Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p29320 Brassica napus HOM05D004249 ORTHO05D005015 7.5e-74 280.4 139 100.0
BolC3t15278H Brassica oleracea HOM05D004249 ORTHO05D005015 5.9e-63 244.2 131 93.1
A04p33130 Brassica napus HOM05D004249 ORTHO05D005015 8.1e-28 127.5 149 50.3
BraA04t18772Z Brassica rapa HOM05D004249 ORTHO05D005015 1.8e-27 126.3 149 50.3
BcaB06g29508 Brassica carinata HOM05D004249 ORTHO05D005015 2.3e-27 125.9 149 49.0
BcaC02g07142 Brassica carinata HOM05D004249 ORTHO05D005015 2.3e-27 125.9 149 49.0
BolC4t28585H Brassica oleracea HOM05D004249 ORTHO05D005015 2.3e-27 125.9 149 49.0
Thhalv10001619m.g Eutrema salsugineum HOM05D004249 ORTHO05D005015 5.2e-27 124.8 148 50.0
C04p70830 Brassica napus HOM05D004249 ORTHO05D005015 2.6e-26 122.5 149 47.7
AL4G42810 Arabidopsis lyrata HOM05D004249 ORTHO05D005015 2.4e-24 115.9 148 47.3
Aa31LG1G25630 Aethionema arabicum HOM05D004249 ORTHO05D005015 2.1e-23 112.8 148 45.3
Sp4g26020 Schrenkiella parvula HOM05D004249 ORTHO05D005015 6.6e-22 107.8 150 42.7
THA.LOC104802342 Tarenaya hassleriana HOM05D004249 ORTHO05D005015 1.6e-20 103.2 148 40.5
THA.LOC104804276 Tarenaya hassleriana HOM05D004249 ORTHO05D005015 3.6e-20 102.1 148 39.9
BcaB06g29349 Brassica carinata HOM05D004249 ORTHO05D005015 2.4e-19 99.4 132 46.2
Sp4g26030 Schrenkiella parvula HOM05D004249 ORTHO05D005015 2.4e-19 99.4 58 81.0
Eucgr.A00430 Eucalyptus grandis HOM05D004249 ORTHO05D005015 3.1e-19 99.0 154 39.6
Gorai.006G186800 Gossypium raimondii HOM05D004249 ORTHO05D005015 5.2e-19 98.2 148 36.5
C09p12990 Brassica napus HOM05D004249 ORTHO05D024151 6.8e-19 97.8 107 57.0
BolC8t49376H Brassica oleracea HOM05D004249 ORTHO05D005015 6.8e-19 97.8 107 57.0
C02p63480 Brassica napus HOM05D004249 ORTHO05D005015 8.9e-19 97.4 107 57.0
Potri.017G007000 Populus trichocarpa HOM05D004249 ORTHO05D005015 8.9e-19 97.4 154 35.7
BcaB02g08886 Brassica carinata HOM05D004249 ORTHO05D005015 1.2e-18 97.1 151 41.7
BolC7t41877H Brassica oleracea HOM05D004249 ORTHO05D005015 1.2e-18 97.1 112 53.6
CARHR139110 Cardamine hirsuta HOM05D004249 ORTHO05D005015 1.2e-18 97.1 57 78.9
AT2G43940 Arabidopsis thaliana HOM05D004249 ORTHO05D005015 2.0e-18 96.3 57 78.9
BcaC02g12352 Brassica carinata HOM05D004249 ORTHO05D005015 2.0e-18 96.3 151 40.4
C04p04870 Brassica napus HOM05D004249 ORTHO05D005015 2.0e-18 96.3 151 40.4
BolC4t22117H Brassica oleracea HOM05D004249 ORTHO05D005015 2.0e-18 96.3 151 40.4
Carub.0004s2650 Capsella rubella HOM05D004249 ORTHO05D005015 3.4e-18 95.5 57 78.9
Thhalv10001708m.g Eutrema salsugineum HOM05D004249 ORTHO05D005015 3.4e-18 95.5 62 71.0
Manes.01G010300 Manihot esculenta HOM05D004249 ORTHO05D005015 9.9e-18 94.0 153 35.3
Duzib093G0712 Durio zibethinus HOM05D004249 ORTHO05D005015 1.3e-17 93.6 148 35.1
CiPaw.01G201200 Carya illinoinensis HOM05D004249 ORTHO05D005015 1.7e-17 93.2 118 42.4
GSVIVG01038246001 Vitis vinifera HOM05D004249 ORTHO05D005015 1.7e-17 93.2 154 33.8
Thecc.05G001900 Theobroma cacao HOM05D004249 ORTHO05D005015 2.2e-17 92.8 148 35.1
