Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p27930 Brassica napus HOM05D007137 ORTHO05D008982 2.0e-132 475.7 231 100.0
BolC3t15165H Brassica oleracea HOM05D007137 ORTHO05D008982 9.3e-130 466.8 243 95.1
BraA03t11558Z Brassica rapa HOM05D007137 ORTHO05D008982 8.2e-126 453.8 237 94.1
A03p23410 Brassica napus HOM05D007137 ORTHO05D008982 6.9e-125 450.7 237 93.2
Thhalv10017217m.g Eutrema salsugineum HOM05D007137 ORTHO05D008982 7.9e-113 410.6 229 86.9
CARHR136840 Cardamine hirsuta HOM05D007137 ORTHO05D008982 3.9e-112 408.3 227 86.3
AL4G40070 Arabidopsis lyrata HOM05D007137 ORTHO05D008982 1.3e-110 403.3 227 85.5
AT2G41760 Arabidopsis thaliana HOM05D007137 ORTHO05D008982 1.3e-110 403.3 229 85.6
Carub.0004s2404 Capsella rubella HOM05D007137 ORTHO05D008982 8.2e-110 400.6 229 83.8
Sp4g24030 Schrenkiella parvula HOM05D007137 ORTHO05D008982 1.1e-106 390.2 231 83.1
THA.LOC104818226 Tarenaya hassleriana HOM05D007137 ORTHO05D008982 4.2e-98 361.7 223 76.2
Actinidia09328 Actinidia chinensis HOM05D007137 ORTHO05D008982 2.5e-82 309.3 227 63.4
Cfa016812 Carpinus fangiana HOM05D007137 ORTHO05D008982 2.8e-81 305.8 224 59.8
Ciclev10005859m.g Citrus clementina HOM05D007137 ORTHO05D008982 8.0e-81 304.3 219 63.5
Gohir.A09G122000 Gossypium hirsutum HOM05D007137 ORTHO05D008982 3.0e-80 302.4 224 62.1
Gohir.D09G118100 Gossypium hirsutum HOM05D007137 ORTHO05D008982 1.5e-79 300.1 220 62.7
Gorai.006G136400 Gossypium raimondii HOM05D007137 ORTHO05D008982 1.5e-79 300.1 220 62.7
TAR369G0818 Trochodendron aralioides HOM05D007137 ORTHO05D008982 5.7e-79 298.1 221 62.0
vmacro07849 Vaccinium macrocarpon HOM05D007137 ORTHO05D008982 5.7e-79 298.1 221 63.3
Rhsim03G0024800 Rhododendron simsii HOM05D007137 ORTHO05D008982 7.5e-79 297.7 216 63.9
Aa31LG1G23770 Aethionema arabicum HOM05D007137 ORTHO05D008982 9.8e-79 297.4 180 77.8
CiPaw.09G038400 Carya illinoinensis HOM05D007137 ORTHO05D008982 9.8e-79 297.4 221 60.6
CSS0026997 Camellia sinensis var. sinensis HOM05D007137 ORTHO05D008982 1.7e-78 296.6 216 64.4
EL10Ac3g07093 Beta vulgaris HOM05D007137 ORTHO05D008982 6.3e-78 294.7 227 59.5
Migut.J01757 Erythranthe guttata HOM05D007137 ORTHO05D008982 8.3e-78 294.3 228 60.1
Haze_19852 Corylus avellana HOM05D007137 ORTHO05D008982 1.1e-77 293.9 210 61.4
Dinv39605 Davidia involucrata HOM05D007137 ORTHO05D008982 1.1e-77 293.9 222 60.4
Rhsim03G0024600 Rhododendron simsii HOM05D007137 ORTHO05D008982 2.4e-77 292.7 216 63.0
Sc13g0001720 Simmondsia chinensis HOM05D007137 ORTHO05D008982 2.4e-77 292.7 223 59.2
Duzib093G1775 Durio zibethinus HOM05D007137 ORTHO05D008982 3.1e-77 292.4 230 57.4
Cc06_g17570 Coffea canephora HOM05D007137 ORTHO05D008982 4.1e-77 292.0 216 60.2
Lj5g0009390 Lotus japonicus HOM05D007137 ORTHO05D008982 4.1e-77 292.0 217 62.2
TWI74G1615 Tripterygium wilfordii HOM05D007137 ORTHO05D008982 7.0e-77 291.2 211 62.6
Ca_26019_v3 Cicer arietinum L. HOM05D007137 ORTHO05D008982 9.2e-77 290.8 219 59.8
Thecc.05G153200 Theobroma cacao HOM05D007137 ORTHO05D008982 1.2e-76 290.4 229 57.2
Potri.006G051500 Populus trichocarpa HOM05D007137 ORTHO05D008982 3.5e-76 288.9 218 59.2
