Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p29590 Brassica napus HOM05D005212 ORTHO05D006353 2.1e-138 495.7 255 100.0
BolC3t15307H Brassica oleracea HOM05D005212 ORTHO05D006353 1.2e-122 443.4 255 92.2
BcaC01g05169 Brassica carinata HOM05D005212 ORTHO05D006353 2.4e-118 429.1 287 82.6
Thhalv10001552m.g Eutrema salsugineum HOM05D005212 ORTHO05D006353 2.1e-82 309.7 303 64.0
Sp4g26600 Schrenkiella parvula HOM05D005212 ORTHO05D006353 2.7e-82 309.3 303 64.4
BraA04t18796Z Brassica rapa HOM05D000073 ORTHO05D000033 3.8e-76 288.9 309 59.9
BcaC02g07097 Brassica carinata HOM05D005212 ORTHO05D006353 5.0e-76 288.5 298 61.1
AL4G43530 Arabidopsis lyrata HOM05D005212 ORTHO05D006353 8.6e-76 287.7 304 60.5
Carub.0004s2707 Capsella rubella HOM05D005212 ORTHO05D006353 2.5e-75 286.2 297 60.9
BolC4t28609H Brassica oleracea HOM05D000073 ORTHO05D006353 4.2e-75 285.4 296 60.8
AT2G44510 Arabidopsis thaliana HOM05D005212 ORTHO05D006353 7.2e-75 284.6 303 59.1
BcaB06g29383 Brassica carinata HOM05D005212 ORTHO05D006353 1.2e-74 283.9 212 74.5
CARHR139690 Cardamine hirsuta HOM05D005212 ORTHO05D006353 1.2e-74 283.9 297 59.3
C04p71050 Brassica napus HOM05D000073 ORTHO05D006698 2.0e-72 276.6 293 59.7
A04p33360 Brassica napus HOM05D000073 ORTHO05D006698 2.4e-70 269.6 295 58.6
Aa31LG1G21440 Aethionema arabicum HOM05D005212 ORTHO05D006353 2.9e-63 246.1 219 66.2
THA.LOC104816387 Tarenaya hassleriana HOM05D005212 ORTHO05D006353 2.0e-61 240.0 213 63.8
BcaB01g03308 Brassica carinata HOM05D005212 ORTHO05D006353 2.9e-55 219.5 269 56.1
BcaNung07052 Brassica carinata HOM05D005212 ORTHO05D006353 5.1e-52 208.8 207 62.3
Ciclev10017606m.g Citrus clementina HOM05D005212 ORTHO05D006353 6.2e-50 201.8 220 54.5
Lalb_Chr07g0187701 Lupinus albus HOM05D005212 ORTHO05D006353 6.8e-49 198.4 213 55.9
Psat7g082520 Pisum sativum HOM05D005212 ORTHO05D006353 6.8e-49 198.4 214 55.1
Medtr3g088850 Medicago truncatula HOM05D005212 ORTHO05D006353 2.0e-48 196.8 213 51.6
Solyc04g007850.3 Solanum lycopersicum HOM05D005212 ORTHO05D006353 5.8e-48 195.3 214 51.9
CAN.G458.6 Capsicum annuum HOM05D005212 ORTHO05D006353 7.6e-48 194.9 214 52.8
AL6G13400 Arabidopsis lyrata HOM05D005212 ORTHO05D006353 9.9e-48 194.5 192 61.5
Migut.E00446 Erythranthe guttata HOM05D005212 ORTHO05D006353 9.9e-48 194.5 214 53.3
Nitab4.5_0009115g0010 Nicotiana tabacum HOM05D005212 ORTHO05D006353 9.9e-48 194.5 213 51.6
Atru.chr12.1198 Acer truncatum HOM05D005212 ORTHO05D006353 1.3e-47 194.1 218 52.3
Sopen04g002980 Solanum pennellii HOM05D005212 ORTHO05D006353 1.3e-47 194.1 214 51.9
PGSC0003DMG400029477 Solanum tuberosum HOM05D005212 ORTHO05D006353 1.7e-47 193.7 214 51.4
Medtr3g096970 Medicago truncatula HOM05D005212 ORTHO05D006353 4.9e-47 192.2 214 52.8
TPR.G5141 Trifolium pratense HOM05D005212 ORTHO05D006353 4.9e-47 192.2 214 53.3
Aqoxy7G01425 Aquilegia oxysepala HOM05D005212 ORTHO05D006353 6.4e-47 191.8 212 53.8
