Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p29330 Brassica napus HOM05D005420 ORTHO05D006524 3.1e-159 565.1 287 100.0
BolC3t15280H Brassica oleracea HOM05D005420 ORTHO05D006524 3.1e-159 565.1 287 100.0
A03p24600 Brassica napus HOM05D005420 ORTHO05D006524 1.6e-147 526.2 287 94.4
BraA03t11665Z Brassica rapa HOM05D005420 ORTHO05D006524 2.7e-142 508.8 288 92.7
Thhalv10001571m.g Eutrema salsugineum HOM05D005420 ORTHO05D006524 7.5e-137 490.7 291 88.7
Sp4g26040 Schrenkiella parvula HOM05D005420 ORTHO05D006524 3.5e-134 481.9 278 91.7
CARHR139120 Cardamine hirsuta HOM05D005420 ORTHO05D006524 1.8e-130 469.5 296 85.8
Carub.0004s2651 Capsella rubella HOM05D005420 ORTHO05D006524 8.3e-128 460.7 290 86.2
BraA05t19397Z Brassica rapa HOM05D005420 ORTHO05D006524 1.1e-124 450.3 290 85.2
BcaC02g12350 Brassica carinata HOM05D005420 ORTHO05D006524 9.5e-124 447.2 289 84.8
C04p04880 Brassica napus HOM05D005420 ORTHO05D006524 9.5e-124 447.2 289 84.8
A05p04100 Brassica napus HOM05D005420 ORTHO05D006524 2.8e-123 445.7 291 84.9
AT2G43945 Arabidopsis thaliana HOM05D005420 ORTHO05D006524 8.9e-122 440.7 294 82.7
AL4G42820 Arabidopsis lyrata HOM05D005420 ORTHO05D006524 2.0e-121 439.5 297 82.5
BcaB06g29350 Brassica carinata HOM05D005420 ORTHO05D006524 1.7e-120 436.4 262 88.5
BolC4t22118H Brassica oleracea HOM05D005420 ORTHO05D006524 2.9e-120 435.6 288 83.3
Carub.0005s2660 Capsella rubella HOM05D005420 ORTHO05D006524 6.6e-117 424.5 297 79.1
Aa31LG10G14100 Aethionema arabicum HOM05D005420 ORTHO05D006524 9.2e-111 404.1 297 76.8
AT3G59870 Arabidopsis thaliana HOM05D005420 ORTHO05D006524 6.6e-109 397.9 296 74.7
THA.LOC104802345 Tarenaya hassleriana HOM05D005420 ORTHO05D006524 7.3e-108 394.4 299 72.9
Aa31LG1G25640 Aethionema arabicum HOM05D005420 ORTHO05D006524 1.2e-105 387.1 225 87.6
THA.LOC104804283 Tarenaya hassleriana HOM05D005420 ORTHO05D006524 1.2e-105 387.1 297 73.1
BcaB02g08884 Brassica carinata HOM05D005420 ORTHO05D006524 3.4e-105 385.6 292 75.3
Duzib177G0155 Durio zibethinus HOM05D005420 ORTHO05D006524 1.1e-100 370.5 288 71.9
Gohir.A02G106300 Gossypium hirsutum HOM05D005420 ORTHO05D006524 5.6e-100 368.2 288 71.2
Gorai.003G088300 Gossypium raimondii HOM05D005420 ORTHO05D006524 3.6e-99 365.5 288 69.8
Gohir.D03G071700 Gossypium hirsutum HOM05D005420 ORTHO05D006524 8.1e-99 364.4 288 69.8
FvH4_1g00160 Fragaria vesca HOM05D005420 ORTHO05D006524 1.4e-98 363.6 288 71.2
FAN28G0609 Fragaria x ananassa HOM05D005420 ORTHO05D006524 1.4e-98 363.6 288 71.2
Cpa.g.sc151.6 Carica papaya HOM05D005420 ORTHO05D006524 5.3e-98 361.7 207 87.9
FAN26G3138 Fragaria x ananassa HOM05D005420 ORTHO05D006524 6.9e-98 361.3 288 70.8
Thecc.05G186000 Theobroma cacao HOM05D005420 ORTHO05D006524 9.0e-98 360.9 291 70.1
Potri.013G084300 Populus trichocarpa HOM05D005420 ORTHO05D006524 3.4e-97 359.0 230 79.6
QL10p064332 Quercus lobata HOM05D005420 ORTHO05D006524 3.4e-97 359.0 297 68.4
EL10Ac3g06165 Beta vulgaris HOM05D005420 ORTHO05D006524 1.7e-96 356.7 293 70.0
FAN23G1410 Fragaria x ananassa HOM05D005420 ORTHO05D006524 3.8e-96 355.5 288 70.5
