Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g05038 Brassica carinata HOM05D006547 ORTHO05D008112 2.2e-64 248.8 130 100.0
C03p30880 Brassica napus HOM05D006547 ORTHO05D008112 2.2e-64 248.8 130 100.0
BolC3t15440H Brassica oleracea HOM05D006547 ORTHO05D008112 2.2e-64 248.8 130 100.0
BraA05t19055Z Brassica rapa HOM05D006547 ORTHO05D008112 4.7e-46 188.0 117 84.6
A05p00570 Brassica napus HOM05D006547 ORTHO05D008112 1.5e-44 183.0 103 91.3
AT2G47270 Arabidopsis thaliana HOM05D006547 ORTHO05D008112 2.0e-44 182.6 103 91.3
CARHR142670 Cardamine hirsuta HOM05D006547 ORTHO05D008112 2.0e-44 182.6 103 92.2
BcaB01g03174 Brassica carinata HOM05D006547 ORTHO05D008112 4.4e-44 181.4 103 92.2
Carub.0004s3001 Capsella rubella HOM05D006547 ORTHO05D008112 4.4e-44 181.4 103 90.3
AL302U10010 Arabidopsis lyrata HOM05D006547 ORTHO05D008112 9.8e-44 180.3 104 92.3
AL4G46840 Arabidopsis lyrata HOM05D006547 ORTHO05D008112 9.8e-44 180.3 104 92.3
Sp4g29240 Schrenkiella parvula HOM05D006547 ORTHO05D008112 9.8e-44 180.3 103 93.2
BcaB02g08786 Brassica carinata HOM05D006547 ORTHO05D008112 2.9e-43 178.7 103 89.3
C04p00620 Brassica napus HOM05D006547 ORTHO05D008112 3.7e-43 178.3 103 88.3
BolC4t21695H Brassica oleracea HOM05D006547 ORTHO05D008112 4.9e-43 177.9 103 88.3
Thhalv10001736m.g Eutrema salsugineum HOM05D006547 ORTHO05D008112 6.4e-43 177.6 103 89.3
A04p34890 Brassica napus HOM05D006547 ORTHO05D008112 1.1e-39 166.8 103 88.3
BraSC79t46680Z Brassica rapa HOM05D006547 ORTHO05D008112 1.1e-39 166.8 103 88.3
BcaB06g29454 Brassica carinata HOM05D006547 ORTHO05D008112 2.5e-39 165.6 103 88.3
Aa31LG1G28590 Aethionema arabicum HOM05D006547 ORTHO05D008112 9.8e-36 153.7 106 80.2
C04p72660 Brassica napus HOM05D006547 ORTHO05D008112 3.2e-34 148.7 105 81.0
Atru.chr5.966 Acer truncatum HOM05D006547 ORTHO05D008112 2.1e-14 82.8 90 53.3
THA.LOC104817451 Tarenaya hassleriana HOM05D006547 ORTHO05D008112 2.8e-14 82.4 113 50.4
TAR362G1145 Trochodendron aralioides HOM05D006547 ORTHO05D008112 4.0e-13 78.6 72 56.9
TAR365G0268 Trochodendron aralioides HOM05D006547 ORTHO05D008112 6.9e-13 77.8 105 45.7
DCAR_005744 Daucus carota HOM05D006547 ORTHO05D008112 9.0e-13 77.4 88 51.1
TAR633G2779 Trochodendron aralioides HOM05D006547 ORTHO05D008112 1.5e-12 76.6 73 57.5
Duzib251G0664 Durio zibethinus HOM05D006547 ORTHO05D008112 2.0e-12 76.3 71 54.9
Manes.05G013600 Manihot esculenta HOM05D006547 ORTHO05D008112 2.0e-12 76.3 98 49.0
Thecc.02G266700 Theobroma cacao HOM05D006547 ORTHO05D008112 3.4e-12 75.5 81 51.9
DCAR_002885 Daucus carota HOM05D006547 ORTHO05D008112 4.4e-12 75.1 100 45.0
Cpa.g.sc18.81 Carica papaya HOM05D006547 ORTHO05D008112 5.8e-12 74.7 78 51.3