Ca_24783_v3 Cicer arietinum L. HOM05D005212 ORTHO05D006353 8.3e-47 191.4 214 52.8
Ciclev10028815m.g Citrus clementina HOM05D005212 ORTHO05D006353 8.3e-47 191.4 217 52.5
Prupe.8G002300 Prunus persica HOM05D005212 ORTHO05D006353 1.1e-46 191.0 212 52.8
EL10Ac9g21945 Beta vulgaris HOM05D005212 ORTHO05D006353 1.4e-46 190.7 270 46.7
Lj4g0012207 Lotus japonicus HOM05D005212 ORTHO05D006353 1.4e-46 190.7 212 54.7
Prupe.1G329700 Prunus persica HOM05D005212 ORTHO05D006353 1.9e-46 190.3 212 52.4
Thecc.04G190200 Theobroma cacao HOM05D005212 ORTHO05D006353 1.9e-46 190.3 213 53.1
CiPaw.05G194300 Carya illinoinensis HOM05D005212 ORTHO05D006353 3.2e-46 189.5 213 53.1
CSS0012951 Camellia sinensis var. sinensis HOM05D005212 ORTHO05D006353 4.1e-46 189.1 213 52.1
Potri.001G461100 Populus trichocarpa HOM05D005212 ORTHO05D006353 4.1e-46 189.1 213 51.2
TWI60G0083 Tripterygium wilfordii HOM05D005212 ORTHO05D006353 9.2e-46 188.0 213 51.6
Nn3g18288 Nelumbo nucifera HOM05D005212 ORTHO05D006353 1.2e-45 187.6 213 52.1
GSVIVG01023834001 Vitis vinifera HOM05D005212 ORTHO05D006353 1.6e-45 187.2 213 53.1
HanXRQChr08g0212231 Helianthus annuus HOM05D005212 ORTHO05D006353 2.1e-45 186.8 213 50.7
PGR102G0858 Punica granatum HOM05D005212 ORTHO05D006353 4.6e-45 185.7 212 51.4
MD16G1023100 Malus domestica HOM05D005212 ORTHO05D006353 6.0e-45 185.3 213 51.2
TPR.G18569 Trifolium pratense HOM05D005212 ORTHO05D006353 6.0e-45 185.3 214 52.8
HanXRQChr12g0363921 Helianthus annuus HOM05D005212 ORTHO05D006353 7.8e-45 184.9 213 49.8
Lsat_1_v5_gn_4_8681 Lactuca sativa HOM05D005212 ORTHO05D006353 2.3e-44 183.3 209 52.2
Glyma.08G095400 Glycine max HOM05D005212 ORTHO05D006353 3.0e-44 183.0 213 50.2
Peaxi162Scf00723g00423 Petunia axillaris HOM05D005212 ORTHO05D006353 5.1e-44 182.2 221 49.8
Thhalv10014438m.g Eutrema salsugineum HOM05D005212 ORTHO05D006353 8.6e-44 181.4 258 48.8
Eucgr.H01942 Eucalyptus grandis HOM05D005212 ORTHO05D006353 1.9e-43 180.3 214 50.0
Duzib268G0887 Durio zibethinus HOM05D005212 ORTHO05D006353 2.5e-43 179.9 213 50.7
Manes.17G080300 Manihot esculenta HOM05D005212 ORTHO05D006353 2.5e-43 179.9 213 50.7
ECA233G1697 Erigeron canadensis HOM05D005212 ORTHO05D006353 4.3e-43 179.1 238 47.5
AT5G03830 Arabidopsis thaliana HOM05D005212 ORTHO05D006353 7.3e-43 178.3 222 53.6
CANSAT01G1481 Cannabis sativa HOM05D005212 ORTHO05D006353 1.6e-42 177.2 213 49.3
Gohir.D13G128200 Gossypium hirsutum HOM05D005212 ORTHO05D006353 2.1e-42 176.8 213 48.8
Gorai.013G143600 Gossypium raimondii HOM05D005212 ORTHO05D006353 2.1e-42 176.8 213 48.8
RcHm_v2.0_Chr4g0443611 Rosa chinensis HOM05D005212 ORTHO05D006353 3.6e-42 176.0 213 49.8
Gohir.D09G202000 Gossypium hirsutum HOM05D005212 ORTHO05D006353 8.1e-42 174.9 213 48.4
Sed0020748 Sechium edule HOM05D005212 ORTHO05D006353 8.1e-42 174.9 213 47.9
Gorai.006G225800 Gossypium raimondii HOM05D005212 ORTHO05D006353 1.1e-41 174.5 213 48.4