Sopen04g007840 Solanum pennellii HOM05D007137 ORTHO05D008982 3.5e-76 288.9 219 57.5
PGSC0003DMG400027277 Solanum tuberosum HOM05D007137 ORTHO05D008982 3.5e-76 288.9 218 57.8
Hma1.2p1_2002F.1_g310780 Hydrangea macrophylla HOM05D007137 ORTHO05D008982 7.8e-76 287.7 215 60.9
Solyc04g015760.4 Solanum lycopersicum HOM05D007137 ORTHO05D008982 7.8e-76 287.7 219 57.1
TPR.G10636 Trifolium pratense HOM05D007137 ORTHO05D008982 7.8e-76 287.7 219 59.4
AUR62024453 Chenopodium quinoa HOM05D007137 ORTHO05D008982 1.3e-75 287.0 212 59.9
Medtr7g034355 Medicago truncatula HOM05D007137 ORTHO05D008982 1.7e-75 286.6 219 59.8
Nn2g15218 Nelumbo nucifera HOM05D007137 ORTHO05D008982 1.7e-75 286.6 222 59.9
PGR004G0226 Punica granatum HOM05D007137 ORTHO05D008982 1.7e-75 286.6 223 59.2
AUR62026042 Chenopodium quinoa HOM05D007137 ORTHO05D008982 3.8e-75 285.4 215 59.5
Nitab4.5_0010636g0030 Nicotiana tabacum HOM05D007137 ORTHO05D008982 8.6e-75 284.3 223 56.5
Phvul.007G252600 Phaseolus vulgaris HOM05D007137 ORTHO05D008982 1.1e-74 283.9 219 59.8
Prupe.7G059700 Prunus persica HOM05D007137 ORTHO05D008982 1.5e-74 283.5 219 59.8
CANSAT80G1960 Cannabis sativa HOM05D007137 ORTHO05D008982 1.9e-74 283.1 229 57.2
CANSAT80G0539 Cannabis sativa HOM05D007137 ORTHO05D008982 3.3e-74 282.3 229 57.2
Peaxi162Scf00130g00019 Petunia axillaris HOM05D007137 ORTHO05D008982 5.6e-74 281.6 218 56.4
FAN09G1348 Fragaria x ananassa HOM05D007137 ORTHO05D008982 7.3e-74 281.2 223 57.8
QL07p000577 Quercus lobata HOM05D007137 ORTHO05D008982 7.3e-74 281.2 212 60.4
FAN05G2215 Fragaria x ananassa HOM05D007137 ORTHO05D008982 1.2e-73 280.4 233 55.8
Nitab4.5_0005195g0030 Nicotiana tabacum HOM05D007137 ORTHO05D008982 1.2e-73 280.4 223 56.5
GSVIVG01033260001 Vitis vinifera HOM05D007137 ORTHO05D008982 2.1e-73 279.6 218 59.6
RcHm_v2.0_Chr3g0482531 Rosa chinensis HOM05D007137 ORTHO05D008982 2.8e-73 279.3 233 55.8
FvH4_6g23850 Fragaria vesca HOM05D007137 ORTHO05D008982 3.6e-73 278.9 223 57.0
MD12G1074200 Malus domestica HOM05D007137 ORTHO05D008982 4.7e-73 278.5 232 56.9
Sabra06G0036100 Salix brachista HOM05D007137 ORTHO05D008982 6.1e-73 278.1 221 56.6
Oeu008913.1 Olea europaea HOM05D007137 ORTHO05D008982 8.0e-73 277.7 215 59.5
Oeu008915.1 Olea europaea HOM05D007137 ORTHO05D008982 8.0e-73 277.7 215 59.5
MSTRG.6429 Avicennia marina HOM05D007137 ORTHO05D008982 2.3e-72 276.2 215 60.0
Lalb_Chr21g0316491 Lupinus albus HOM05D007137 ORTHO05D008982 2.3e-72 276.2 223 57.8
Glyma.10G097900 Glycine max HOM05D007137 ORTHO05D008982 5.2e-72 275.0 219 59.4
Eucgr.A02346 Eucalyptus grandis HOM05D007137 ORTHO05D008982 1.2e-71 273.9 217 57.6
HanXRQChr15g0491151 Helianthus annuus HOM05D007137 ORTHO05D008982 4.4e-71 271.9 216 59.7
Sed0021909 Sechium edule HOM05D007137 ORTHO05D008982 9.8e-71 270.8 233 56.7
Lsat_1_v5_gn_9_29000 Lactuca sativa HOM05D007137 ORTHO05D008982 1.7e-70 270.0 217 57.6
Hund24707 Selenicereus undatus HOM05D007137 ORTHO05D008982 1.4e-69 266.9 214 56.1
MELO3C009672.2 Cucumis melo HOM05D007137 ORTHO05D008982 1.2e-68 263.8 218 55.5
CsaV3_3G039290 Cucumis sativus L. HOM05D007137 ORTHO05D008982 1.2e-68 263.8 218 55.5
ECA247G4023 Erigeron canadensis HOM05D007137 ORTHO05D008982 2.7e-68 262.7 215 57.2
