Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p31970 Brassica napus HOM05D006436 ORTHO05D008011 3.9e-99 364.8 182 100.0
BolC3t15539H Brassica oleracea HOM05D006436 ORTHO05D008011 1.1e-98 363.2 182 99.5
BraA03t11880Z Brassica rapa HOM05D006436 ORTHO05D008011 5.7e-98 360.9 182 98.9
Manes.02G134600 Manihot esculenta HOM05D006436 ORTHO05D008011 2.8e-73 278.9 176 75.6
BcaC01g04932 Brassica carinata HOM05D006436 ORTHO05D008011 7.2e-69 264.2 182 77.5
BcaB03g13643 Brassica carinata HOM05D006436 ORTHO05D008011 1.3e-65 253.4 182 74.7
AT5G37290 Arabidopsis thaliana HOM05D006436 ORTHO05D008011 6.3e-65 251.1 182 73.1
Cfa007759 Carpinus fangiana HOM05D006436 ORTHO05D008011 2.7e-63 245.7 176 70.5
Sp1g30670 Schrenkiella parvula HOM05D006436 ORTHO05D008011 1.7e-62 243.0 182 72.5
FAN18G0548 Fragaria x ananassa HOM05D006436 ORTHO05D008011 7.3e-61 237.7 199 60.3
Carub.0007s3240 Capsella rubella HOM05D006436 ORTHO05D008011 4.7e-60 235.0 179 68.7
Carub.0007s3243 Capsella rubella HOM05D006436 ORTHO05D008011 6.1e-60 234.6 178 69.7
Sc15g0000210 Simmondsia chinensis HOM05D006436 ORTHO05D008011 3.0e-59 232.3 176 64.8
FAN08G3413 Fragaria x ananassa HOM05D006436 ORTHO05D008011 1.5e-58 229.9 176 64.8
CARHR215800 Cardamine hirsuta HOM05D006436 ORTHO05D008011 4.4e-58 228.4 181 68.5
Thhalv10027956m.g Eutrema salsugineum HOM05D006436 ORTHO05D008011 5.7e-58 228.0 179 68.2
AL7G45650 Arabidopsis lyrata HOM05D006436 ORTHO05D008011 7.5e-58 227.6 182 67.6
FvH4_5g26310 Fragaria vesca HOM05D006436 ORTHO05D008011 1.6e-55 219.9 182 60.4
QL08p017466 Quercus lobata HOM05D006436 ORTHO05D008011 1.0e-54 217.2 179 62.6
Cc00_g04020 Coffea canephora HOM05D006436 ORTHO05D008011 1.7e-54 216.5 175 62.9
Hund24464 Selenicereus undatus HOM05D006436 ORTHO05D008011 4.3e-53 211.8 176 59.7
Thhalv10028339m.g Eutrema salsugineum HOM05D006436 ORTHO05D008011 7.3e-53 211.1 149 75.8
TWI77G0906 Tripterygium wilfordii HOM05D006436 ORTHO05D008011 1.2e-52 210.3 179 64.2
Ciclev10022503m.g Citrus clementina HOM05D006436 ORTHO05D008011 4.7e-52 208.4 176 63.1
PGSC0003DMG400023565 Solanum tuberosum HOM05D006436 ORTHO05D008011 8.0e-52 207.6 176 60.8
Sabra16G0133900 Salix brachista HOM05D006436 ORTHO05D008011 3.1e-51 205.7 251 49.8
THA.LOC104823829 Tarenaya hassleriana HOM05D006436 ORTHO05D008011 4.0e-51 205.3 184 62.5
arahy.Tifrunner.gnm1.ann1.RB24L7 Arachis hypogaea HOM05D006436 ORTHO05D008011 5.2e-51 204.9 176 60.2
ECA234G4304 Erigeron canadensis HOM05D006436 ORTHO05D008011 1.2e-50 203.8 176 60.8
Potri.001G225300 Populus trichocarpa HOM05D006436 ORTHO05D008011 2.6e-50 202.6 178 62.4
Thecc.09G311900 Theobroma cacao HOM05D006436 ORTHO05D008011 4.4e-50 201.8 176 61.4
Atru.chr1.2057 Acer truncatum HOM05D006436 ORTHO05D008011 7.5e-50 201.1 176 61.9
