenopodium quinoa HOM05D003229 ORTHO05D003835 6.0e-12 77.0 71 45.1
ATR0697G070 Amborella trichopoda HOM05D003229 ORTHO05D003835 1.0e-11 76.3 160 30.0
PGSC0003DMG400005910 Solanum tuberosum HOM05D003229 ORTHO05D003835 1.3e-11 75.9 134 32.1
Sabra04G0131600 Salix brachista HOM05D003229 ORTHO05D003835 1.7e-11 75.5 135 34.8
Oeu047795.1 Olea europaea HOM05D003229 ORTHO05D003835 3.9e-11 74.3 61 52.5
Sopen06g030210 Solanum pennellii HOM05D003229 ORTHO05D003835 8.6e-11 73.2 134 30.6
DCAR_022907 Daucus carota HOM05D003633 ORTHO05D004245 7.3e-10 70.1 130 33.1
SGA_v2.0_scaffold392G50668 Striga asiatica HOM05D003229 ORTHO05D003835 1.2e-09 69.3 106 35.8
Thecc.05G181700 Theobroma cacao HOM05D003229 ORTHO05D003835 1.6e-09 68.9 109 35.8
Prupe.6G179900 Prunus persica HOM05D003229 ORTHO05D003835 3.6e-09 67.8 83 38.6
CANSAT35G0213 Cannabis sativa HOM05D003229 ORTHO05D003835 6.2e-09 67.0 160 29.4
Peaxi162Scf00355g00005 Petunia axillaris HOM05D003229 ORTHO05D003835 6.2e-09 67.0 117 34.2
RcHm_v2.0_Chr6g0255381 Rosa chinensis HOM05D003229 ORTHO05D003835 8.1e-09 66.6 160 28.1
CsaV3_1G004530 Cucumis sativus L. HOM05D003229 ORTHO05D003835 1.4e-08 65.9 162 27.8
Mapoly0019s0115 Marchantia polymorpha HOM05D003229 ORTHO05D003835 1.8e-08 65.5 172 27.3
vmacro14302 Vaccinium macrocarpon HOM05D003229 ORTHO05D003835 1.2e-07 62.8 119 33.6
Actinidia12901 Actinidia chinensis HOM05D003229 ORTHO05D003835 3.4e-07 61.2 117 31.6
Duzib128G0535 Durio zibethinus HOM05D003229 ORTHO05D003835 2.9e-06 58.2 316 25.3
Psat5g107520 Pisum sativum HOM05D003229 ORTHO05D003835 2.9e-06 58.2 58 43.1
Lsat_1_v5_gn_3_111681 Lactuca sativa HOM05D003229 ORTHO05D003835 3.7e-06 57.8 160 28.1
Haze_22516 Corylus avellana HOM05D003229 ORTHO05D017800 4.9e-06 57.4 90 33.3


User provided reference genes

Program Settings