Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p30020 Brassica napus HOM05D005612 ORTHO05D007014 3.1e-226 788.1 395 100.0
BraA03t11718Z Brassica rapa HOM05D005612 ORTHO05D007014 1.5e-215 752.7 396 94.9
A03p25180 Brassica napus HOM05D005612 ORTHO05D007014 6.3e-211 737.3 396 92.9
BcaB01g03271 Brassica carinata HOM05D005612 ORTHO05D007014 9.1e-210 733.4 395 92.2
BcaC01g05140 Brassica carinata HOM05D005612 ORTHO05D007014 4.4e-204 714.5 396 90.7
BolC3t15349H Brassica oleracea HOM05D005612 ORTHO05D007014 4.4e-204 714.5 396 90.7
Sp4g27340 Schrenkiella parvula HOM05D005612 ORTHO05D007014 1.7e-203 712.6 395 90.6
Thhalv10001485m.g Eutrema salsugineum HOM05D005612 ORTHO05D007014 3.8e-200 701.4 395 89.1
AT2G45320 Arabidopsis thaliana HOM05D005612 ORTHO05D007014 6.8e-189 664.1 395 84.3
Carub.0004s2795 Capsella rubella HOM05D005612 ORTHO05D007014 6.8e-189 664.1 395 84.3
AL4G44420 Arabidopsis lyrata HOM05D005612 ORTHO05D007014 1.1e-186 656.8 386 85.5
THA.LOC104827614 Tarenaya hassleriana HOM05D005612 ORTHO05D007014 1.7e-163 579.7 400 73.5
QL08p052678 Quercus lobata HOM05D005612 ORTHO05D007014 3.4e-140 502.3 393 63.1
Gorai.004G162600 Gossypium raimondii HOM05D005612 ORTHO05D007014 4.5e-140 501.9 408 60.8
Potri.014G068500 Populus trichocarpa HOM05D005612 ORTHO05D007014 1.3e-139 500.4 400 65.5
GSVIVG01027677001 Vitis vinifera HOM05D005612 ORTHO05D007014 1.7e-139 500.0 391 62.9
Duzib138G1608 Durio zibethinus HOM05D005612 ORTHO05D007014 3.8e-139 498.8 408 61.3
Atru.chr2.2479 Acer truncatum HOM05D005612 ORTHO05D007014 1.1e-138 497.3 396 62.4
Gohir.A08G135500 Gossypium hirsutum HOM05D005612 ORTHO05D007014 1.9e-138 496.5 409 60.1
Thecc.01G378200 Theobroma cacao HOM05D005612 ORTHO05D007014 4.2e-138 495.4 410 61.5
TAR375G1134 Trochodendron aralioides HOM05D005612 ORTHO05D007014 7.1e-138 494.6 393 63.6
Prupe.6G155400 Prunus persica HOM05D005612 ORTHO05D007014 1.6e-137 493.4 392 64.0
FAN28G0581 Fragaria x ananassa HOM05D005612 ORTHO05D007014 3.5e-137 492.3 391 64.2
TWI14G1300 Tripterygium wilfordii HOM05D005612 ORTHO05D007014 3.5e-137 492.3 393 63.4
vmacro13411 Vaccinium macrocarpon HOM05D005612 ORTHO05D007014 3.5e-137 492.3 392 63.8
Cpa.g.sc18.108 Carica papaya HOM05D005612 ORTHO05D007014 4.6e-137 491.9 357 69.7
Manes.01G266600 Manihot esculenta HOM05D005612 ORTHO05D007014 4.6e-137 491.9 391 63.7
CANSAT01G1400 Cannabis sativa HOM05D005612 ORTHO05D007014 7.9e-137 491.1 390 64.9
Ciclev10010228m.g Citrus clementina HOM05D005612 ORTHO05D007014 3.9e-136 488.8 387 64.1
COL.COLO4_12531 Corchorus olitorius HOM05D005612 ORTHO05D007014 5.1e-136 488.4 376 66.2
DCAR_008555 Daucus carota HOM05D005612 ORTHO05D007014 1.1e-135 487.3 392 63.0
Eucgr.E01443 Eucalyptus grandis HOM05D005612 ORTHO05D007014 1.5e-135 486.9 387 62.0
FAN28G2973 Fragaria x ananassa HOM05D005612 ORTHO05D007014 4.3e-135 485.3 391 63.4
CSS0047351 Camellia sinensis var. sinensis HOM05D005612 ORTHO05D007014 5.7e-135 485.0 392 62.2
