Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p31420 Brassica napus HOM05D006319 ORTHO05D007963 6.4e-180 634.0 337 100.0
BcaC01g04984 Brassica carinata HOM05D006319 ORTHO05D007963 7.3e-99 364.8 188 99.5
A03p26290 Brassica napus HOM05D006319 ORTHO05D007963 4.4e-96 355.5 188 97.3
BcaB01g03112 Brassica carinata HOM05D006319 ORTHO05D007963 1.2e-93 347.4 190 95.8
BraA03t11843Z Brassica rapa HOM05D006319 ORTHO05D007963 2.1e-93 346.7 188 96.3
Thhalv10017176m.g Eutrema salsugineum HOM05D006319 ORTHO05D007963 2.7e-93 346.3 188 94.7
BraA04t17731Z Brassica rapa HOM05D006319 ORTHO05D007963 1.4e-89 334.0 211 83.9
A04p21670 Brassica napus HOM05D006319 ORTHO05D007963 5.2e-89 332.0 189 90.5
Sp4g11430 Schrenkiella parvula HOM05D006319 ORTHO05D007963 8.9e-89 331.3 189 89.9
BcaC02g08157 Brassica carinata HOM05D006319 ORTHO05D007963 1.2e-88 330.9 189 91.0
C04p57790 Brassica napus HOM05D006319 ORTHO05D007963 1.2e-88 330.9 189 91.0
BolC4t27297H Brassica oleracea HOM05D006319 ORTHO05D007963 1.5e-88 330.5 189 90.5
BcaB06g28232 Brassica carinata HOM05D006319 ORTHO05D007963 2.0e-88 330.1 188 89.9
BolC3t15489H Brassica oleracea HOM05D006319 ORTHO05D007963 5.1e-84 315.5 164 98.2
AL4G23100 Arabidopsis lyrata HOM05D006319 ORTHO05D007963 1.2e-80 304.3 189 85.2
Carub.0004s0957 Capsella rubella HOM05D006319 ORTHO05D007963 3.4e-80 302.8 189 85.7
Aa31LG5G7620 Aethionema arabicum HOM05D005759 ORTHO05D007172 7.1e-78 295.0 226 70.8
CARHR121630 Cardamine hirsuta HOM05D006319 ORTHO05D007963 7.1e-78 295.0 189 83.1
AT2G28605 Arabidopsis thaliana HOM05D006319 ORTHO05D007963 1.6e-77 293.9 189 83.6
Thecc.01G138200 Theobroma cacao HOM05D006319 ORTHO05D007963 2.5e-67 260.0 222 62.2
Eucgr.H05122 Eucalyptus grandis HOM05D006319 ORTHO05D007963 5.6e-67 258.8 190 68.9
Glyma.06G156100 Glycine max HOM05D006319 ORTHO05D007963 1.4e-65 254.2 190 67.4
THA.LOC104826346 Tarenaya hassleriana HOM05D006319 ORTHO05D007963 1.4e-65 254.2 194 67.5
Potri.007G100800 Populus trichocarpa HOM05D006319 ORTHO05D007963 9.0e-65 251.5 222 61.3
Atru.chr4.1000 Acer truncatum HOM05D006319 ORTHO05D007963 2.0e-64 250.4 191 67.5
CSS0021790 Camellia sinensis var. sinensis HOM05D006319 ORTHO05D007963 4.5e-64 249.2 219 60.3
Prupe.4G276300 Prunus persica HOM05D006319 ORTHO05D007963 5.8e-64 248.8 191 67.5
CsaV3_2G019570 Cucumis sativus L. HOM05D006319 ORTHO05D007963 1.7e-63 247.3 187 67.4
Duzib187G0662 Durio zibethinus HOM05D006319 ORTHO05D007963 1.7e-63 247.3 191 66.5
Gorai.011G118400 Gossypium raimondii HOM05D006319 ORTHO05D007963 1.7e-63 247.3 191 67.5
Actinidia16521 Actinidia chinensis HOM05D006319 ORTHO05D007963 6.4e-63 245.4 190 66.3
Aqoxy6G00315 Aquilegia oxysepala HOM05D006319 ORTHO05D007963 6.4e-63 245.4 211 61.6
Phvul.009G154200 Phaseolus vulgaris HOM05D006319 ORTHO05D007963 1.1e-62 244.6 186 66.1