Ciclev10022819m.g Citrus clementina HOM05D006547 ORTHO05D008112 7.6e-12 74.3 98 42.9
TWI36G0249 Tripterygium wilfordii HOM05D006547 ORTHO05D008112 7.6e-12 74.3 117 37.6
Hma1.2p1_0486F.1_g163490 Hydrangea macrophylla HOM05D006547 ORTHO05D008112 9.9e-12 73.9 102 46.1
CSS0011798 Camellia sinensis var. sinensis HOM05D006547 ORTHO05D008112 1.3e-11 73.6 91 42.9
Ca_10619_v3 Cicer arietinum L. HOM05D006547 ORTHO05D008112 1.7e-11 73.2 115 40.0
CANSAT25G1528 Cannabis sativa HOM05D006547 ORTHO05D008112 4.9e-11 71.6 50 70.0
COL.COLO4_23526 Corchorus olitorius HOM05D006547 ORTHO05D008112 4.9e-11 71.6 84 48.8
HanXRQChr15g0465071 Helianthus annuus HOM05D006547 ORTHO05D008112 4.9e-11 71.6 96 42.7
Haze_05072 Corylus avellana HOM05D006547 ORTHO05D008112 6.4e-11 71.2 86 46.5
Dinv15146 Davidia involucrata HOM05D004325 ORTHO05D005470 6.4e-11 71.2 73 47.9
Cfa005764 Carpinus fangiana HOM05D006547 ORTHO05D008112 8.4e-11 70.9 72 48.6
Duzib268G0572 Durio zibethinus HOM05D006547 ORTHO05D008112 8.4e-11 70.9 100 42.0
Glyma.20G175000 Glycine max HOM05D006547 ORTHO05D008112 8.4e-11 70.9 95 47.4
Lj5g0010023 Lotus japonicus HOM05D006547 ORTHO05D008112 1.1e-10 70.5 86 50.0
TPR.G8830 Trifolium pratense HOM05D006547 ORTHO05D008112 1.4e-10 70.1 96 40.6
FAN26G3307 Fragaria x ananassa HOM05D006547 ORTHO05D008112 1.9e-10 69.7 97 48.5
Medtr1g096530 Medicago truncatula HOM05D006547 ORTHO05D008112 1.9e-10 69.7 88 43.2
FAN19G2346 Fragaria x ananassa HOM05D006547 ORTHO05D008112 3.2e-10 68.9 97 48.5
Lalb_Chr02g0141791 Lupinus albus HOM05D006547 ORTHO05D008112 3.2e-10 68.9 99 46.5
Potri.002G193300 Populus trichocarpa HOM05D006547 ORTHO05D008112 3.2e-10 68.9 89 48.3
EL10As5g23562 Beta vulgaris HOM05D006547 ORTHO05D008112 4.2e-10 68.6 72 47.2
CAN.G1280.37 Capsicum annuum HOM05D006547 ORTHO05D008112 4.2e-10 68.6 91 42.9
FvH4_1g26990 Fragaria vesca HOM05D006547 ORTHO05D008112 4.2e-10 68.6 96 47.9
MD17G1278000 Malus domestica HOM05D006547 ORTHO05D008112 5.4e-10 68.2 109 40.4
Prupe.3G008700 Prunus persica HOM05D006547 ORTHO05D008112 5.4e-10 68.2 87 44.8
VMungo0720G0102 Vigna mungo HOM05D006547 ORTHO05D008112 5.4e-10 68.2 92 48.9
arahy.Tifrunner.gnm1.ann1.BQK7VT Arachis hypogaea HOM05D006547 ORTHO05D008112 7.1e-10 67.8 79 48.1
Gohir.A12G145800 Gossypium hirsutum HOM05D006547 ORTHO05D008112 7.1e-10 67.8 100 43.0
Gohir.D12G150400 Gossypium hirsutum HOM05D006547 ORTHO05D008112 7.1e-10 67.8 100 43.0
Gorai.008G161900 Gossypium raimondii HOM05D006547 ORTHO05D008112 7.1e-10 67.8 100 43.0
MD09G1285300 Malus domestica HOM05D006547 ORTHO05D008112 7.1e-10 67.8 47 68.1
FAN28G2331 Fragaria x ananassa HOM05D006547 ORTHO05D008112 1.2e-09 67.0 96 46.9
