Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p30540 Brassica napus HOM05D003545 ORTHO05D031779 3.2e-92 341.7 162 100.0
BcaC05g29263 Brassica carinata HOM05D003545 ORTHO05D024095 3.1e-55 218.8 153 72.5
C01p23170 Brassica napus HOM05D001404 ORTHO05D004720 3.7e-48 195.3 151 68.9
BcaC04g21066 Brassica carinata HOM05D000458 ORTHO05D000951 5.3e-47 191.4 135 73.3
C09p36080 Brassica napus HOM05D003545 ORTHO05D024095 2.6e-46 189.1 151 67.5
A02p20960 Brassica napus HOM05D003545 ORTHO05D031779 3.6e-43 178.7 169 59.8
BolC5t31394H Brassica oleracea HOM05D003545 ORTHO05D024095 1.8e-39 166.4 154 61.0
BcaC01g05074 Brassica carinata HOM05D003545 ORTHO05D004720 3.2e-36 155.6 160 57.5
BcaB01g03221 Brassica carinata HOM05D003545 ORTHO05D031779 2.0e-33 146.4 68 100.0
BraA09t40662Z Brassica rapa HOM05D003545 ORTHO05D004720 7.4e-33 144.4 144 58.3
A04p01940 Brassica napus HOM05D003545 ORTHO05D004720 1.3e-32 143.7 153 56.2
BraA04t15918Z Brassica rapa HOM05D003545 ORTHO05D004720 1.3e-32 143.7 153 56.2
BcaB02g07435 Brassica carinata HOM05D003545 ORTHO05D004720 1.1e-31 140.6 165 53.3
BcaB02g08203 Brassica carinata HOM05D003545 ORTHO05D004720 1.1e-31 140.6 145 57.9
BcaC07g40404 Brassica carinata HOM05D003545 ORTHO05D004720 1.1e-31 140.6 152 55.3
BcaC08g45018 Brassica carinata HOM05D003545 ORTHO05D004720 1.1e-31 140.6 165 53.3
A09p52330 Brassica napus HOM05D003545 ORTHO05D004720 1.1e-31 140.6 152 55.3
C06p26500 Brassica napus HOM05D003545 ORTHO05D004720 1.1e-31 140.6 165 53.3
C08p34990 Brassica napus HOM05D003545 ORTHO05D004720 1.1e-31 140.6 152 55.3
BolC6t37813H Brassica oleracea HOM05D003545 ORTHO05D004720 1.1e-31 140.6 165 53.3
BraA07t30135Z Brassica rapa HOM05D003545 ORTHO05D004720 1.1e-31 140.6 165 53.3
A07p24930 Brassica napus HOM05D003545 ORTHO05D004720 1.4e-31 140.2 164 53.7
BolC8t51103H Brassica oleracea HOM05D003545 ORTHO05D004720 1.8e-31 139.8 152 55.3
Sp5g03190 Schrenkiella parvula HOM05D003545 ORTHO05D004720 1.6e-30 136.7 144 56.9
Carub.0005s2672 Capsella rubella HOM05D003545 ORTHO05D004720 2.0e-30 136.3 145 55.2
AL5G42170 Arabidopsis lyrata HOM05D003545 ORTHO05D004720 3.5e-30 135.6 147 55.1
BcaC03g16226 Brassica carinata HOM05D003545 ORTHO05D011382 3.5e-30 135.6 152 54.6
Aa31LG10G14210 Aethionema arabicum HOM05D003545 ORTHO05D004720 4.5e-30 135.2 144 56.2
AT3G59990 Arabidopsis thaliana HOM05D003545 ORTHO05D004720 5.9e-30 134.8 147 55.1
Eucgr.E04344 Eucalyptus grandis HOM05D003545 ORTHO05D004720 5.9e-30 134.8 146 54.8