Cc03_g15990 Coffea canephora HOM05D005420 ORTHO05D006524 1.1e-95 354.0 293 68.9
Prupe.7G269700 Prunus persica HOM05D005420 ORTHO05D006524 1.1e-95 354.0 284 71.1
Sabra13G0078900 Salix brachista HOM05D005420 ORTHO05D006524 1.4e-95 353.6 260 72.3
CiPaw.02G124600 Carya illinoinensis HOM05D005420 ORTHO05D006524 1.9e-95 353.2 288 69.4
RcHm_v2.0_Chr2g0084451 Rosa chinensis HOM05D005420 ORTHO05D006524 5.4e-95 351.7 290 68.3
Ah.07g203200 Amaranthus hybridus HOM05D005420 ORTHO05D006524 1.2e-94 350.5 291 69.1
Manes.12G003300 Manihot esculenta HOM05D005420 ORTHO05D006524 1.6e-94 350.1 267 71.2
Ciclev10012405m.g Citrus clementina HOM05D005420 ORTHO05D006524 2.7e-94 349.4 295 67.8
MD00G1087500 Malus domestica HOM05D005420 ORTHO05D006524 1.0e-93 347.4 289 68.9
AUR62002482 Chenopodium quinoa HOM05D005420 ORTHO05D006524 1.3e-93 347.1 210 85.2
Atru.chr12.1712 Acer truncatum HOM05D005420 ORTHO05D006524 1.7e-93 346.7 310 64.5
TAR636G0539 Trochodendron aralioides HOM05D005420 ORTHO05D006524 2.3e-93 346.3 290 66.9
Cfa008513 Carpinus fangiana HOM05D005420 ORTHO05D006524 3.9e-93 345.5 207 83.6
AUR62023710 Chenopodium quinoa HOM05D005420 ORTHO05D006524 5.1e-93 345.1 210 84.8
Peaxi162Scf01205g00032 Petunia axillaris HOM05D005420 ORTHO05D006524 6.6e-93 344.7 256 72.7
TWI36G0345 Tripterygium wilfordii HOM05D005420 ORTHO05D006524 6.6e-93 344.7 205 83.9
PGR119G0486 Punica granatum HOM05D005420 ORTHO05D006524 8.7e-93 344.4 192 89.1
MD15G1143300 Malus domestica HOM05D005420 ORTHO05D006524 1.9e-92 343.2 298 66.1
TAR365G1242 Trochodendron aralioides HOM05D005420 ORTHO05D006524 1.9e-92 343.2 293 66.6
CSS0022736 Camellia sinensis var. sinensis HOM05D005420 ORTHO05D006524 2.5e-92 342.8 204 85.3
HanXRQChr11g0343501 Helianthus annuus HOM05D005420 ORTHO05D006524 2.5e-92 342.8 202 85.1
Nitab4.5_0008205g0010 Nicotiana tabacum HOM05D005420 ORTHO05D006524 2.5e-92 342.8 279 68.5
Dinv33245 Davidia involucrata HOM05D005420 ORTHO05D006524 3.3e-92 342.4 209 83.7
CSS0017727 Camellia sinensis var. sinensis HOM05D005420 ORTHO05D006524 5.6e-92 341.7 204 84.8
VMungo1215G3385 Vigna mungo HOM05D005420 ORTHO05D006524 7.3e-92 341.3 192 89.1
CiPaw.01G201600 Carya illinoinensis HOM05D005420 ORTHO05D006524 9.6e-92 340.9 205 82.9
CsaV3_7G022350 Cucumis sativus L. HOM05D005420 ORTHO05D006524 9.6e-92 340.9 195 87.7
MSTRG.24552 Avicennia marina HOM05D005420 ORTHO05D006524 1.3e-91 340.5 201 85.1
ClCG09G014850 Citrullus lanatus HOM05D005420 ORTHO05D006524 1.6e-91 340.1 290 67.6
Duzib128G1088 Durio zibethinus HOM05D005420 ORTHO05D006524 1.6e-91 340.1 196 87.2
Glyma.07G273700 Glycine max HOM05D005420 ORTHO05D006524 2.8e-91 339.3 192 88.0
Nitab4.5_0000013g0040 Nicotiana tabacum HOM05D005420 ORTHO05D006524 3.6e-91 339.0 286 67.8
TWI36G1305 Tripterygium wilfordii HOM05D005420 ORTHO05D006524 3.6e-91 339.0 276 68.1
Eucgr.H01455 Eucalyptus grandis HOM05D005420 ORTHO05D006524 6.2e-91 338.2 292 67.5
Glyma.17G000800 Glycine max HOM05D005420 ORTHO05D006524 6.2e-91 338.2 192 87.5
PSO732G0217 Papaver somniferum HOM05D005420 ORTHO05D006524 6.2e-91 338.2 283 66.8