GSVIVG01022331001 Vitis vinifera HOM05D006319 ORTHO05D007963 1.4e-62 244.2 191 66.5
ClCG02G000280 Citrullus lanatus HOM05D005757 ORTHO05D007090 1.9e-62 243.8 212 61.8
MELO3C023216.2 Cucumis melo HOM05D006319 ORTHO05D007963 1.9e-62 243.8 187 66.3
Manes.12G159300 Manihot esculenta HOM05D006319 ORTHO05D007963 1.9e-62 243.8 186 68.3
QL10p041175 Quercus lobata HOM05D006319 ORTHO05D007963 1.9e-62 243.8 223 58.3
VMungo0464G0362 Vigna mungo HOM05D006319 ORTHO05D007963 1.9e-62 243.8 190 64.7
CiPaw.04G079200 Carya illinoinensis HOM05D006319 ORTHO05D007963 3.2e-62 243.0 191 67.5
Dinv05221 Davidia involucrata HOM05D006319 ORTHO05D007963 3.2e-62 243.0 218 59.2
Nn1g08971 Nelumbo nucifera HOM05D006319 ORTHO05D007963 7.1e-62 241.9 164 70.1
Ciclev10002322m.g Citrus clementina HOM05D006319 ORTHO05D007963 9.3e-62 241.5 231 57.1
Hma1.2p1_0236F.1_g099250 Hydrangea macrophylla HOM05D006319 ORTHO05D007963 9.3e-62 241.5 190 65.3
COL.COLO4_35821 Corchorus olitorius HOM05D006319 ORTHO05D007963 1.6e-61 240.7 183 67.2
CANSAT01G1475 Cannabis sativa HOM05D006319 ORTHO05D007963 2.1e-61 240.4 192 65.6
Psat5g060360 Pisum sativum HOM05D006319 ORTHO05D007963 2.1e-61 240.4 187 65.8
Glyma.04G209900 Glycine max HOM05D006319 ORTHO05D007963 2.7e-61 240.0 184 64.7
Medtr3g096750 Medicago truncatula HOM05D006319 ORTHO05D007963 3.5e-61 239.6 206 62.6
PGR102G0633 Punica granatum HOM05D006319 ORTHO05D007963 4.6e-61 239.2 190 64.2
FvH4_1g24980 Fragaria vesca HOM05D006319 ORTHO05D007963 6.0e-61 238.8 221 58.8
vmacro18688 Vaccinium macrocarpon HOM05D006319 ORTHO05D007963 1.0e-60 238.0 226 57.1
Migut.H00824 Erythranthe guttata HOM05D006319 ORTHO05D007963 1.3e-60 237.7 205 62.0
RcHm_v2.0_Chr2g0122611 Rosa chinensis HOM05D006319 ORTHO05D007963 1.3e-60 237.7 221 58.8
QL10p041464 Quercus lobata HOM05D006319 ORTHO05D007963 3.0e-60 236.5 165 70.9
SGA_v2.0_scaffold273G46467 Striga asiatica HOM05D006319 ORTHO05D007963 3.0e-60 236.5 217 57.6
FAN23G2801 Fragaria x ananassa HOM05D006319 ORTHO05D007963 5.1e-60 235.7 220 58.2
Lj1g0009956 Lotus japonicus HOM05D006319 ORTHO05D007963 5.1e-60 235.7 207 61.8
MD01G1000300 Malus domestica HOM05D006319 ORTHO05D007963 5.1e-60 235.7 190 62.6
TWI31G0926 Tripterygium wilfordii HOM05D006319 ORTHO05D007963 6.7e-60 235.3 190 65.3
MSTRG.23490 Avicennia marina HOM05D006319 ORTHO05D007963 1.1e-59 234.6 196 64.3
Cpa.g.sc37.12 Carica papaya HOM05D006319 ORTHO05D007963 1.5e-59 234.2 202 59.9
Oeu011026.1 Olea europaea HOM05D006319 ORTHO05D007963 1.5e-59 234.2 214 59.8
Hund07232 Selenicereus undatus HOM05D006319 ORTHO05D007963 9.6e-59 231.5 197 61.9
arahy.Tifrunner.gnm1.ann1.7TU5G5 Arachis hypogaea HOM05D006319 ORTHO05D007963 1.3e-58 231.1 189 63.5
AUR62000524 Chenopodium quinoa HOM05D006319 ORTHO05D007963 1.3e-58 231.1 197 61.9
Lj7A582T32 Lonicera japonica HOM05D006319 ORTHO05D007963 1.3e-58 231.1 158 70.3