QL12p019056 Quercus lobata HOM05D006547 ORTHO05D008112 1.2e-09 67.0 84 45.2
RcHm_v2.0_Chr3g0487231 Rosa chinensis HOM05D006547 ORTHO05D008112 1.2e-09 67.0 76 48.7
TWI18G0834 Tripterygium wilfordii HOM05D006547 ORTHO05D008112 1.2e-09 67.0 116 38.8
CAN.G293.16 Capsicum annuum HOM05D006547 ORTHO05D008112 1.6e-09 66.6 101 41.6
FAN23G3047 Fragaria x ananassa HOM05D006547 ORTHO05D008112 2.1e-09 66.2 97 47.4
Manes.01G229900 Manihot esculenta HOM05D006547 ORTHO05D008112 2.1e-09 66.2 98 42.9
Oeu008480.1 Olea europaea HOM05D006547 ORTHO05D008112 2.1e-09 66.2 118 37.3
DCAR_012331 Daucus carota HOM05D006547 ORTHO05D008112 2.7e-09 65.9 78 47.4
Oeu038038.1 Olea europaea HOM05D006547 ORTHO05D008112 2.7e-09 65.9 77 48.1
vmacro02389 Vaccinium macrocarpon HOM05D006547 ORTHO05D008112 2.7e-09 65.9 68 50.0
CiPaw.07G119400 Carya illinoinensis HOM05D006547 ORTHO05D008112 3.5e-09 65.5 114 39.5
DCAR_018278 Daucus carota HOM05D006547 ORTHO05D008112 3.5e-09 65.5 77 45.5
Duzib248G0337 Durio zibethinus HOM05D006547 ORTHO05D008112 3.5e-09 65.5 99 44.4
Glyma.10G217100 Glycine max HOM05D006547 ORTHO05D008112 3.5e-09 65.5 107 44.9
Potri.014G118300 Populus trichocarpa HOM05D006547 ORTHO05D008112 3.5e-09 65.5 81 51.9
CiPaw.08G087700 Carya illinoinensis HOM05D006547 ORTHO05D008112 4.6e-09 65.1 96 39.6
Sabra14G0087800 Salix brachista HOM05D006547 ORTHO05D008112 4.6e-09 65.1 109 43.1
MBI18_g22340_MAGBIO Magnolia biondii HOM05D006547 ORTHO05D008112 7.8e-09 64.3 103 42.7
Phvul.007G089100 Phaseolus vulgaris HOM05D006547 ORTHO05D008112 1.0e-08 63.9 77 51.9
Lalb_Chr03g0036161 Lupinus albus HOM05D006547 ORTHO05D008112 1.3e-08 63.5 92 42.4
PSO761G0312 Papaver somniferum HOM05D006547 ORTHO05D008112 1.3e-08 63.5 91 44.0
Sabra02G0162800 Salix brachista HOM05D006547 ORTHO05D008112 1.7e-08 63.2 89 48.3
PSO210G6541 Papaver somniferum HOM05D006547 ORTHO05D008112 2.3e-08 62.8 88 45.5
ATR0693G012 Amborella trichopoda HOM05D006547 ORTHO05D008112 3.0e-08 62.4 86 46.5
Gohir.D01G152800 Gossypium hirsutum HOM05D006547 ORTHO05D008112 3.9e-08 62.0 91 44.0
Nn4g25552 Nelumbo nucifera HOM05D006547 ORTHO05D008112 3.9e-08 62.0 107 36.4
Rhsim13G0003400 Rhododendron simsii HOM05D006547 ORTHO05D008112 3.9e-08 62.0 56 57.1
Sc05g0000320 Simmondsia chinensis HOM05D006547 ORTHO05D008112 3.9e-08 62.0 94 41.5
HanXRQChr10g0285031 Helianthus annuus HOM05D006547 ORTHO05D008112 5.1e-08 61.6 53 52.8
Sopen01g031050 Solanum pennellii HOM05D006547 ORTHO05D008112 5.1e-08 61.6 95 38.9
PGSC0003DMG400009058 Solanum tuberosum HOM05D006547 ORTHO05D008112 5.1e-08 61.6 95 37.9
PGSC0003DMG401007298 Solanum tuberosum HOM05D006547 ORTHO05D008112 5.1e-08 61.6 118 37.3