CsaV3_3G009760 Cucumis sativus L. HOM05D005612 ORTHO05D007014 5.7e-135 485.0 391 63.2
FvH4_1g28100 Fragaria vesca HOM05D005612 ORTHO05D007014 7.4e-135 484.6 391 63.4
Sed0014004 Sechium edule HOM05D005612 ORTHO05D007014 7.4e-135 484.6 391 62.9
FAN23G2738 Fragaria x ananassa HOM05D005612 ORTHO05D007014 9.7e-135 484.2 391 63.2
Nitab4.5_0000264g0010 Nicotiana tabacum HOM05D005612 ORTHO05D007014 2.8e-134 482.6 392 62.5
Nn4g26368 Nelumbo nucifera HOM05D005612 ORTHO05D007014 3.7e-134 482.3 394 62.4
Solyc08g006610.3 Solanum lycopersicum HOM05D005612 ORTHO05D007014 3.7e-134 482.3 391 61.9
EL10Ac4g10240 Beta vulgaris HOM05D005612 ORTHO05D007014 4.8e-134 481.9 386 64.5
AUR62000130 Chenopodium quinoa HOM05D005612 ORTHO05D007014 6.3e-134 481.5 395 62.8
RcHm_v2.0_Chr3g0497141 Rosa chinensis HOM05D005612 ORTHO05D007014 6.3e-134 481.5 391 63.4
FAN26G0204 Fragaria x ananassa HOM05D005612 ORTHO05D007014 6.9e-133 478.0 413 60.0
ClCG05G002330 Citrullus lanatus HOM05D005612 ORTHO05D007014 1.2e-132 477.2 407 60.4
Lalb_Chr03g0039601 Lupinus albus HOM05D005612 ORTHO05D007014 1.2e-132 477.2 385 62.6
CiPaw.01G263000 Carya illinoinensis HOM05D005612 ORTHO05D007014 2.0e-132 476.5 392 62.2
Actinidia12252 Actinidia chinensis HOM05D005612 ORTHO05D007014 2.6e-132 476.1 389 60.9
Lj3g0004128 Lotus japonicus HOM05D005612 ORTHO05D007014 3.4e-132 475.7 386 62.7
Phvul.011G138100 Phaseolus vulgaris HOM05D005612 ORTHO05D007014 5.9e-132 474.9 390 61.8
Sopen08g002560 Solanum pennellii HOM05D005612 ORTHO05D007014 7.6e-132 474.6 391 61.4
MSTRG.17178 Avicennia marina HOM05D005612 ORTHO05D007014 1.3e-131 473.8 388 59.5
Glyma.12G134000 Glycine max HOM05D005612 ORTHO05D007014 1.3e-131 473.8 386 62.2
Peaxi162Scf00045g01936 Petunia axillaris HOM05D005612 ORTHO05D007014 1.3e-131 473.8 390 60.8
Gohir.D08G156300 Gossypium hirsutum HOM05D005612 ORTHO05D007014 1.7e-131 473.4 344 67.4
Aqoxy3G02061 Aquilegia oxysepala HOM05D005612 ORTHO05D007014 2.9e-131 472.6 394 61.9
MD00G1094900 Malus domestica HOM05D005612 ORTHO05D007014 5.0e-131 471.9 400 61.2
PSO339G2081 Papaver somniferum HOM05D005612 ORTHO05D007014 5.0e-131 471.9 389 61.7
Aqoxy1G04104 Aquilegia oxysepala HOM05D005612 ORTHO05D007014 6.5e-131 471.5 394 61.9
TPR.G17234 Trifolium pratense HOM05D005612 ORTHO05D007014 6.5e-131 471.5 385 61.8
Hma1.2p1_0511F.1_g169190 Hydrangea macrophylla HOM05D005612 ORTHO05D007014 8.5e-131 471.1 393 61.1
arahy.Tifrunner.gnm1.ann1.39QM8U Arachis hypogaea HOM05D005612 ORTHO05D007014 1.4e-130 470.3 389 61.2
Manes.05G046700 Manihot esculenta HOM05D005612 ORTHO05D007014 2.5e-130 469.5 391 61.9
Hund07502 Selenicereus undatus HOM05D005612 ORTHO05D007014 3.2e-130 469.2 410 59.3
Psat0s2995g0040 Pisum sativum HOM05D005612 ORTHO05D007014 4.2e-130 468.8 389 61.4
Hma1.2p1_2025F.1_g311480 Hydrangea macrophylla HOM05D005612 ORTHO05D007014 5.5e-130 468.4 393 60.8
Migut.B01623 Erythranthe guttata HOM05D005612 ORTHO05D007014 9.4e-130 467.6 388 59.3