PGR042G1833 Punica granatum HOM05D004249 ORTHO05D005015 4.9e-17 91.7 153 35.9
Sed0024580 Sechium edule HOM05D004249 ORTHO05D005015 6.4e-17 91.3 148 37.2
QL10p064195 Quercus lobata HOM05D004249 ORTHO05D005015 8.4e-17 90.9 147 34.7
unitig_0.g2413 Utricularia gibba HOM05D004249 ORTHO05D005015 8.4e-17 90.9 154 37.0
EL10Ac3g06161 Beta vulgaris HOM05D004249 ORTHO05D005015 1.1e-16 90.5 96 45.8
CSS0044272 Camellia sinensis var. sinensis HOM05D004249 ORTHO05D005015 1.4e-16 90.1 154 35.1
Cfa008510 Carpinus fangiana HOM05D004249 ORTHO05D005015 1.9e-16 89.7 153 34.6
Haze_11140 Corylus avellana HOM05D004249 ORTHO05D005015 1.9e-16 89.7 153 34.6
Haze_11142 Corylus avellana HOM05D004249 ORTHO05D005015 1.9e-16 89.7 153 34.6
FvH4_1g00240 Fragaria vesca HOM05D004249 ORTHO05D005015 1.9e-16 89.7 153 37.3
A05p04090 Brassica napus HOM05D004249 ORTHO05D005015 2.4e-16 89.4 151 39.1
BraA05t19396Z Brassica rapa HOM05D004249 ORTHO05D005015 2.4e-16 89.4 151 39.1
FAN26G1858 Fragaria x ananassa HOM05D004249 ORTHO05D005015 2.4e-16 89.4 153 37.9
GSVIVG01038247001 Vitis vinifera HOM05D004249 ORTHO05D005015 2.4e-16 89.4 148 33.1
Atru.chr3.2004 Acer truncatum HOM05D004249 ORTHO05D005015 3.2e-16 89.0 154 35.7
FAN28G1175 Fragaria x ananassa HOM05D004249 ORTHO05D005015 5.4e-16 88.2 153 36.6
Cpa.g.sc151.2 Carica papaya HOM05D004249 ORTHO05D005015 7.1e-16 87.8 147 34.0
Ciclev10024361m.g Citrus clementina HOM05D004249 ORTHO05D005015 7.1e-16 87.8 154 35.1
CsaV3_4G029860 Cucumis sativus L. HOM05D004249 ORTHO05D005015 7.1e-16 87.8 149 38.9
Cpa.g.sc151.4 Carica papaya HOM05D004249 ORTHO05D005015 9.3e-16 87.4 148 34.5
Cc03_g16020 Coffea canephora HOM05D004249 ORTHO05D005015 9.3e-16 87.4 148 36.5
AUR62002468 Chenopodium quinoa HOM05D004249 ORTHO05D005015 1.2e-15 87.0 170 34.7
MBI10_g45897_MAGBIO Magnolia biondii HOM05D004249 ORTHO05D005015 1.2e-15 87.0 149 35.6
SGA_v2.0_scaffold37G14917 Striga asiatica HOM05D004249 ORTHO05D005015 1.6e-15 86.7 101 41.6
Cpa.g.sc151.3 Carica papaya HOM05D004249 ORTHO05D005015 2.1e-15 86.3 148 35.1
CDE07G0873 Ceratophyllum demersum HOM05D004249 ORTHO05D005015 2.1e-15 86.3 148 34.5
PSO541G0314 Papaver somniferum HOM05D004249 ORTHO05D005015 2.7e-15 85.9 150 36.0
Hma1.2p1_0872F.1_g231130 Hydrangea macrophylla HOM05D004249 ORTHO05D005015 3.5e-15 85.5 148 33.1
THA.LOC104804252 Tarenaya hassleriana HOM05D004249 ORTHO05D005015 4.6e-15 85.1 148 39.2
BcaB06g29506 Brassica carinata HOM05D004249 ORTHO05D005015 6.0e-15 84.7 148 35.1
Carub.0004s2647 Capsella rubella HOM05D004249 ORTHO05D005015 6.0e-15 84.7 148 34.5
Prupe.7G269600 Prunus persica HOM05D004249 ORTHO05D005015 6.0e-15 84.7 148 34.5
RcHm_v2.0_Chr2g0084541 Rosa chinensis HOM05D004249 ORTHO05D005015 6.0e-15 84.7 153 35.3
MD15G1143500 Malus domestica HOM05D004249 ORTHO05D005015 7.8e-15 84.3 153 34.6
CAN.G607.4 Capsicum annuum HOM05D004249 ORTHO05D005015 1.0e-14 84.0 154 31.8
Sp4g26010 Schrenkiella parvula HOM05D004249 ORTHO05D005015 1.0e-14 84.0 148 34.5