THA.LOC104804455 Tarenaya hassleriana HOM05D003545 ORTHO05D004720 7.7e-30 134.4 142 55.6
AL4G43110 Arabidopsis lyrata HOM05D003545 ORTHO05D004720 1.0e-29 134.0 152 52.6
Carub.0004s2675 Capsella rubella HOM05D003545 ORTHO05D004720 1.0e-29 134.0 150 52.7
CARHR170310 Cardamine hirsuta HOM05D003545 ORTHO05D004720 1.0e-29 134.0 145 54.5
BcaC01g05183 Brassica carinata HOM05D003545 ORTHO05D004720 1.3e-29 133.7 156 51.9
C03p29450 Brassica napus HOM05D003545 ORTHO05D004720 1.3e-29 133.7 156 51.9
Gorai.007G172000 Gossypium raimondii HOM05D003545 ORTHO05D004720 1.3e-29 133.7 154 51.3
Hund22664 Selenicereus undatus HOM05D003545 ORTHO05D004720 1.3e-29 133.7 144 53.5
Aa31LG1G25840 Aethionema arabicum HOM05D003545 ORTHO05D004720 1.7e-29 133.3 147 53.7
A03p24710 Brassica napus HOM05D003545 ORTHO05D004720 1.7e-29 133.3 152 52.6
Ciclev10020270m.g Citrus clementina HOM05D003545 ORTHO05D004720 1.7e-29 133.3 142 54.2
Eucgr.E00006 Eucalyptus grandis HOM05D003545 ORTHO05D004720 1.7e-29 133.3 143 51.7
QL02p099802 Quercus lobata HOM05D003545 ORTHO05D004720 2.2e-29 132.9 142 53.5
QL02p099813 Quercus lobata HOM05D003545 ORTHO05D004720 2.2e-29 132.9 142 53.5
CsaV3_3G017890 Cucumis sativus L. HOM05D003545 ORTHO05D004720 2.9e-29 132.5 142 52.8
Thhalv10005983m.g Eutrema salsugineum HOM05D003545 ORTHO05D004720 2.9e-29 132.5 138 56.5
arahy.Tifrunner.gnm1.ann1.J1JEGY Arachis hypogaea HOM05D003545 ORTHO05D004720 3.8e-29 132.1 145 53.1
Manes.01G007800 Manihot esculenta HOM05D003545 ORTHO05D004720 3.8e-29 132.1 145 53.1
GSVIVG01027489001 Vitis vinifera HOM05D003545 ORTHO05D004720 3.8e-29 132.1 145 53.8
BolC3t15293H Brassica oleracea HOM05D003545 ORTHO05D004720 5.0e-29 131.7 156 51.3
Dinv14603 Davidia involucrata HOM05D003545 ORTHO05D004720 5.0e-29 131.7 157 50.3
Thhalv10001459m.g Eutrema salsugineum HOM05D003545 ORTHO05D004720 5.0e-29 131.7 149 53.0
Gohir.A11G154800 Gossypium hirsutum HOM05D003545 ORTHO05D004720 5.0e-29 131.7 152 51.3
Nn1g09395 Nelumbo nucifera HOM05D003545 ORTHO05D004720 5.0e-29 131.7 147 53.7
PGR042G1967 Punica granatum HOM05D003545 ORTHO05D004720 5.0e-29 131.7 143 52.4
Thecc.01G176200 Theobroma cacao HOM05D003545 ORTHO05D004720 5.0e-29 131.7 152 50.7
arahy.Tifrunner.gnm1.ann1.UV5XRQ Arachis hypogaea HOM05D003545 ORTHO05D004720 6.5e-29 131.3 145 53.1
COL.COLO4_20004 Corchorus olitorius HOM05D003545 ORTHO05D004720 6.5e-29 131.3 144 53.5
Sp4g26260 Schrenkiella parvula HOM05D003545 ORTHO05D004720 6.5e-29 131.3 144 54.2