Gohir.A01G157750 Gossypium hirsutum HOM05D006547 ORTHO05D008112 6.6e-08 61.2 79 46.8
Solyc01g079270.1 Solanum lycopersicum HOM05D006547 ORTHO05D008112 6.6e-08 61.2 95 40.0
ECA247G3592 Erigeron canadensis HOM05D006547 ORTHO05D008112 8.7e-08 60.8 86 40.7
Nitab4.5_0000363g0200 Nicotiana tabacum HOM05D006547 ORTHO05D008112 1.1e-07 60.5 92 41.3
CsaV3_3G026610 Cucumis sativus L. HOM05D006547 ORTHO05D008112 1.5e-07 60.1 79 43.0
Gohir.A04G137350 Gossypium hirsutum HOM05D034510 ORTHO05D008112 1.5e-07 60.1 88 37.5
SGA_v2.0_scaffold334G49085 Striga asiatica HOM05D006547 ORTHO05D008112 1.5e-07 60.1 76 47.4
Gorai.002G189200 Gossypium raimondii HOM05D006547 ORTHO05D008112 1.9e-07 59.7 91 42.9
Solyc06g009510.1 Solanum lycopersicum HOM05D006547 ORTHO05D008112 1.9e-07 59.7 73 42.5
Migut.D00065 Erythranthe guttata HOM05D006547 ORTHO05D008112 2.5e-07 59.3 81 44.4
Hma1.2p1_0408F.1_g146550 Hydrangea macrophylla HOM05D006547 ORTHO05D008112 2.5e-07 59.3 64 46.9
MBI19_g03260_MAGBIO Magnolia biondii HOM05D001624 ORTHO05D001530 2.5e-07 59.3 66 43.9
Sopen06g004170 Solanum pennellii HOM05D006547 ORTHO05D008112 2.5e-07 59.3 73 42.5
Peaxi162Scf00058g00236 Petunia axillaris HOM05D006547 ORTHO05D008112 4.3e-07 58.5 55 52.7
Nitab4.5_0007407g0060 Nicotiana tabacum HOM05D006547 ORTHO05D008112 5.6e-07 58.2 63 46.0
MELO3C012934.2 Cucumis melo HOM05D006547 ORTHO05D008112 7.3e-07 57.8 79 40.5
Lsat_1_v5_gn_9_4661 Lactuca sativa HOM05D006547 ORTHO05D008112 7.3e-07 57.8 82 41.5
ClCG10G011560 Citrullus lanatus HOM05D006547 ORTHO05D008112 9.6e-07 57.4 84 36.9
Oeu044737.1 Olea europaea HOM05D006547 ORTHO05D008112 9.6e-07 57.4 84 39.3
SGA_v2.0_scaffold376G50290 Striga asiatica HOM05D006547 ORTHO05D008112 9.6e-07 57.4 55 54.5
Ciclev10006764m.g Citrus clementina HOM05D006547 ORTHO05D008112 1.6e-06 56.6 63 47.6
Actinidia25863 Actinidia chinensis HOM05D006547 ORTHO05D008112 2.1e-06 56.2 89 41.6
Gohir.D04G180550 Gossypium hirsutum HOM05D034510 ORTHO05D047560 2.1e-06 56.2 89 37.1
Gorai.012G173700 Gossypium raimondii HOM05D034510 ORTHO05D047560 2.1e-06 56.2 89 37.1
MSTRG.21702 Avicennia marina HOM05D006547 ORTHO05D008112 2.8e-06 55.8 84 40.5
Sc17g0000340 Simmondsia chinensis HOM05D006547 ORTHO05D008112 2.8e-06 55.8 120 32.5
Nn3g21744 Nelumbo nucifera HOM05D006547 ORTHO05D008112 3.6e-06 55.5 50 56.0
SalBow3G4324 Salvia bowleyana HOM05D006547 ORTHO05D008112 3.6e-06 55.5 81 42.0
Nitab4.5_0000222g0070 Nicotiana tabacum HOM05D006547 ORTHO05D008112 6.2e-06 54.7 64 46.9
Sed0017392 Sechium edule HOM05D006547 ORTHO05D008112 8.1e-06 54.3 74 39.2


User provided reference genes

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