arahy.Tifrunner.gnm1.ann1.7TMM1B Arachis hypogaea HOM05D006436 ORTHO05D008011 9.8e-50 200.7 176 58.5
MBI18_g05914_MAGBIO Magnolia biondii HOM05D006436 ORTHO05D008011 1.3e-49 200.3 176 61.4
TAR365G0111 Trochodendron aralioides HOM05D006436 ORTHO05D008011 2.2e-49 199.5 176 61.9
Cpa.g.sc178.16 Carica papaya HOM05D006436 ORTHO05D008011 2.9e-49 199.1 178 60.1
SEGI_01802 Sequoiadendron giganteum HOM05D006436 ORTHO05D008011 4.9e-49 198.4 170 60.0
Ca_05765_v3 Cicer arietinum L. HOM05D006436 ORTHO05D008011 1.4e-48 196.8 176 56.8
Ca_18506_v3 Cicer arietinum L. HOM05D006436 ORTHO05D008011 1.4e-48 196.8 176 56.8
Eucgr.J01642 Eucalyptus grandis HOM05D006436 ORTHO05D008011 1.9e-48 196.4 176 58.5
LjContig00141g0009494 Lotus japonicus HOM05D006436 ORTHO05D008011 1.9e-48 196.4 176 58.0
arahy.Tifrunner.gnm1.ann1.QIUU4Q Arachis hypogaea HOM05D006436 ORTHO05D008011 3.2e-48 195.7 176 58.0
MD09G1253300 Malus domestica HOM05D006436 ORTHO05D008011 3.2e-48 195.7 179 59.2
Psat2g043120 Pisum sativum HOM05D006436 ORTHO05D008011 5.4e-48 194.9 176 58.0
Duzib168G0581 Durio zibethinus HOM05D006436 ORTHO05D008011 1.6e-47 193.4 125 74.4
HanXRQChr10g0309911 Helianthus annuus HOM05D006436 ORTHO05D008011 1.6e-47 193.4 176 58.5
Lalb_Chr16g0392121 Lupinus albus HOM05D006436 ORTHO05D008011 2.0e-47 193.0 176 58.0
Hma1.2p1_0158F.1_g069740 Hydrangea macrophylla HOM05D006436 ORTHO05D008011 2.7e-47 192.6 176 59.1
arahy.Tifrunner.gnm1.ann1.1G92VG Arachis hypogaea HOM05D006436 ORTHO05D008011 3.5e-47 192.2 176 58.5
CSS0031788 Camellia sinensis var. sinensis HOM05D006436 ORTHO05D008011 4.6e-47 191.8 176 59.1
CiPaw.03G076800 Carya illinoinensis HOM05D006436 ORTHO05D008011 4.6e-47 191.8 176 60.2
Aqoxy7G01157 Aquilegia oxysepala HOM05D006436 ORTHO05D008011 6.0e-47 191.4 176 57.4
Prupe.3G143200 Prunus persica HOM05D006436 ORTHO05D008011 6.0e-47 191.4 177 58.8
SMO347G0032 Selaginella moellendorffii HOM05D006436 ORTHO05D008011 6.0e-47 191.4 176 54.5
Mapoly0028s0068 Marchantia polymorpha HOM05D006436 ORTHO05D008011 1.7e-46 189.9 175 56.0
Gohir.D07G105500 Gossypium hirsutum HOM05D006436 ORTHO05D008011 2.3e-46 189.5 176 58.0
Gorai.001G113600 Gossypium raimondii HOM05D006436 ORTHO05D008011 2.3e-46 189.5 176 58.0
Gohir.A07G101500 Gossypium hirsutum HOM05D006436 ORTHO05D008011 5.0e-46 188.3 176 58.0
Phvul.008G233200 Phaseolus vulgaris HOM05D006436 ORTHO05D008011 1.5e-45 186.8 176 56.8
RcHm_v2.0_Chr7g0218931 Rosa chinensis HOM05D006436 ORTHO05D008011 1.5e-45 186.8 176 56.8
PGR042G2272 Punica granatum HOM05D006436 ORTHO05D008011 1.9e-45 186.4 176 58.0
Cc07_g12850 Coffea canephora HOM05D006436 ORTHO05D008011 2.5e-45 186.0 176 56.8
ATR0706G244 Amborella trichopoda HOM05D006436 ORTHO05D008011 1.6e-44 183.3 176 58.0