AT2G44180 Arabidopsis thaliana HOM05D003545 ORTHO05D004720 8.5e-29 131.0 144 53.5
EL10Ac3g06198 Beta vulgaris HOM05D003545 ORTHO05D004720 8.5e-29 131.0 152 50.7
Eucgr.H00238 Eucalyptus grandis HOM05D003545 ORTHO05D004720 8.5e-29 131.0 143 51.0
Gohir.D11G161700 Gossypium hirsutum HOM05D003545 ORTHO05D004720 8.5e-29 131.0 154 51.3
Sabra04G0056000 Salix brachista HOM05D003545 ORTHO05D004720 8.5e-29 131.0 142 53.5
SalBow3G0142 Salvia bowleyana HOM05D003545 ORTHO05D004720 8.5e-29 131.0 145 53.1
Aqoxy5G02074 Aquilegia oxysepala HOM05D003545 ORTHO05D004720 1.1e-28 130.6 145 53.8
CiPaw.05G050600 Carya illinoinensis HOM05D003545 ORTHO05D004720 1.1e-28 130.6 142 52.8
QL02p098432 Quercus lobata HOM05D003545 ORTHO05D004720 1.1e-28 130.6 150 50.0
CANSAT64G0507 Cannabis sativa HOM05D003545 ORTHO05D004720 1.5e-28 130.2 146 50.7
Duzib138G0328 Durio zibethinus HOM05D003545 ORTHO05D004720 1.5e-28 130.2 150 51.3
Sed0004430 Sechium edule HOM05D003545 ORTHO05D004720 1.5e-28 130.2 155 51.0
Sed0011009 Sechium edule HOM05D003545 ORTHO05D004720 1.5e-28 130.2 143 53.1
Atru.chr11.677 Acer truncatum HOM05D003545 ORTHO05D004720 1.9e-28 129.8 144 52.8
Aqoxy5G02072 Aquilegia oxysepala HOM05D003545 ORTHO05D004720 1.9e-28 129.8 144 52.8
ClCG05G010600 Citrullus lanatus HOM05D003545 ORTHO05D004720 1.9e-28 129.8 137 54.7
Nitab4.5_0002417g0010 Nicotiana tabacum HOM05D003545 ORTHO05D004720 1.9e-28 129.8 143 53.1
Nitab4.5_0011686g0010 Nicotiana tabacum HOM05D003545 ORTHO05D004720 1.9e-28 129.8 143 53.1
CAN.G911.7 Capsicum annuum HOM05D003545 ORTHO05D004720 2.5e-28 129.4 144 52.8
Cpa.g.sc9.232 Carica papaya HOM05D003545 ORTHO05D004720 2.5e-28 129.4 144 51.4
Cc03_g16260 Coffea canephora HOM05D003545 ORTHO05D004720 2.5e-28 129.4 145 52.4
Haze_01811 Corylus avellana HOM05D003545 ORTHO05D004720 2.5e-28 129.4 144 51.4
MELO3C020334.2 Cucumis melo HOM05D003545 ORTHO05D004720 2.5e-28 129.4 144 51.4
Duzib133G1379 Durio zibethinus HOM05D003545 ORTHO05D004720 2.5e-28 129.4 152 50.7
FvH4_5g31110 Fragaria vesca HOM05D003545 ORTHO05D004720 2.5e-28 129.4 145 51.7
Lj1A1040G36 Lonicera japonica HOM05D003545 ORTHO05D004720 2.5e-28 129.4 144 52.8
Lj6g0020499 Lotus japonicus HOM05D003545 ORTHO05D004720 2.5e-28 129.4 144 50.7
Potri.004G084800 Populus trichocarpa HOM05D003545 ORTHO05D004720 2.5e-28 129.4 142 53.5
Potri.017G133200 Populus trichocarpa HOM05D003545 ORTHO05D004720 2.5e-28 129.4 143 53.8
Rhsim09G0000700 Rhododendron simsii HOM05D003545 ORTHO05D004720 3.2e-28 129.0 145 51.7