Gohir.A13G124600 Gossypium hirsutum HOM05D005212 ORTHO05D006353 1.4e-41 174.1 218 47.7
Gohir.A09G208525 Gossypium hirsutum HOM05D005212 ORTHO05D006353 4.0e-41 172.6 216 48.1
Phvul.005G028500 Phaseolus vulgaris HOM05D005212 ORTHO05D006353 4.0e-41 172.6 213 48.4
Duzib151G1103 Durio zibethinus HOM05D005212 ORTHO05D006353 5.2e-41 172.2 213 48.8
Sabra16G0312600 Salix brachista HOM05D005212 ORTHO05D006353 1.2e-40 171.0 240 46.7
RcHm_v2.0_Chr3g0448371 Rosa chinensis HOM05D005212 ORTHO05D006353 3.4e-40 169.5 213 47.9
FvH4_4g34100 Fragaria vesca HOM05D005212 ORTHO05D006353 1.3e-39 167.5 213 47.9
Ca_01441_v3 Cicer arietinum L. HOM05D005212 ORTHO05D006353 2.9e-39 166.4 183 52.5
CsaV3_5G028340 Cucumis sativus L. HOM05D005212 ORTHO05D006353 2.9e-39 166.4 214 46.3
Rhsim09G0094100 Rhododendron simsii HOM05D005212 ORTHO05D006353 2.9e-39 166.4 213 47.9
Cc04_g08850 Coffea canephora HOM05D005212 ORTHO05D006353 3.8e-39 166.0 186 52.2
QL03p033836 Quercus lobata HOM05D005212 ORTHO05D006353 1.1e-38 164.5 179 52.5
AUR62025478 Chenopodium quinoa HOM05D005212 ORTHO05D006353 1.9e-38 163.7 213 46.0
Os03g0853900 Oryza sativa ssp. japonica HOM05D005212 ORTHO05D006353 5.4e-38 162.2 229 43.2
GSVIVG01011709001 Vitis vinifera HOM05D005212 ORTHO05D006353 2.1e-37 160.2 223 47.1
Haze_10945 Corylus avellana HOM05D005212 ORTHO05D006353 3.5e-37 159.5 187 50.3
Ah.11g044490 Amaranthus hybridus HOM05D005212 ORTHO05D006353 6.0e-37 158.7 235 44.7
AUR62008760 Chenopodium quinoa HOM05D005212 ORTHO05D006353 7.8e-37 158.3 213 45.5
DCAR_014725 Daucus carota HOM05D005212 ORTHO05D006353 1.7e-36 157.1 214 45.3
Oeu014050.1 Olea europaea HOM05D005212 ORTHO05D006353 3.0e-36 156.4 213 46.5
Zm00001eb210590 Zea mays HOM05D005212 ORTHO05D006353 1.1e-35 154.5 233 41.6
Sed0012238 Sechium edule HOM05D005212 ORTHO05D006353 9.6e-35 151.4 183 47.0
Sc10g0005560 Simmondsia chinensis HOM05D005212 ORTHO05D006353 1.3e-34 151.0 182 46.2
HPP92_020815 Vanilla planifolia HOM05D005212 ORTHO05D006353 3.6e-34 149.4 207 43.0
PSO339G5759 Papaver somniferum HOM05D005212 ORTHO05D006353 1.4e-33 147.5 216 43.5
Lj3C867T4 Lonicera japonica HOM05D005212 ORTHO05D006353 1.8e-33 147.1 263 38.8
ClCG01G006340 Citrullus lanatus HOM05D005212 ORTHO05D006353 6.9e-33 145.2 232 41.4
Manes.15G130900 Manihot esculenta HOM05D005212 ORTHO05D006353 9.0e-33 144.8 184 47.8
PSO017G4317 Papaver somniferum HOM05D005212 ORTHO05D006353 1.2e-32 144.4 216 44.0
PSO478G2757 Papaver somniferum HOM05D005212 ORTHO05D006353 1.2e-32 144.4 216 43.1
SGA_v2.0_scaffold39G15210 Striga asiatica HOM05D005212 ORTHO05D006353 1.2e-32 144.4 216 42.1
FAN07G0183 Fragaria x ananassa HOM05D005212 ORTHO05D006353 1.5e-32 144.1 222 44.1
Hma1.2p1_0060F.1_g032750 Hydrangea macrophylla HOM05D005212 ORTHO05D006353 1.5e-32 144.1 214 44.4
ATR0829G227 Amborella trichopoda HOM05D005212 ORTHO05D006353 2.6e-32 143.3 217 43.8
FAN17G0532 Fragaria x ananassa HOM05D005212 ORTHO05D006353 2.6e-32 143.3 200 45.0