Sc02g0003550 Simmondsia chinensis HOM05D006319 ORTHO05D007963 1.6e-58 230.7 190 62.6
arahy.Tifrunner.gnm1.ann1.4SM61H Arachis hypogaea HOM05D006319 ORTHO05D007963 2.8e-58 229.9 189 60.8
SalBow1G4836 Salvia bowleyana HOM05D006319 ORTHO05D007963 4.8e-58 229.2 167 70.1
Sopen04g004550 Solanum pennellii HOM05D006319 ORTHO05D007963 4.8e-58 229.2 195 62.6
PGSC0003DMG400032538 Solanum tuberosum HOM05D006319 ORTHO05D007963 4.8e-58 229.2 243 55.1
Lalb_Chr08g0238171 Lupinus albus HOM05D006319 ORTHO05D007963 6.2e-58 228.8 185 60.5
EL10Ac4g09632 Beta vulgaris HOM05D006319 ORTHO05D007963 1.1e-57 228.0 269 52.8
Nitab4.5_0004105g0090 Nicotiana tabacum HOM05D006319 ORTHO05D007963 1.1e-57 228.0 229 55.9
Solyc04g009420.3 Solanum lycopersicum HOM05D006319 ORTHO05D007963 1.8e-57 227.3 239 56.1
Nitab4.5_0013462g0010 Nicotiana tabacum HOM05D006319 ORTHO05D007963 2.4e-57 226.9 190 64.2
arahy.Tifrunner.gnm1.ann1.B4AV5R Arachis hypogaea HOM05D006319 ORTHO05D007963 3.1e-57 226.5 189 61.4
arahy.Tifrunner.gnm1.ann1.P5PFFU Arachis hypogaea HOM05D006319 ORTHO05D007963 3.1e-57 226.5 189 63.0
AUR62006869 Chenopodium quinoa HOM05D006319 ORTHO05D007963 3.1e-57 226.5 246 54.9
DCAR_009594 Daucus carota HOM05D006319 ORTHO05D007963 3.1e-57 226.5 162 68.5
FAN19G2853 Fragaria x ananassa HOM05D006319 ORTHO05D007963 3.1e-57 226.5 238 55.0
MBI06_g35206_MAGBIO Magnolia biondii HOM05D006319 ORTHO05D007963 5.3e-57 225.7 186 64.5
Cc02_g33910 Coffea canephora HOM05D006319 ORTHO05D007963 6.9e-57 225.3 226 58.4
TAR628G0979 Trochodendron aralioides HOM05D006319 ORTHO05D007963 1.2e-56 224.6 223 53.8
FAN28G2219 Fragaria x ananassa HOM05D006319 ORTHO05D007963 2.6e-56 223.4 237 54.4
unitig_899.g15151 Utricularia gibba HOM05D006319 ORTHO05D007963 7.6e-56 221.9 186 61.3
Ah.06g191080 Amaranthus hybridus HOM05D006319 ORTHO05D007963 1.7e-55 220.7 203 56.7
ECA246G1987 Erigeron canadensis HOM05D000001 ORTHO05D000003 1.7e-55 220.7 158 67.1
PSO782G1065 Papaver somniferum HOM05D006319 ORTHO05D007963 1.1e-54 218.0 160 65.6
CAN.G186.2 Capsicum annuum HOM05D006319 ORTHO05D007963 5.5e-54 215.7 238 51.3
CDE08G0565 Ceratophyllum demersum HOM05D006319 ORTHO05D007963 3.5e-53 213.0 165 66.7
HanXRQChr12g0378071 Helianthus annuus HOM05D006319 ORTHO05D007963 7.9e-53 211.8 225 52.4
Zm00001eb422700 Zea mays HOM05D006319 ORTHO05D007963 7.9e-53 211.8 161 64.6
ATR0584G200 Amborella trichopoda HOM05D006319 ORTHO05D007963 1.0e-52 211.5 166 65.7
Eucgr.H02106 Eucalyptus grandis HOM05D006319 ORTHO05D007963 1.8e-52 210.7 190 61.6
HPP92_009279 Vanilla planifolia HOM05D006319 ORTHO05D007963 9.6e-51 204.9 189 57.7
Peaxi162Scf00842g00214 Petunia axillaris HOM05D006319 ORTHO05D007963 2.0e-48 197.2 141 70.9
SEGI_06099 Sequoiadendron giganteum HOM05D006319 ORTHO05D007963 1.4e-46 191.0 157 59.9
SEGI_37383 Sequoiadendron giganteum HOM05D006319 ORTHO05D007963 3.2e-46 189.9 155 60.0
