Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p27240 Brassica napus HOM05D006307 ORTHO05D008123 3.4e-160 568.5 344 100.0
BolC3t15106H Brassica oleracea HOM05D006307 ORTHO05D008123 2.9e-159 565.5 344 99.1
A03p22960 Brassica napus HOM05D006307 ORTHO05D008123 1.6e-149 533.1 344 89.2
BraA03t11519Z Brassica rapa HOM05D006307 ORTHO05D008123 8.1e-130 467.6 344 81.7
Sp4g23140 Schrenkiella parvula HOM05D006307 ORTHO05D008123 4.2e-118 428.7 347 72.6
BcaB01g03513 Brassica carinata HOM05D006307 ORTHO05D008123 6.7e-116 421.4 353 75.1
Thhalv10016922m.g Eutrema salsugineum HOM05D006307 ORTHO05D008123 8.2e-106 387.9 354 67.5
BraA03t11518Z Brassica rapa HOM05D006307 ORTHO05D008123 4.5e-96 355.5 333 66.1
AL4G38760 Arabidopsis lyrata HOM05D006307 ORTHO05D008123 5.9e-96 355.1 355 63.9
Carub.0004s2313 Capsella rubella HOM05D006307 ORTHO05D008123 1.3e-95 354.0 352 61.6
C03p27220 Brassica napus HOM05D006307 ORTHO05D008123 2.9e-95 352.8 351 63.2
BolC3t15104H Brassica oleracea HOM05D006307 ORTHO05D008123 2.9e-95 352.8 351 63.2
A03p22950 Brassica napus HOM05D006307 ORTHO05D008123 1.9e-94 350.1 343 66.2
AT2G40815 Arabidopsis thaliana HOM05D006307 ORTHO05D008123 7.5e-91 338.2 399 55.6
CARHR135930 Cardamine hirsuta HOM05D006307 ORTHO05D008123 5.3e-89 332.0 350 61.1
BcaC01g05375 Brassica carinata HOM05D006307 ORTHO05D008123 1.6e-85 320.5 272 67.3
Aa31LG3G1290 Aethionema arabicum HOM05D006307 ORTHO05D008123 1.6e-80 303.9 380 51.3
THA.LOC104824373 Tarenaya hassleriana HOM05D006307 ORTHO05D008123 1.5e-67 260.8 368 47.8
C03p27230 Brassica napus HOM05D006307 ORTHO05D008123 6.2e-61 238.8 216 62.0
BolC3t15105H Brassica oleracea HOM05D006307 ORTHO05D008123 5.2e-60 235.7 216 61.6
BcaB01g03514 Brassica carinata HOM05D006307 ORTHO05D008123 1.3e-58 231.1 218 62.8
Duzib114G0239 Durio zibethinus HOM05D006307 ORTHO05D008123 7.0e-57 225.3 359 42.3
COL.COLO4_19496 Corchorus olitorius HOM05D006307 ORTHO05D008123 2.3e-55 220.3 367 43.6
Gorai.012G012900 Gossypium raimondii HOM05D006307 ORTHO05D008123 3.0e-55 219.9 353 44.5
Cfa001179 Carpinus fangiana HOM05D006307 ORTHO05D008123 2.5e-54 216.9 358 47.8
Thecc.10G187500 Theobroma cacao HOM05D006307 ORTHO05D008123 2.5e-54 216.9 362 42.5
Gohir.D04G010800 Gossypium hirsutum HOM05D006307 ORTHO05D008123 6.2e-53 212.2 351 43.9
Nitab4.5_0000103g0020 Nicotiana tabacum HOM05D006307 ORTHO05D008123 6.2e-53 212.2 360 41.4
Gohir.A05G404900 Gossypium hirsutum HOM05D006307 ORTHO05D008123 8.1e-53 211.8 351 44.2
GSVIVG01032869001 Vitis vinifera HOM05D006307 ORTHO05D008123 8.1e-53 211.8 337 49.6
Dinv34513 Davidia involucrata HOM05D006307 ORTHO05D008123 1.1e-52 211.5 361 45.7
Manes.07G141400 Manihot esculenta HOM05D006307 ORTHO05D008123 1.1e-52 211.5 352 44.3