Sopen01g002780 Solanum pennellii HOM05D003545 ORTHO05D004720 3.2e-28 129.0 144 52.1
MSTRG.24538 Avicennia marina HOM05D003545 ORTHO05D004720 4.2e-28 128.6 145 51.7
Glyma.19G001700 Glycine max HOM05D003545 ORTHO05D004720 4.2e-28 128.6 144 50.0
Lalb_Chr24g0392661 Lupinus albus HOM05D003545 ORTHO05D004720 4.2e-28 128.6 156 49.4
Oeu050295.1 Olea europaea HOM05D003545 ORTHO05D004720 4.2e-28 128.6 144 52.8
Peaxi162Scf00184g00109 Petunia axillaris HOM05D003545 ORTHO05D004720 4.2e-28 128.6 147 52.4
PGSC0003DMG400021374 Solanum tuberosum HOM05D003545 ORTHO05D004720 4.2e-28 128.6 143 52.4
SGA_v2.0_scaffold334G49082 Striga asiatica HOM05D003545 ORTHO05D004720 4.2e-28 128.6 143 52.4
VMungo1080G0943 Vigna mungo HOM05D003545 ORTHO05D004720 4.2e-28 128.6 152 48.7
CARHR139340 Cardamine hirsuta HOM05D003545 ORTHO05D004720 5.5e-28 128.3 144 52.1
CiPaw.06G144300 Carya illinoinensis HOM05D003545 ORTHO05D004720 5.5e-28 128.3 147 49.7
CDE07G0638 Ceratophyllum demersum HOM05D003545 ORTHO05D004720 5.5e-28 128.3 145 50.3
AUR62023680 Chenopodium quinoa HOM05D003545 ORTHO05D004720 5.5e-28 128.3 152 51.3
Glyma.05G001900 Glycine max HOM05D003545 ORTHO05D004720 5.5e-28 128.3 144 50.0
Rhsim09G0038700 Rhododendron simsii HOM05D003545 ORTHO05D004720 5.5e-28 128.3 145 51.7
AUR62002514 Chenopodium quinoa HOM05D003545 ORTHO05D004720 7.2e-28 127.9 152 50.7
HanXRQChr12g0379661 Helianthus annuus HOM05D003545 ORTHO05D004720 7.2e-28 127.9 145 52.4
Cc03_g16230 Coffea canephora HOM05D003545 ORTHO05D004720 9.4e-28 127.5 157 49.7
FvH4_5g31120 Fragaria vesca HOM05D003545 ORTHO05D004720 9.4e-28 127.5 144 50.0
FAN18G2207 Fragaria x ananassa HOM05D003545 ORTHO05D004720 9.4e-28 127.5 144 50.0
MD17G1285400 Malus domestica HOM05D003545 ORTHO05D004720 9.4e-28 127.5 142 50.7
Psat6g212640 Pisum sativum HOM05D003545 ORTHO05D004720 9.4e-28 127.5 144 50.7
TWI75G0601 Tripterygium wilfordii HOM05D003545 ORTHO05D004720 9.4e-28 127.5 143 51.7
Migut.N01930 Erythranthe guttata HOM05D003545 ORTHO05D004720 1.2e-27 127.1 144 52.1
RcHm_v2.0_Chr1g0328121 Rosa chinensis HOM05D003545 ORTHO05D004720 1.2e-27 127.1 144 50.0
PSO782G1687 Papaver somniferum HOM05D003545 ORTHO05D004720 1.6e-27 126.7 147 50.3
BolC2t10031H Brassica oleracea HOM05D003545 ORTHO05D011382 2.1e-27 126.3 82 78.0
CSS0015354 Camellia sinensis var. sinensis HOM05D003545 ORTHO05D004720 2.1e-27 126.3 145 51.0
CDE04G0368 Ceratophyllum demersum HOM05D003545 ORTHO05D004720 2.1e-27 126.3 151 49.0