FAN22G0397 Fragaria x ananassa HOM05D005212 ORTHO05D006353 2.9e-31 139.8 200 43.5
MSTRG.13603 Avicennia marina HOM05D005212 ORTHO05D006353 3.8e-31 139.4 162 51.9
Oeu063592.1 Olea europaea HOM05D005212 ORTHO05D006353 4.9e-31 139.0 174 48.9
vmacro10659 Vaccinium macrocarpon HOM05D005212 ORTHO05D006353 1.4e-30 137.5 190 45.8
VMungo1080G0912 Vigna mungo HOM05D005212 ORTHO05D006353 2.4e-30 136.7 222 39.2
SalBow2G0696 Salvia bowleyana HOM05D005212 ORTHO05D006353 4.2e-30 136.0 182 45.1
AagrBONN_evm.TU.Sc2ySwM_344.3756 Anthoceros agrestis HOM05D005212 ORTHO05D006353 4.6e-29 132.5 234 39.3
CDE04G0882 Ceratophyllum demersum HOM05D005212 ORTHO05D006353 4.6e-29 132.5 166 48.8
AUR62014219 Chenopodium quinoa HOM05D005212 ORTHO05D006353 4.6e-29 132.5 233 40.3
PSO384G3589 Papaver somniferum HOM05D005212 ORTHO05D006353 1.3e-28 131.0 177 44.1
Mapoly0006s0099 Marchantia polymorpha HOM05D005212 ORTHO05D006353 2.5e-27 126.7 221 36.2
Dinv36246 Davidia involucrata HOM05D005212 ORTHO05D006353 3.3e-27 126.3 180 43.3
Cpa.g.sc1084.4 Carica papaya HOM05D005212 ORTHO05D006353 4.3e-27 125.9 130 53.8
unitig_22.g5595 Utricularia gibba HOM05D005212 ORTHO05D006353 5.6e-27 125.6 181 45.9
FAN12G1848 Fragaria x ananassa HOM05D005212 ORTHO05D006353 1.6e-26 124.0 168 46.4
SMO334G0102 Selaginella moellendorffii HOM05D005212 ORTHO05D006353 6.2e-26 122.1 236 35.2
MELO3C005296.2 Cucumis melo HOM05D005212 ORTHO05D006353 4.0e-25 119.4 213 37.1
AUR62018080 Chenopodium quinoa HOM05D005212 ORTHO05D006353 6.9e-25 118.6 208 37.5
COL.COLO4_35970 Corchorus olitorius HOM05D005212 ORTHO05D006353 6.9e-25 118.6 191 40.3
Pp3c25_10280 Physcomitrium patens HOM05D005212 ORTHO05D006353 2.2e-23 113.6 219 38.8
SEGI_04595 Sequoiadendron giganteum HOM05D005212 ORTHO05D006353 4.2e-22 109.4 166 41.6
Ca_09937_v3 Cicer arietinum L. HOM05D005212 ORTHO05D006353 7.9e-21 105.1 182 40.1
Ca_09949_v3 Cicer arietinum L. HOM05D005212 ORTHO05D006353 7.9e-21 105.1 182 40.1
Dinv28041 Davidia involucrata HOM05D005212 ORTHO05D006353 3.0e-20 103.2 134 50.0
Hund05206 Selenicereus undatus HOM05D005212 ORTHO05D006353 1.1e-17 94.7 159 39.6
AUR62014218 Chenopodium quinoa HOM05D005212 ORTHO05D006353 9.0e-17 91.7 213 33.8
CiPaw.06G048200 Carya illinoinensis HOM05D005212 ORTHO05D006353 2.5e-14 83.6 210 34.3
MCO05G230 Micromonas commoda HOM05D005212 ORTHO05D006353 2.7e-13 80.1 215 31.6
Hund24107 Selenicereus undatus HOM05D005212 ORTHO05D006353 2.5e-11 73.6 77 50.6
CBR_g30204 Chara braunii HOM05D000019 ORTHO05D000353 3.3e-11 73.2 114 35.1
AUR62014216 Chenopodium quinoa HOM05D005212 ORTHO05D006353 3.1e-09 66.6 146 35.6
Ca_15863_v3 Cicer arietinum L. HOM05D000681 ORTHO05D011778 1.1e-06 58.2 66 42.4
Peaxi162Scf00376g00010 Petunia axillaris HOM05D005212 ORTHO05D006353 1.9e-06 57.4 177 27.7


User provided reference genes

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