Ciclev10033529m.g Citrus clementina HOM05D006307 ORTHO05D008123 1.8e-52 210.7 339 44.0
Nitab4.5_0001493g0020 Nicotiana tabacum HOM05D006307 ORTHO05D008123 5.2e-52 209.1 357 41.2
Haze_17382 Corylus avellana HOM05D006307 ORTHO05D008123 1.5e-51 207.6 361 48.5
Cpa.g.sc65.81 Carica papaya HOM05D006307 ORTHO05D008123 2.0e-51 207.2 358 47.2
Dinv21870 Davidia involucrata HOM05D006307 ORTHO05D008123 7.5e-51 205.3 359 43.5
CiPaw.01G088900 Carya illinoinensis HOM05D006307 ORTHO05D008123 1.3e-50 204.5 355 45.1
PGSC0003DMG400005260 Solanum tuberosum HOM05D006307 ORTHO05D008123 1.3e-50 204.5 331 44.1
Potri.019G065500 Populus trichocarpa HOM05D006307 ORTHO05D008123 2.2e-50 203.8 351 43.6
Sopen03g025310 Solanum pennellii HOM05D006307 ORTHO05D008123 4.9e-50 202.6 339 43.7
CAN.G77.11 Capsicum annuum HOM05D006307 ORTHO05D008123 8.3e-50 201.8 380 39.7
Atru.chr12.221 Acer truncatum HOM05D006307 ORTHO05D008123 1.1e-49 201.4 379 39.8
Sabra19G0079000 Salix brachista HOM05D006307 ORTHO05D008123 2.4e-49 200.3 350 43.1
FvH4_7g26311 Fragaria vesca HOM05D006307 ORTHO05D008123 3.2e-49 199.9 374 41.2
TAR633G2235 Trochodendron aralioides HOM05D006307 ORTHO05D008123 4.1e-49 199.5 345 43.8
Ca_05544_v3 Cicer arietinum L. HOM05D006307 ORTHO05D008123 1.2e-48 198.0 330 42.4
FAN01G0868 Fragaria x ananassa HOM05D006307 ORTHO05D008123 1.2e-48 198.0 377 41.6
TWI09G1245 Tripterygium wilfordii HOM05D006307 ORTHO05D008123 1.6e-48 197.6 360 40.6
Actinidia01018 Actinidia chinensis HOM05D006307 ORTHO05D008123 3.0e-47 193.4 330 44.2
RcHm_v2.0_Chr1g0372771 Rosa chinensis HOM05D006307 ORTHO05D008123 3.0e-47 193.4 390 39.5
QL08p065320 Quercus lobata HOM05D006307 ORTHO05D008123 8.6e-47 191.8 333 44.4
CANSAT56G1764 Cannabis sativa HOM05D006307 ORTHO05D008123 4.3e-46 189.5 366 39.1
PGR044G1713 Punica granatum HOM05D006307 ORTHO05D008123 4.3e-46 189.5 376 42.0
Rhsim09G0187400 Rhododendron simsii HOM05D006307 ORTHO05D008123 9.5e-46 188.3 360 42.2
Prupe.2G267300 Prunus persica HOM05D006307 ORTHO05D008123 1.2e-45 188.0 381 39.9
BcaC01g05374 Brassica carinata HOM05D006307 ORTHO05D008123 1.6e-45 187.6 161 62.7
ECA233G0944 Erigeron canadensis HOM05D006307 ORTHO05D008123 1.6e-45 187.6 335 40.9
Glyma.14G187500 Glycine max HOM05D006307 ORTHO05D008123 1.6e-45 187.6 326 43.3
EL10Ac2g02693 Beta vulgaris HOM05D006307 ORTHO05D008123 2.1e-45 187.2 362 44.2
AUR62032552 Chenopodium quinoa HOM05D006307 ORTHO05D008123 6.2e-45 185.7 359 41.8
Cc02_g05030 Coffea canephora HOM05D006307 ORTHO05D008123 8.1e-45 185.3 353 44.2
Psat2g060080 Pisum sativum HOM05D006307 ORTHO05D008123 8.1e-45 185.3 326 40.8
Nn2g10220 Nelumbo nucifera HOM05D006307 ORTHO05D008123 4.0e-44 183.0 335 39.4