arahy.Tifrunner.gnm1.ann1.E0QW5U Arachis hypogaea HOM05D006319 ORTHO05D007963 3.0e-44 183.3 189 54.0
arahy.Tifrunner.gnm1.ann1.GQG991 Arachis hypogaea HOM05D006319 ORTHO05D007963 3.9e-44 183.0 156 59.6
AagrBONN_evm.TU.Sc2ySwM_228.2950 Anthoceros agrestis HOM05D006319 ORTHO05D007963 1.8e-41 174.1 170 53.5
Potri.005G068500 Populus trichocarpa HOM05D006319 ORTHO05D007963 5.9e-40 169.1 189 51.3
Rhsim01G0141500 Rhododendron simsii HOM05D006319 ORTHO05D007963 5.9e-40 169.1 184 50.0
Pp3c8_18060 Physcomitrium patens HOM05D006319 ORTHO05D007963 1.0e-39 168.3 160 56.2
Lsat_1_v5_gn_5_34560 Lactuca sativa HOM05D006319 ORTHO05D007963 6.5e-39 165.6 156 57.1
Gohir.D10G108000 Gossypium hirsutum HOM05D006319 ORTHO05D007963 9.1e-33 145.2 191 46.1
Gohir.A10G068160 Gossypium hirsutum HOM05D006319 ORTHO05D007963 3.8e-31 139.8 191 44.5
Mapoly0092s0018 Marchantia polymorpha HOM05D006319 ORTHO05D007963 5.0e-31 139.4 174 45.4
SMO117G0258 Selaginella moellendorffii HOM05D006319 ORTHO05D007963 1.1e-30 138.3 153 47.1
Ca_16986_v3 Cicer arietinum L. HOM05D001650 ORTHO05D001592 2.5e-30 137.1 92 71.7
CBR_g49982 Chara braunii HOM05D006319 ORTHO05D007963 7.9e-29 132.1 169 43.2
TPR.G10777 Trifolium pratense HOM05D006319 ORTHO05D007963 1.3e-26 124.8 82 72.0
Cre16.g678851 Chlamydomonas reinhardtii HOM05D006319 ORTHO05D007963 1.2e-24 118.2 168 39.9
FAN23G0464 Fragaria x ananassa HOM05D006319 ORTHO05D007963 2.6e-24 117.1 82 68.3
AagrBONN_evm.TU.Sc2ySwM_362.516 Anthoceros agrestis HOM05D005157 ORTHO05D006652 4.5e-24 116.3 134 51.5
FAN26G1803 Fragaria x ananassa HOM05D001650 ORTHO05D001592 7.7e-24 115.5 90 62.2
TPR.G33590 Trifolium pratense HOM05D001650 ORTHO05D001592 3.8e-23 113.2 105 57.1
Manes.12G147800 Manihot esculenta HOM05D006319 ORTHO05D007963 6.5e-23 112.5 105 61.9
arahy.Tifrunner.gnm1.ann1.PNID9I Arachis hypogaea HOM05D006319 ORTHO05D007963 7.2e-22 109.0 111 51.4
arahy.Tifrunner.gnm1.ann1.Q7YENP Arachis hypogaea HOM05D006319 ORTHO05D007963 9.4e-22 108.6 107 54.2
arahy.Tifrunner.gnm1.ann1.949H7S Arachis hypogaea HOM05D006319 ORTHO05D007963 8.0e-21 105.5 119 51.3
Os04g0434900 Oryza sativa ssp. japonica HOM05D006319 ORTHO05D007963 5.7e-19 99.4 69 66.7
arahy.Tifrunner.gnm1.ann1.RE08FE Arachis hypogaea HOM05D006319 ORTHO05D007963 1.9e-14 84.3 122 41.8
MCO01G211 Micromonas commoda HOM05D006319 ORTHO05D007963 1.9e-14 84.3 163 35.6
arahy.Tifrunner.gnm1.ann1.I50TU7 Arachis hypogaea HOM05D006319 ORTHO05D007963 3.4e-11 73.6 107 41.1
CDE08G0611 Ceratophyllum demersum HOM05D006319 ORTHO05D007963 3.4e-11 73.6 66 63.6
PRCOL_00004434 Prasinoderma coloniale HOM05D006319 ORTHO05D007963 6.3e-10 69.3 97 42.3
Nn4g25453 Nelumbo nucifera HOM05D006608 ORTHO05D008316 1.7e-07 61.2 161 29.8
QL03p016892 Quercus lobata HOM05D006608 ORTHO05D008316 1.7e-07 61.2 222 26.6