PSO384G4101 Papaver somniferum HOM05D005612 ORTHO05D007014 9.4e-130 467.6 388 61.9
Dinv43696 Davidia involucrata HOM05D005612 ORTHO05D007014 1.6e-129 466.8 391 60.6
arahy.Tifrunner.gnm1.ann1.Q1YE57 Arachis hypogaea HOM05D005612 ORTHO05D007014 3.6e-129 465.7 390 60.8
Glyma.06G270700 Glycine max HOM05D005612 ORTHO05D007014 4.6e-129 465.3 386 60.6
PGR042G0232 Punica granatum HOM05D005612 ORTHO05D007014 3.9e-128 462.2 381 61.9
Cc02_g24020 Coffea canephora HOM05D005612 ORTHO05D007014 6.7e-128 461.5 392 60.5
CAN.G530.1 Capsicum annuum HOM05D005612 ORTHO05D007014 1.9e-127 459.9 391 60.1
Medtr4g053430 Medicago truncatula HOM05D005612 ORTHO05D007014 3.3e-127 459.1 347 67.4
Haze_16797 Corylus avellana HOM05D005612 ORTHO05D007014 7.4e-127 458.0 346 64.7
Lalb_Chr01g0021461 Lupinus albus HOM05D005612 ORTHO05D007014 7.4e-127 458.0 381 60.9
ECA236G2759 Erigeron canadensis HOM05D005612 ORTHO05D007014 1.3e-126 457.2 392 59.4
Cfa015219 Carpinus fangiana HOM05D005612 ORTHO05D007014 1.4e-125 453.8 392 58.4
Lsat_1_v5_gn_7_9741 Lactuca sativa HOM05D005612 ORTHO05D007014 1.4e-125 453.8 359 64.3
unitig_749.g14376 Utricularia gibba HOM05D005612 ORTHO05D007014 1.0e-123 447.6 388 58.5
Lsat_1_v5_gn_8_86120 Lactuca sativa HOM05D005612 ORTHO05D007014 3.2e-122 442.6 352 63.4
Sabra14G0048200 Salix brachista HOM05D005612 ORTHO05D007014 5.7e-119 431.8 393 60.6
Oeu055499.1 Olea europaea HOM05D005612 ORTHO05D007014 2.2e-118 429.9 380 58.7
vmacro21020 Vaccinium macrocarpon HOM05D005612 ORTHO05D007014 2.2e-118 429.9 390 58.7
Nitab4.5_0005450g0010 Nicotiana tabacum HOM05D005612 ORTHO05D007014 1.4e-117 427.2 392 57.7
SalBow5G3218 Salvia bowleyana HOM05D005612 ORTHO05D007014 1.4e-117 427.2 352 60.5
HanXRQChr04g0122751 Helianthus annuus HOM05D005612 ORTHO05D007014 1.8e-117 426.8 392 57.4
Ah.04g161950 Amaranthus hybridus HOM05D004275 ORTHO05D005720 1.0e-115 421.0 413 54.2
Ca_19396_v3 Cicer arietinum L. HOM05D005612 ORTHO05D007014 2.2e-115 419.9 337 62.6
Lj7C530T5 Lonicera japonica HOM05D005612 ORTHO05D007014 1.0e-112 411.0 424 51.7
Zm00001eb195050 Zea mays HOM05D005612 ORTHO05D007014 8.8e-112 407.9 396 55.6
Sc16g0011470 Simmondsia chinensis HOM05D005612 ORTHO05D007014 4.4e-111 405.6 345 61.4
AUR62019310 Chenopodium quinoa HOM05D005612 ORTHO05D007014 1.0e-107 394.4 263 72.2
MELO3C006197.2 Cucumis melo HOM05D005612 ORTHO05D007014 1.7e-107 393.7 338 60.9
CARHR140520 Cardamine hirsuta HOM05D005612 ORTHO05D007014 1.5e-106 390.6 200 93.5
PGSC0003DMG400026305 Solanum tuberosum HOM05D005612 ORTHO05D007014 2.1e-105 386.7 310 62.9
CDE07G1659 Ceratophyllum demersum HOM05D005612 ORTHO05D007014 4.7e-105 385.6 344 57.6
Aa31LG1G26830 Aethionema arabicum HOM05D005612 ORTHO05D007014 1.4e-101 374.0 195 88.2
VMungo1127G0102 Vigna mungo HOM05D005612 ORTHO05D007014 7.7e-100 368.2 251 69.3
ATR1100G025 Amborella trichopoda HOM05D005612 ORTHO05D007014 1.4e-93 347.4 305 58.7
unitig_76.g29085 Utricularia gibba HOM05D005612 ORTHO05D007014 4.5e-92 342.4 385 48.3