PSO063G3599 Papaver somniferum HOM05D003545 ORTHO05D004720 2.1e-27 126.3 146 50.7
Os12g0628500 Oryza sativa ssp. japonica HOM05D003545 ORTHO05D004720 2.7e-27 125.9 153 48.4
TAR636G2827 Trochodendron aralioides HOM05D003545 ORTHO05D004720 2.7e-27 125.9 165 47.9
BraA03t11677Z Brassica rapa HOM05D003545 ORTHO05D004720 3.6e-27 125.6 95 67.4
Medtr1g105940 Medicago truncatula HOM05D003545 ORTHO05D004720 3.6e-27 125.6 146 49.3
Prupe.2G330300 Prunus persica HOM05D003545 ORTHO05D004720 3.6e-27 125.6 142 50.7
RcHm_v2.0_Chr1g0328111 Rosa chinensis HOM05D003545 ORTHO05D004720 3.6e-27 125.6 140 50.0
Sc10g0003580 Simmondsia chinensis HOM05D003545 ORTHO05D004720 3.6e-27 125.6 144 49.3
SGA_v2.0_scaffold286G47136 Striga asiatica HOM05D003545 ORTHO05D004720 3.6e-27 125.6 144 51.4
Ca_11016_v3 Cicer arietinum L. HOM05D003545 ORTHO05D004720 4.7e-27 125.2 144 48.6
Medtr4g109100 Medicago truncatula HOM05D003545 ORTHO05D004720 4.7e-27 125.2 144 50.0
THA.LOC104802530 Tarenaya hassleriana HOM05D003545 ORTHO05D004720 4.7e-27 125.2 87 72.4
TPR.G21147 Trifolium pratense HOM05D003545 ORTHO05D004720 4.7e-27 125.2 144 50.0
ATR0594G119 Amborella trichopoda HOM05D003545 ORTHO05D004720 6.1e-27 124.8 144 51.4
Zm00001eb173260 Zea mays HOM05D003545 ORTHO05D004720 6.1e-27 124.8 156 50.0
FAN08G3116 Fragaria x ananassa HOM05D003545 ORTHO05D004720 8.0e-27 124.4 144 49.3
Lsat_1_v5_gn_5_37781 Lactuca sativa HOM05D003545 ORTHO05D004720 8.0e-27 124.4 144 52.1
Mapoly0009s0208 Marchantia polymorpha HOM05D003545 ORTHO05D004720 1.0e-26 124.0 150 50.0
Os08g0542000 Oryza sativa ssp. japonica HOM05D003545 ORTHO05D004720 1.0e-26 124.0 156 49.4
BcaC08g45078 Brassica carinata HOM05D003545 ORTHO05D004720 1.4e-26 123.6 162 48.1
C06p26870 Brassica napus HOM05D003545 ORTHO05D004720 1.4e-26 123.6 162 48.1
BolC6t37861H Brassica oleracea HOM05D003545 ORTHO05D004720 1.4e-26 123.6 162 48.1
DCAR_005465 Daucus carota HOM05D003545 ORTHO05D004720 1.4e-26 123.6 144 51.4
SEGI_07894 Sequoiadendron giganteum HOM05D003545 ORTHO05D004720 1.4e-26 123.6 145 50.3
FAN13G2420 Fragaria x ananassa HOM05D003545 ORTHO05D004720 2.3e-26 122.9 144 48.6
ECA246G2273 Erigeron canadensis HOM05D003545 ORTHO05D004720 3.0e-26 122.5 145 49.7
Pp3c18_2250 Physcomitrium patens HOM05D003545 ORTHO05D004720 4.0e-26 122.1 142 50.0
Pp3c18_2370 Physcomitrium patens HOM05D003545 ORTHO05D004720 4.0e-26 122.1 145 49.0
C02p40050 Brassica napus HOM05D003545 ORTHO05D011382 5.2e-26 121.7 82 75.6