GSVIVG01038249001 Vitis vinifera HOM05D005420 ORTHO05D006524 6.2e-91 338.2 205 82.9
CANSAT56G1087 Cannabis sativa HOM05D005420 ORTHO05D006524 8.1e-91 337.8 300 64.7
arahy.Tifrunner.gnm1.ann1.D6NWCJ Arachis hypogaea HOM05D005420 ORTHO05D006524 1.1e-90 337.4 192 88.0
arahy.Tifrunner.gnm1.ann1.EMGW5K Arachis hypogaea HOM05D005420 ORTHO05D006524 1.1e-90 337.4 192 88.0
SalBow3G4646 Salvia bowleyana HOM05D005420 ORTHO05D006524 1.1e-90 337.4 194 87.1
Solyc08g015620.3 Solanum lycopersicum HOM05D005420 ORTHO05D006524 1.1e-90 337.4 294 67.3
Sopen08g005610 Solanum pennellii HOM05D005420 ORTHO05D006524 1.1e-90 337.4 294 67.3
HanXRQChr01g0023651 Helianthus annuus HOM05D005420 ORTHO05D006524 2.4e-90 336.3 263 71.5
ECA248G1232 Erigeron canadensis HOM05D005420 ORTHO05D006524 4.0e-90 335.5 218 78.9
PSO675G2924 Papaver somniferum HOM05D005420 ORTHO05D006524 6.9e-90 334.7 285 66.3
Lj6C285T2 Lonicera japonica HOM05D005420 ORTHO05D006524 1.2e-89 334.0 195 86.2
Migut.G00921 Erythranthe guttata HOM05D005420 ORTHO05D006524 1.5e-89 333.6 279 67.0
Sed0010932 Sechium edule HOM05D005420 ORTHO05D006524 1.5e-89 333.6 287 65.9
Lj4g0016379 Lotus japonicus HOM05D005420 ORTHO05D006524 3.4e-89 332.4 258 70.2
MBI07_g10354_MAGBIO Magnolia biondii HOM05D005420 ORTHO05D006524 4.5e-89 332.0 284 63.7
HPP92_024700 Vanilla planifolia HOM05D005420 ORTHO05D006524 4.5e-89 332.0 197 83.2
Rhsim09G0003700 Rhododendron simsii HOM05D005420 ORTHO05D006524 5.8e-89 331.6 220 79.1
Aqoxy1G01859 Aquilegia oxysepala HOM05D005420 ORTHO05D006524 1.3e-88 330.5 193 86.5
Lsat_1_v5_gn_1_76981 Lactuca sativa HOM05D005420 ORTHO05D006524 2.9e-88 329.3 210 80.0
unitig_699.g19464 Utricularia gibba HOM05D005420 ORTHO05D006524 3.8e-88 328.9 192 84.9
unitig_27.g25143 Utricularia gibba HOM05D005420 ORTHO05D006524 8.4e-88 327.8 192 84.9
DCAR_005460 Daucus carota HOM05D005420 ORTHO05D006524 1.1e-87 327.4 259 70.3
CDE09G0694 Ceratophyllum demersum HOM05D005420 ORTHO05D006524 1.4e-87 327.0 282 63.8
GSVIVG01026140001 Vitis vinifera HOM05D005420 ORTHO05D006524 1.9e-87 326.6 207 79.2
SGA_v2.0_scaffold12G06218 Striga asiatica HOM05D005420 ORTHO05D006524 2.4e-87 326.2 257 69.6
ATR0743G098 Amborella trichopoda HOM05D005420 ORTHO05D006524 3.2e-87 325.9 289 64.0
Phvul.003G074600 Phaseolus vulgaris HOM05D005420 ORTHO05D006524 9.3e-87 324.3 298 64.8
vmacro00721 Vaccinium macrocarpon HOM05D005420 ORTHO05D006524 1.2e-86 323.9 223 77.1
Actinidia34566 Actinidia chinensis HOM05D005420 ORTHO05D006524 2.1e-86 323.2 209 79.4
Os01g0338600 Oryza sativa ssp. japonica HOM05D005420 ORTHO05D006524 6.0e-86 321.6 212 77.4
Psat4g001320 Pisum sativum HOM05D005420 ORTHO05D006524 6.0e-86 321.6 258 70.2
Actinidia18399 Actinidia chinensis HOM05D005420 ORTHO05D006524 7.9e-86 321.2 223 74.9
Zm00001eb159810 Zea mays HOM05D005420 ORTHO05D006524 7.9e-86 321.2 190 83.7
Pp3c8_21410 Physcomitrium patens HOM05D005420 ORTHO05D006524 4.0e-82 308.9 281 60.1
SMO367G0538 Selaginella moellendorffii HOM05D005420 ORTHO05D006524 3.4e-81 305.8 187 82.4