MBI17_g01556_MAGBIO Magnolia biondii HOM05D006319 ORTHO05D007963 3.8e-07 60.1 52 53.8
Mapoly0002s0119 Marchantia polymorpha HOM05D006608 ORTHO05D008316 3.8e-07 60.1 109 33.0
CiPaw.08G154200 Carya illinoinensis HOM05D006608 ORTHO05D008316 5.0e-07 59.7 208 26.4
Ca_09291_v3 Cicer arietinum L. HOM05D006608 ORTHO05D008316 6.5e-07 59.3 127 30.7
ATR0706G264 Amborella trichopoda HOM05D006608 ORTHO05D008316 1.1e-06 58.5 177 27.1
Gorai.009G317700 Gossypium raimondii HOM05D002933 ORTHO05D007742 1.5e-06 58.2 176 24.4
SGA_v2.0_scaffold4G01979 Striga asiatica HOM05D006608 ORTHO05D008316 1.5e-06 58.2 203 26.1
arahy.Tifrunner.gnm1.ann1.7ZK9KC Arachis hypogaea HOM05D006608 ORTHO05D008316 1.9e-06 57.8 208 27.4
arahy.Tifrunner.gnm1.ann1.V41D0B Arachis hypogaea HOM05D006608 ORTHO05D008316 1.9e-06 57.8 209 26.8
Gohir.D05G300200 Gossypium hirsutum HOM05D002933 ORTHO05D007742 2.5e-06 57.4 121 28.1
arahy.Tifrunner.gnm1.ann1.FYW6BY Arachis hypogaea HOM05D006608 ORTHO05D008316 3.2e-06 57.0 182 27.5
MBI11_g02539_MAGBIO Magnolia biondii HOM05D006319 ORTHO05D007963 3.2e-06 57.0 79 48.1
Actinidia35508 Actinidia chinensis HOM05D006608 ORTHO05D008316 4.2e-06 56.6 177 26.6
arahy.Tifrunner.gnm1.ann1.0RV1NN Arachis hypogaea HOM05D006608 ORTHO05D008316 4.2e-06 56.6 182 27.5
PSO210G3601 Papaver somniferum HOM05D006608 ORTHO05D008316 4.2e-06 56.6 114 30.7
PSO761G0023 Papaver somniferum HOM05D006608 ORTHO05D008316 4.2e-06 56.6 114 30.7
Pp3c25_7030 Physcomitrium patens HOM05D006608 ORTHO05D008316 4.2e-06 56.6 188 27.1
Potri.005G010700 Populus trichocarpa HOM05D006608 ORTHO05D008316 4.2e-06 56.6 158 26.6
vmacro01585 Vaccinium macrocarpon HOM05D006608 ORTHO05D008316 4.2e-06 56.6 179 27.4
Peaxi162Scf01223g00010 Petunia axillaris HOM05D002933 ORTHO05D007742 5.5e-06 56.2 121 28.1
unitig_0.g2226 Utricularia gibba HOM05D006608 ORTHO05D008316 5.5e-06 56.2 200 26.0
TWI12G0784 Tripterygium wilfordii HOM05D006608 ORTHO05D008316 7.2e-06 55.8 252 24.6
Atru.chr12.543 Acer truncatum HOM05D002933 ORTHO05D007742 9.5e-06 55.5 135 27.4
Dinv30914 Davidia involucrata HOM05D006608 ORTHO05D008316 9.5e-06 55.5 182 26.4
FvH4_7g21370 Fragaria vesca HOM05D002933 ORTHO05D007742 9.5e-06 55.5 150 24.7
FAN01G1038 Fragaria x ananassa HOM05D002933 ORTHO05D007742 9.5e-06 55.5 150 24.7
FAN06G1816 Fragaria x ananassa HOM05D002933 ORTHO05D007742 9.5e-06 55.5 150 24.7
FAN06G3199 Fragaria x ananassa HOM05D002933 ORTHO05D007742 9.5e-06 55.5 150 24.7
FAN10G2797 Fragaria x ananassa HOM05D002933 ORTHO05D007742 9.5e-06 55.5 150 24.7
Lj9A439T48 Lonicera japonica HOM05D002933 ORTHO05D007742 9.5e-06 55.5 118 26.3
SalBow5G2350 Salvia bowleyana HOM05D006608 ORTHO05D008316 9.5e-06 55.5 136 29.4
THA.LOC104824268 Tarenaya hassleriana HOM05D002933 ORTHO05D007742 9.5e-06 55.5 120 28.3


User provided reference genes

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