BolC9t56447H Brassica oleracea HOM05D003545 ORTHO05D024095 1.1e-25 120.6 126 56.3
MSTRG.22061 Avicennia marina HOM05D003545 ORTHO05D004720 2.0e-25 119.8 144 49.3
Rhsim09G0038900 Rhododendron simsii HOM05D009719 ORTHO05D003904 2.6e-25 119.4 87 66.7
vmacro00738 Vaccinium macrocarpon HOM05D003545 ORTHO05D004720 2.6e-25 119.4 87 67.8
SMO230G0032 Selaginella moellendorffii HOM05D003545 ORTHO05D004720 1.7e-24 116.7 155 47.1
SMO340G0246 Selaginella moellendorffii HOM05D003545 ORTHO05D004720 1.7e-24 116.7 155 47.1
MBI03_g28950_MAGBIO Magnolia biondii HOM05D003545 ORTHO05D004720 2.2e-24 116.3 87 65.5
Mapoly0009s0058 Marchantia polymorpha HOM05D003545 ORTHO05D004720 2.2e-24 116.3 153 45.8
CBR_g52643 Chara braunii HOM05D003545 ORTHO05D004720 8.2e-24 114.4 153 45.1
AagrBONN_evm.TU.Sc2ySwM_362.208 Anthoceros agrestis HOM05D003545 ORTHO05D004720 2.0e-22 109.8 143 45.5
SMO367G0222 Selaginella moellendorffii HOM05D003545 ORTHO05D004720 2.0e-22 109.8 155 46.5
C04p32790 Brassica napus HOM05D003545 ORTHO05D004720 2.7e-22 109.4 145 49.0
HPP92_003411 Vanilla planifolia HOM05D003545 ORTHO05D004720 2.7e-22 109.4 87 62.1
BcaC02g10099 Brassica carinata HOM05D003545 ORTHO05D004720 3.5e-22 109.0 149 48.3
BolC4t24842H Brassica oleracea HOM05D003545 ORTHO05D004720 3.5e-22 109.0 149 48.3
PRCOL_00002364 Prasinoderma coloniale HOM05D003545 ORTHO05D004720 3.8e-21 105.5 143 42.7
Solyc01g006800.4 Solanum lycopersicum HOM05D003545 ORTHO05D004720 6.5e-21 104.8 76 69.7
C01p52430 Brassica napus HOM05D003545 ORTHO05D024095 8.5e-21 104.4 92 62.0
AL4G43130 Arabidopsis lyrata HOM05D003545 ORTHO05D004720 1.1e-20 104.0 141 41.8
Cre16.g652100 Chlamydomonas reinhardtii HOM05D003545 ORTHO05D004720 1.8e-18 96.7 148 40.5
MCO01G510 Micromonas commoda HOM05D003545 ORTHO05D004720 2.6e-17 92.8 117 41.9
Haze_26740 Corylus avellana HOM05D003545 ORTHO05D004720 9.8e-17 90.9 87 51.7
AagrBONN_evm.TU.Sc2ySwM_362.217 Anthoceros agrestis HOM05D003545 ORTHO05D004720 1.7e-13 80.1 63 65.1
unitig_747.g21724 Utricularia gibba HOM05D003545 ORTHO05D004720 1.6e-11 73.6 38 84.2
AL1G66220 Arabidopsis lyrata HOM05D003545 ORTHO05D079241 2.7e-11 72.8 57 59.6
BcaC07g40535 Brassica carinata HOM05D003545 ORTHO05D004720 1.8e-10 70.1 47 68.1
RcHm_v2.0_Chr1g0332011 Rosa chinensis HOM05D003545 ORTHO05D004720 2.0e-09 66.6 93 44.1
RcHm_v2.0_Chr2g0090851 Rosa chinensis HOM05D003545 ORTHO05D011382 2.2e-08 63.2 74 47.3


User provided reference genes

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