Aa31LG1G25620 Aethionema arabicum HOM05D004249 ORTHO05D005015 1.3e-14 83.6 148 33.8
AUR62002469 Chenopodium quinoa HOM05D004249 ORTHO05D005015 1.3e-14 83.6 148 34.5
Gohir.D09G165000 Gossypium hirsutum HOM05D004249 ORTHO05D005015 1.3e-14 83.6 99 44.4
PSO541G3414 Papaver somniferum HOM05D004249 ORTHO05D005015 1.3e-14 83.6 129 38.0
Sabra17G0007900 Salix brachista HOM05D001637 ORTHO05D002178 1.3e-14 83.6 138 36.2
BcaC02g12353 Brassica carinata HOM05D004249 ORTHO05D005015 1.7e-14 83.2 148 33.1
C04p04840 Brassica napus HOM05D004249 ORTHO05D005015 1.7e-14 83.2 148 33.1
BcaC02g07143 Brassica carinata HOM05D004249 ORTHO05D005015 2.3e-14 82.8 148 33.8
C04p70820 Brassica napus HOM05D004249 ORTHO05D005015 2.3e-14 82.8 148 33.8
PSO675G8665 Papaver somniferum HOM05D004249 ORTHO05D005015 2.3e-14 82.8 148 35.1
Carub.0004s2648 Capsella rubella HOM05D004249 ORTHO05D005015 3.0e-14 82.4 148 34.5
Sp4g26000 Schrenkiella parvula HOM05D004249 ORTHO05D005015 3.0e-14 82.4 148 33.1
PSO675G5594 Papaver somniferum HOM05D004249 ORTHO05D005015 3.9e-14 82.0 148 37.2
Solyc08g014600.4 Solanum lycopersicum HOM05D004249 ORTHO05D005015 3.9e-14 82.0 154 31.8
Actinidia34567 Actinidia chinensis HOM05D004249 ORTHO05D005015 5.1e-14 81.6 148 32.4
PGSC0003DMG400025227 Solanum tuberosum HOM05D004249 ORTHO05D005015 5.1e-14 81.6 154 32.5
Migut.G00862 Erythranthe guttata HOM05D004249 ORTHO05D005015 6.6e-14 81.3 153 33.3
Sopen08g005580 Solanum pennellii HOM05D004249 ORTHO05D005015 6.6e-14 81.3 154 31.8
A05p04060 Brassica napus HOM05D004249 ORTHO05D005015 8.7e-14 80.9 148 32.4
Peaxi162Scf01205g00038 Petunia axillaris HOM05D004249 ORTHO05D005015 8.7e-14 80.9 154 32.5
COL.COLO4_14412 Corchorus olitorius HOM05D001637 ORTHO05D002178 1.1e-13 80.5 86 46.5
THA.LOC104824126 Tarenaya hassleriana HOM05D004249 ORTHO05D005015 1.1e-13 80.5 56 66.1
CARHR139100 Cardamine hirsuta HOM05D004249 ORTHO05D005015 1.5e-13 80.1 148 34.5
AT2G43920 Arabidopsis thaliana HOM05D004249 ORTHO05D005015 1.9e-13 79.7 148 33.1
MSTRG.9267 Avicennia marina HOM05D004249 ORTHO05D005015 1.9e-13 79.7 148 32.4
Aqoxy5G00067 Aquilegia oxysepala HOM05D004249 ORTHO05D005015 2.5e-13 79.3 148 34.5
PSO541G6333 Papaver somniferum HOM05D004249 ORTHO05D005015 3.3e-13 79.0 149 33.6
PSO675G1470 Papaver somniferum HOM05D004249 ORTHO05D005015 3.3e-13 79.0 149 38.3
AL4G42780 Arabidopsis lyrata HOM05D004249 ORTHO05D005015 4.3e-13 78.6 148 32.4
AT2G43910 Arabidopsis thaliana HOM05D004249 ORTHO05D005015 7.3e-13 77.8 148 31.8
Thhalv10001612m.g Eutrema salsugineum HOM05D004249 ORTHO05D005015 1.3e-12 77.0 148 32.4
PSO675G2456 Papaver somniferum HOM05D004249 ORTHO05D005015 1.3e-12 77.0 149 32.9
SalBow3G0617 Salvia bowleyana HOM05D004249 ORTHO05D005015 1.3e-12 77.0 57 56.1
TWI15G0032 Tripterygium wilfordii HOM05D004249 ORTHO05D005015 1.6e-12 76.6 63 54.0
Os06g0153900 Oryza sativa ssp. japonica HOM05D004249 ORTHO05D005015 2.1e-12 76.3 148 31.1
PSO541G3219 Papaver somniferum HOM05D004249 ORTHO05D005015 2.1e-12 76.3 149 33.6
ATR0743G017 Amborella trichopoda HOM05D004249 ORTHO05D005015 2.8e-12 75.9 154 33.1