Glyma.14G210900 Glycine max HOM05D006436 ORTHO05D008011 3.6e-44 182.2 176 54.5
Solyc04g014610.4 Solanum lycopersicum HOM05D006436 ORTHO05D008011 3.6e-44 182.2 176 55.1
Sopen04g006750 Solanum pennellii HOM05D006436 ORTHO05D008011 3.6e-44 182.2 176 55.1
Lj4C253G7 Lonicera japonica HOM05D006436 ORTHO05D008011 4.7e-44 181.8 176 56.2
GSVIVG01035239001 Vitis vinifera HOM05D006436 ORTHO05D008011 4.7e-44 181.8 180 55.0
Medtr5g077040 Medicago truncatula HOM05D006436 ORTHO05D008011 6.2e-44 181.4 176 54.0
Rhsim11G0087100 Rhododendron simsii HOM05D006436 ORTHO05D008011 1.8e-43 179.9 176 56.2
CAN.G268.8 Capsicum annuum HOM05D006436 ORTHO05D008011 2.3e-43 179.5 176 55.1
Peaxi162Scf00442g00063 Petunia axillaris HOM05D006436 ORTHO05D008011 2.3e-43 179.5 176 54.0
FvH4_5g27560 Fragaria vesca HOM05D006436 ORTHO05D008011 3.1e-43 179.1 176 54.0
Nitab4.5_0005193g0010 Nicotiana tabacum HOM05D006436 ORTHO05D008011 3.1e-43 179.1 176 54.5
VMungo0647G0400 Vigna mungo HOM05D006436 ORTHO05D008011 6.8e-43 177.9 176 54.0
Lsat_1_v5_gn_5_79100 Lactuca sativa HOM05D006436 ORTHO05D008011 8.9e-43 177.6 176 54.5
FAN18G1736 Fragaria x ananassa HOM05D006436 ORTHO05D008011 1.2e-42 177.2 176 53.4
Sopen04g027290 Solanum pennellii HOM05D006436 ORTHO05D008011 3.4e-42 175.6 176 54.0
PGSC0003DMG400024110 Solanum tuberosum HOM05D006436 ORTHO05D008011 3.4e-42 175.6 176 54.0
Haze_14313 Corylus avellana HOM05D006436 ORTHO05D008011 5.8e-42 174.9 114 72.8
MELO3C025074.2 Cucumis melo HOM05D006436 ORTHO05D008011 5.8e-42 174.9 176 55.1
Dinv19074 Davidia involucrata HOM05D006436 ORTHO05D008011 9.8e-42 174.1 176 52.8
Os11g0546200 Oryza sativa ssp. japonica HOM05D006436 ORTHO05D008011 9.8e-42 174.1 179 52.5
Sed0003659 Sechium edule HOM05D006436 ORTHO05D008011 9.8e-42 174.1 176 54.0
Solyc04g071330.4 Solanum lycopersicum HOM05D006436 ORTHO05D008011 1.3e-41 173.7 176 53.4
Oeu012529.1 Olea europaea HOM05D006436 ORTHO05D008011 1.7e-41 173.3 176 53.4
SGA_v2.0_scaffold24G10269 Striga asiatica HOM05D006436 ORTHO05D008011 2.2e-41 172.9 207 48.8
Zm00001eb188680 Zea mays HOM05D006436 ORTHO05D008011 4.9e-41 171.8 176 52.8
CsaV3_5G020600 Cucumis sativus L. HOM05D006436 ORTHO05D008011 8.3e-41 171.0 176 53.4
vmacro01486 Vaccinium macrocarpon HOM05D006436 ORTHO05D008011 1.4e-40 170.2 176 54.0
HPP92_004857 Vanilla planifolia HOM05D006436 ORTHO05D008011 1.9e-40 169.9 176 52.8
CANSAT80G1957 Cannabis sativa HOM05D006436 ORTHO05D008011 4.1e-40 168.7 176 52.3
Nn4g25693 Nelumbo nucifera HOM05D006436 ORTHO05D008011 4.1e-40 168.7 115 71.3
Oeu039710.1 Olea europaea HOM05D006436 ORTHO05D008011 7.1e-40 167.9 182 51.1
Aa31LG5G11620 Aethionema arabicum HOM05D006436 ORTHO05D008011 9.2e-40 167.5 198 50.0