Mapoly0136s0029 Marchantia polymorpha HOM05D005420 ORTHO05D006524 5.8e-81 305.1 187 82.4
Pp3c24_16460 Physcomitrium patens HOM05D005420 ORTHO05D006524 1.1e-79 300.8 184 81.5
SEGI_26827 Sequoiadendron giganteum HOM05D005420 ORTHO05D006524 1.0e-77 294.3 297 60.9
Haze_11131 Corylus avellana HOM05D005420 ORTHO05D006524 9.6e-76 287.7 343 50.1
Migut.N03031 Erythranthe guttata HOM05D005420 ORTHO05D006524 4.0e-74 282.3 195 75.4
Manes.13G003200 Manihot esculenta HOM05D005420 ORTHO05D006524 5.3e-74 282.0 157 89.2
TPR.G6015 Trifolium pratense HOM05D005420 ORTHO05D006524 3.8e-72 275.8 248 65.3
Hund22588 Selenicereus undatus HOM05D005420 ORTHO05D006524 3.5e-70 269.2 218 70.2
Nn7g37463 Nelumbo nucifera HOM05D005420 ORTHO05D006524 7.9e-70 268.1 229 65.1
Dinv24753 Davidia involucrata HOM05D005420 ORTHO05D006524 6.7e-69 265.0 245 63.7
Sc25g0003040 Simmondsia chinensis HOM05D005420 ORTHO05D006524 1.3e-67 260.8 225 66.2
Nn3g18334 Nelumbo nucifera HOM05D005420 ORTHO05D006524 3.8e-64 249.2 250 60.4
MCO05G102 Micromonas commoda HOM05D005420 ORTHO05D006524 5.0e-64 248.8 160 75.0
Lalb_Chr18g0044961 Lupinus albus HOM05D005420 ORTHO05D006524 6.5e-64 248.4 134 92.5
Medtr4g134910 Medicago truncatula HOM05D005420 ORTHO05D006524 8.5e-64 248.1 151 83.4
Cre16.g676450 Chlamydomonas reinhardtii HOM05D005420 ORTHO05D006524 1.0e-61 241.1 193 62.7
PRCOL_00006877 Prasinoderma coloniale HOM05D005420 ORTHO05D006524 1.7e-59 233.8 160 69.4
Atru.chr12.1711 Acer truncatum HOM05D005420 ORTHO05D006524 6.3e-59 231.9 191 69.1
Zm00001eb356860 Zea mays HOM05D005420 ORTHO05D006524 7.7e-57 224.9 190 64.2
Oeu022910.1 Olea europaea HOM05D005420 ORTHO05D006524 1.8e-53 213.8 128 85.9
Ca_13540_v3 Cicer arietinum L. HOM05D005420 ORTHO05D006524 3.2e-47 193.0 168 66.1
AagrBONN_evm.TU.Sc2ySwM_228.1821 Anthoceros agrestis HOM05D005420 ORTHO05D006524 1.1e-44 184.5 120 76.7
Sed0016168 Sechium edule HOM05D005420 ORTHO05D006524 4.2e-39 166.0 90 93.3
MBI07_g42072_MAGBIO Magnolia biondii HOM05D005420 ORTHO05D006524 6.1e-38 162.2 89 89.9
CDE02G3676 Ceratophyllum demersum HOM05D005420 ORTHO05D006524 2.9e-32 143.3 166 51.2
Pp3c20_1670 Physcomitrium patens HOM05D005420 ORTHO05D006524 7.2e-31 138.7 160 48.1
Eucgr.L00810 Eucalyptus grandis HOM05D005420 ORTHO05D006524 1.2e-25 121.3 177 48.6
Eucgr.H01440 Eucalyptus grandis HOM05D005420 ORTHO05D006524 3.8e-24 116.3 79 72.2
Lsat_1_v5_gn_1_75001 Lactuca sativa HOM05D005420 ORTHO05D006524 8.6e-24 115.2 78 70.5
Lsat_1_v5_gn_5_160100 Lactuca sativa HOM05D005420 ORTHO05D006524 2.1e-22 110.5 78 67.9
MSTRG.9265 Avicennia marina HOM05D005420 ORTHO05D006524 1.6e-17 94.4 77 66.2
CBR_g10867 Chara braunii HOM05D005420 ORTHO05D006524 6.6e-16 89.0 150 38.7
Lalb_Chr18g0044971 Lupinus albus HOM05D005420 ORTHO05D006524 1.2e-06 58.2 43 58.1
BcaB06g29509 Brassica carinata HOM05D004821 ORTHO05D005711 2.1e-06 57.4 33 69.7
BcaC02g07141 Brassica carinata HOM05D004821 ORTHO05D005711 2.1e-06 57.4 33 69.7
Sed0003231 Sechium edule HOM05D005420 ORTHO05D006524 8.0e-06 55.5 124 31.5


User provided reference genes

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