C08p17510 Brassica napus HOM05D004249 ORTHO05D005015 2.8e-12 75.9 47 76.6
SEGI_12768 Sequoiadendron giganteum HOM05D004249 ORTHO05D005015 2.8e-12 75.9 149 32.2
TAR633G0865 Trochodendron aralioides HOM05D004249 ORTHO05D005015 2.8e-12 75.9 138 34.8
AUR62023721 Chenopodium quinoa HOM05D004249 ORTHO05D005015 6.2e-12 74.7 139 33.8
PSO675G2958 Papaver somniferum HOM05D004249 ORTHO05D005015 6.2e-12 74.7 150 35.3
QL10p064299 Quercus lobata HOM05D000004 ORTHO05D000002 6.2e-12 74.7 143 31.5
Mapoly0115s0024 Marchantia polymorpha HOM05D004249 ORTHO05D005015 9.0e-11 70.9 148 32.4
Dinv24754 Davidia involucrata HOM05D004249 ORTHO05D005015 1.2e-10 70.5 140 33.6
vmacro05005 Vaccinium macrocarpon HOM05D004249 ORTHO05D005015 1.5e-10 70.1 159 29.6
C08p48990 Brassica napus HOM05D004249 ORTHO05D005015 2.0e-10 69.7 47 72.3
DCAR_027496 Daucus carota HOM05D004249 ORTHO05D005015 2.6e-10 69.3 138 32.6
BcaB02g08891 Brassica carinata HOM05D004249 ORTHO05D005015 3.4e-10 68.9 153 30.7
BolC4t28584H Brassica oleracea HOM05D004249 ORTHO05D005015 9.9e-10 67.4 138 31.9
Nn1g09449 Nelumbo nucifera HOM05D004249 ORTHO05D005015 9.9e-10 67.4 144 31.2
SGA_v2.0_scaffold37G14935 Striga asiatica HOM05D004249 ORTHO05D005015 9.9e-10 67.4 137 32.8
CSS0037089 Camellia sinensis var. sinensis HOM05D004249 ORTHO05D005015 1.3e-09 67.0 153 30.7
Oeu064015.2 Olea europaea HOM05D004249 ORTHO05D005015 1.3e-09 67.0 138 31.9
SMO144G0018 Selaginella moellendorffii HOM05D004249 ORTHO05D005015 2.2e-09 66.2 149 30.9
A04p33120 Brassica napus HOM05D004249 ORTHO05D005015 3.8e-09 65.5 138 31.2
BraA04t18771Z Brassica rapa HOM05D004249 ORTHO05D005015 3.8e-09 65.5 138 31.2
EL10Ac3g06159 Beta vulgaris HOM05D004249 ORTHO05D005015 4.9e-09 65.1 147 32.7
FAN23G1087 Fragaria x ananassa HOM05D004249 ORTHO05D005015 4.9e-09 65.1 47 63.8
BcaB06g29507 Brassica carinata HOM05D004249 ORTHO05D005015 8.4e-09 64.3 137 30.7
HPP92_011579 Vanilla planifolia HOM05D004249 ORTHO05D005015 1.1e-08 63.9 57 50.9
BcaB02g08894 Brassica carinata HOM05D004249 ORTHO05D005015 4.2e-08 62.0 149 29.5
BraA05t19394Z Brassica rapa HOM05D004249 ORTHO05D005015 5.4e-08 61.6 138 29.0
AagrBONN_evm.TU.Sc2ySwM_117.2259 Anthoceros agrestis HOM05D004249 ORTHO05D005015 7.1e-08 61.2 152 30.3
Lj6A284T20 Lonicera japonica HOM05D004249 ORTHO05D005015 9.3e-08 60.8 47 57.4
Thhalv10019674m.g Eutrema salsugineum HOM05D004249 ORTHO05D005015 1.2e-07 60.5 160 29.4
QL10p064222 Quercus lobata HOM05D000009 ORTHO05D000116 1.2e-07 60.5 145 28.3
Hund12312 Selenicereus undatus HOM05D004249 ORTHO05D005015 1.6e-07 60.1 147 29.3
BcaB02g08889 Brassica carinata HOM05D004249 ORTHO05D005015 4.6e-07 58.5 57 47.4
PSO541G5503 Papaver somniferum HOM05D004249 ORTHO05D005015 6.0e-07 58.2 138 31.9
Os03g0843800 Oryza sativa ssp. japonica HOM05D004249 ORTHO05D005015 1.3e-06 57.0 57 45.6
FAN23G1236 Fragaria x ananassa HOM05D004249 ORTHO05D005015 3.0e-06 55.8 41 61.0


User provided reference genes

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