CAN.G1456.1 Capsicum annuum HOM05D007137 ORTHO05D008982 4.6e-68 261.9 193 60.1
Atru.BG.154.p Acer truncatum HOM05D007137 ORTHO05D008982 3.3e-66 255.8 212 56.6
Aqoxy1G00329 Aquilegia oxysepala HOM05D007137 ORTHO05D008982 5.6e-66 255.0 228 54.4
PSO384G0937 Papaver somniferum HOM05D007137 ORTHO05D008982 3.6e-65 252.3 216 57.4
Psat6g120120 Pisum sativum HOM05D007137 ORTHO05D008982 8.9e-64 247.7 167 67.7
Ah.04g151610 Amaranthus hybridus HOM05D000942 ORTHO05D000918 2.6e-63 246.1 210 54.3
arahy.Tifrunner.gnm1.ann1.QC7DP1 Arachis hypogaea HOM05D007137 ORTHO05D008982 9.8e-63 244.2 217 51.6
SalBow6G6768 Salvia bowleyana HOM05D007137 ORTHO05D008982 6.4e-62 241.5 244 50.4
CAN.G676.70 Capsicum annuum HOM05D007137 ORTHO05D008982 1.1e-61 240.7 200 55.5
MBI17_g01631_MAGBIO Magnolia biondii HOM05D007137 ORTHO05D008982 2.1e-60 236.5 219 53.0
Manes.09G022100 Manihot esculenta HOM05D007137 ORTHO05D008982 3.9e-59 232.3 217 51.6
SGA_v2.0_scaffold105G30410 Striga asiatica HOM05D007137 ORTHO05D008982 1.1e-58 230.7 201 54.7
arahy.Tifrunner.gnm1.ann1.F03MXT Arachis hypogaea HOM05D007137 ORTHO05D008982 3.3e-58 229.2 205 52.2
Lju124C41G12 Lonicera japonica HOM05D007137 ORTHO05D008982 3.6e-57 225.7 163 62.6
Os05g0387900 Oryza sativa ssp. japonica HOM05D007137 ORTHO05D008982 1.1e-56 224.2 221 50.2
Cpa.g.sc92.53 Carica papaya HOM05D007137 ORTHO05D008982 1.2e-55 220.7 162 62.3
DCAR_020492 Daucus carota HOM05D007137 ORTHO05D008982 5.4e-53 211.8 162 59.9
HPP92_001018 Vanilla planifolia HOM05D007137 ORTHO05D008982 5.4e-53 211.8 205 50.2
CDE02G1742 Ceratophyllum demersum HOM05D007137 ORTHO05D008982 9.2e-53 211.1 188 54.8
ATR0320G015 Amborella trichopoda HOM05D007137 ORTHO05D008982 1.7e-51 206.8 228 44.3
CSS0041211 Camellia sinensis var. sinensis HOM05D007137 ORTHO05D008982 7.3e-50 201.4 177 56.5
ClCG10G017100 Citrullus lanatus HOM05D007137 ORTHO05D008982 6.8e-48 194.9 243 42.0
Mapoly0062s0037 Marchantia polymorpha HOM05D007137 ORTHO05D008982 1.7e-46 190.3 203 48.8
FAN02G0118 Fragaria x ananassa HOM05D007137 ORTHO05D008982 4.9e-46 188.7 141 64.5
Pp3c8_16370 Physcomitrium patens HOM05D007137 ORTHO05D008982 5.6e-42 175.3 183 45.9
SMO353G0157 Selaginella moellendorffii HOM05D007137 ORTHO05D008982 7.3e-42 174.9 206 43.2
SMO302G0006 Selaginella moellendorffii HOM05D007137 ORTHO05D008982 9.6e-42 174.5 212 43.9
Hma1.2p1_2520F.1_g323835 Hydrangea macrophylla HOM05D007137 ORTHO05D008982 1.4e-40 170.6 113 69.0
Rhsim03G0024200 Rhododendron simsii HOM05D007137 ORTHO05D008982 1.3e-22 110.9 159 37.7
Zm00001eb286980 Zea mays HOM05D007137 ORTHO05D008982 1.7e-22 110.5 87 56.3
VMungo0720G0821 Vigna mungo HOM05D007137 ORTHO05D008982 1.9e-21 107.1 97 49.5
CBR_g39180 Chara braunii HOM05D007137 ORTHO05D008982 8.7e-19 98.2 95 50.5
CSS0024811 Camellia sinensis var. sinensis HOM05D007137 ORTHO05D008982 4.3e-18 95.9 81 54.3
SEGI_00420 Sequoiadendron giganteum HOM05D007137 ORTHO05D008982 1.7e-14 84.0 86 41.9
Cre04.g217912 Chlamydomonas reinhardtii HOM05D007137 ORTHO05D008982 7.1e-13 78.6 90 43.3


User provided reference genes

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