ATR0686G054 Amborella trichopoda HOM05D005612 ORTHO05D007014 2.8e-86 323.2 280 58.2
MBI14_g08144_MAGBIO Magnolia biondii HOM05D005612 ORTHO05D007014 6.3e-86 322.0 248 64.5
Duzib138G0844 Durio zibethinus HOM05D005612 ORTHO05D007014 7.0e-77 292.0 163 81.0
CiPaw.09G176500 Carya illinoinensis HOM05D005612 ORTHO05D007014 5.0e-75 285.8 327 47.4
CARHR140530 Cardamine hirsuta HOM05D005612 ORTHO05D007014 8.0e-73 278.5 196 76.5
SMO119G0175 Selaginella moellendorffii HOM05D005612 ORTHO05D007014 1.7e-70 270.8 280 46.8
Zm00001eb012290 Zea mays HOM05D005612 ORTHO05D007014 8.9e-64 248.4 187 64.2
SGA_v2.0_scaffold153G37000 Striga asiatica HOM05D005612 ORTHO05D007014 4.4e-63 246.1 225 60.9
Zm00001eb249030 Zea mays HOM05D005612 ORTHO05D007014 7.5e-63 245.4 236 55.9
FAN19G0199 Fragaria x ananassa HOM05D005612 ORTHO05D007014 3.3e-58 229.9 130 77.7
AagrBONN_evm.TU.Sc2ySwM_117.669 Anthoceros agrestis HOM05D005612 ORTHO05D007014 3.4e-55 219.9 215 48.4
Dinv32369 Davidia involucrata HOM05D005612 ORTHO05D007014 3.9e-51 206.5 217 54.8
MSTRG.28297 Avicennia marina HOM05D005612 ORTHO05D007014 1.2e-47 194.9 113 74.3
Pp3c17_6010 Physcomitrium patens HOM05D005612 ORTHO05D007014 2.0e-47 194.1 201 47.3
Medtr8g102040 Medicago truncatula HOM05D005612 ORTHO05D007014 7.6e-39 165.6 131 58.8
Zm00001eb385140 Zea mays HOM05D005612 ORTHO05D007014 1.7e-38 164.5 132 60.6
Zm00001eb084960 Zea mays HOM05D005612 ORTHO05D007014 2.2e-38 164.1 132 60.6
Medtr8g102045 Medicago truncatula HOM05D005612 ORTHO05D007014 1.5e-34 151.4 135 60.7
Zm00001eb270960 Zea mays HOM05D005612 ORTHO05D002685 1.9e-29 134.4 84 73.8
Oeu011925.1 Olea europaea HOM05D005612 ORTHO05D007014 1.6e-28 131.3 197 39.1
Gohir.A08G135200 Gossypium hirsutum HOM05D005612 ORTHO05D007014 2.1e-28 131.0 162 43.8
Rhsim01G0149000 Rhododendron simsii HOM05D005612 ORTHO05D007014 6.0e-28 129.4 229 34.5
SEGI_33395 Sequoiadendron giganteum HOM05D005612 ORTHO05D007014 3.7e-25 120.2 151 44.4
TAR626G0370 Trochodendron aralioides HOM05D005612 ORTHO05D007014 4.0e-24 116.7 63 82.5
Glyma.20G076400 Glycine max HOM05D005612 ORTHO05D007014 5.8e-23 112.8 74 67.6
Zm00001eb321930 Zea mays HOM05D005612 ORTHO05D007014 3.2e-21 107.1 98 56.1
Gohir.A08G135550 Gossypium hirsutum HOM05D005612 ORTHO05D007014 2.7e-20 104.0 97 55.7
Haze_18350 Corylus avellana HOM05D005612 ORTHO05D007014 2.2e-17 94.4 72 66.7
MD15G1255900 Malus domestica HOM05D001392 ORTHO05D036605 4.5e-15 86.7 45 82.2
MBI14_g08143_MAGBIO Magnolia biondii HOM05D005612 ORTHO05D007014 2.1e-12 77.8 97 47.4
Lalb_Chr08g0243441 Lupinus albus HOM05D005612 ORTHO05D007014 3.6e-12 77.0 45 71.1
Os06g0571300 Oryza sativa ssp. japonica HOM05D005612 ORTHO05D007014 2.2e-09 67.8 92 45.7
Dinv39084 Davidia involucrata HOM05D005612 ORTHO05D007014 1.4e-08 65.1 105 34.3
Lalb_Chr16g0388221 Lupinus albus HOM05D005612 ORTHO05D007014 4.5e-07 60.1 35 65.7


User provided reference genes

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