COL.COLO4_18608 Corchorus olitorius HOM05D006436 ORTHO05D008011 2.7e-39 166.0 158 57.0
PSO063G3804 Papaver somniferum HOM05D006436 ORTHO05D008011 7.8e-39 164.5 176 50.6
AagrBONN_evm.TU.Sc2ySwM_368.3316 Anthoceros agrestis HOM05D006436 ORTHO05D008011 1.3e-38 163.7 133 57.9
CDE11G1230 Ceratophyllum demersum HOM05D006436 ORTHO05D008011 1.7e-38 163.3 141 60.3
unitig_61.g26181 Utricularia gibba HOM05D006436 ORTHO05D008011 1.5e-37 160.2 196 47.4
MSTRG.12143 Avicennia marina HOM05D006436 ORTHO05D008011 6.2e-36 154.8 176 50.0
Migut.A01047 Erythranthe guttata HOM05D006436 ORTHO05D008011 6.8e-35 151.4 176 47.7
EL10Ac5g11211 Beta vulgaris HOM05D006436 ORTHO05D008011 8.9e-35 151.0 178 47.2
FAN13G2473 Fragaria x ananassa HOM05D006436 ORTHO05D008011 4.9e-33 145.2 181 47.0
Dinv28234 Davidia involucrata HOM05D006436 ORTHO05D008011 3.2e-32 142.5 86 79.1
arahy.Tifrunner.gnm1.ann1.8KE236 Arachis hypogaea HOM05D006436 ORTHO05D008011 5.4e-32 141.7 215 44.2
DCAR_006063 Daucus carota HOM05D006436 ORTHO05D008011 7.1e-32 141.4 139 54.0
Nitab4.5_0000574g0240 Nicotiana tabacum HOM05D006436 ORTHO05D008011 2.1e-31 139.8 85 77.6
CSS0025543 Camellia sinensis var. sinensis HOM05D006436 ORTHO05D008011 3.5e-31 139.0 168 49.4
CSS0035006 Camellia sinensis var. sinensis HOM05D006436 ORTHO05D008011 6.0e-31 138.3 125 56.8
AUR62026126 Chenopodium quinoa HOM05D006436 ORTHO05D008011 2.3e-30 136.3 90 73.3
SalBow6G7138 Salvia bowleyana HOM05D006436 ORTHO05D008011 3.0e-30 136.0 180 45.0
AUR62026125 Chenopodium quinoa HOM05D003339 ORTHO05D003847 8.6e-30 134.4 90 72.2
Thecc.05G304200 Theobroma cacao HOM05D006436 ORTHO05D008011 8.6e-30 134.4 99 68.7
Ah.14g085550 Amaranthus hybridus HOM05D000477 ORTHO05D000338 4.3e-29 132.1 94 70.2
CBR_g12236 Chara braunii HOM05D006436 ORTHO05D008011 4.3e-29 132.1 115 56.5
AUR62028451 Chenopodium quinoa HOM05D003339 ORTHO05D003847 4.3e-29 132.1 89 71.9
ClCG01G008580 Citrullus lanatus HOM05D006436 ORTHO05D008011 7.3e-29 131.3 139 52.5
AUR62028452 Chenopodium quinoa HOM05D006436 ORTHO05D008011 4.7e-28 128.6 90 71.1
Nitab4.5_0012165g0010 Nicotiana tabacum HOM05D006436 ORTHO05D008011 1.3e-25 120.6 142 47.9
CsaV3_1G031100 Cucumis sativus L. HOM05D006436 ORTHO05D008011 3.2e-16 89.4 89 53.9
Haze_10727 Corylus avellana HOM05D006436 ORTHO05D008011 2.6e-10 69.7 55 56.4
QL03p022571 Quercus lobata HOM05D006436 ORTHO05D008011 4.2e-08 62.4 36 80.6
Nitab4.5_0011078g0020 Nicotiana tabacum HOM05D006436 ORTHO05D008011 6.0e-07 58.5 36 75.0
CAN.G935.5 Capsicum annuum HOM05D006436 ORTHO05D008011 2.3e-06 56.6 36 75.0
Nitab4.5_0011078g0030 Nicotiana tabacum HOM05D006436 ORTHO05D008011 5.1e-06 55.5 36 69.4


User provided reference genes

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