MD01G1172000 Malus domestica HOM05D006307 ORTHO05D008123 5.2e-44 182.6 394 40.1
Ah.10g029650 Amaranthus hybridus HOM05D006307 ORTHO05D008123 1.2e-43 181.4 333 44.7
vmacro09945 Vaccinium macrocarpon HOM05D006307 ORTHO05D008123 1.5e-43 181.0 343 45.5
TWI73G0583 Tripterygium wilfordii HOM05D006307 ORTHO05D008123 2.0e-43 180.6 354 38.4
arahy.Tifrunner.gnm1.ann1.78S8ZN Arachis hypogaea HOM05D006307 ORTHO05D008123 3.4e-43 179.9 338 42.0
arahy.Tifrunner.gnm1.ann1.8Y6D9P Arachis hypogaea HOM05D006307 ORTHO05D008123 5.8e-43 179.1 338 41.7
AUR62031669 Chenopodium quinoa HOM05D006307 ORTHO05D008123 9.9e-43 178.3 235 48.5
Lsat_1_v5_gn_8_11140 Lactuca sativa HOM05D006307 ORTHO05D008123 9.9e-43 178.3 355 42.5
LjContig00155g0000391 Lotus japonicus HOM05D006307 ORTHO05D008123 1.3e-42 177.9 332 41.6
MSTRG.27248 Avicennia marina HOM05D006307 ORTHO05D008123 4.9e-42 176.0 323 48.0
HanXRQChr14g0441281 Helianthus annuus HOM05D006307 ORTHO05D008123 4.9e-42 176.0 349 39.0
Eucgr.J00096 Eucalyptus grandis HOM05D006307 ORTHO05D008123 8.4e-42 175.3 380 39.5
Glyma.02G220300 Glycine max HOM05D006307 ORTHO05D008123 1.1e-41 174.9 326 45.4
Eucgr.G03171 Eucalyptus grandis HOM05D006307 ORTHO05D008123 3.2e-41 173.3 358 40.5
Cc02_g04860 Coffea canephora HOM05D006307 ORTHO05D008123 1.6e-40 171.0 170 54.7
Ah.12g064690 Amaranthus hybridus HOM05D006307 ORTHO05D008123 2.1e-40 170.6 353 41.1
PGR142G3034 Punica granatum HOM05D006307 ORTHO05D008123 3.5e-40 169.9 161 55.3
MD07G1238500 Malus domestica HOM05D006307 ORTHO05D008123 4.6e-40 169.5 159 56.0
Medtr5g068530 Medicago truncatula HOM05D006307 ORTHO05D008123 1.0e-39 168.3 326 39.6
Aqoxy4G03315 Aquilegia oxysepala HOM05D006307 ORTHO05D008123 2.3e-39 167.2 167 56.9
Phvul.008G187400 Phaseolus vulgaris HOM05D006307 ORTHO05D008123 2.3e-39 167.2 285 42.8
Lj1g0008062 Lotus japonicus HOM05D006307 ORTHO05D008123 1.9e-38 164.1 323 38.7
Lalb_Chr10g0102911 Lupinus albus HOM05D006307 ORTHO05D008123 5.6e-38 162.5 343 39.1
PSO384G0230 Papaver somniferum HOM05D006307 ORTHO05D008123 5.6e-38 162.5 195 48.7
Sc11g0006110 Simmondsia chinensis HOM05D006307 ORTHO05D008123 5.6e-38 162.5 358 43.9
Glyma.06G140100 Glycine max HOM05D006307 ORTHO05D008123 9.6e-38 161.8 363 35.3
VMungo0647G2347 Vigna mungo HOM05D006307 ORTHO05D008123 2.1e-37 160.6 322 42.5
arahy.Tifrunner.gnm1.ann1.SS94V0 Arachis hypogaea HOM05D006307 ORTHO05D008123 2.8e-37 160.2 272 42.3
CDE04G1875 Ceratophyllum demersum HOM05D006307 ORTHO05D008123 2.8e-37 160.2 191 49.2
arahy.Tifrunner.gnm1.ann1.RI9J7M Arachis hypogaea HOM05D006307 ORTHO05D008123 3.6e-37 159.8 283 41.7
CSS0034849 Camellia sinensis var. sinensis HOM05D006307 ORTHO05D008123 4.7e-37 159.5 150 57.3
Lalb_Chr08g0239321 Lupinus albus HOM05D006307 ORTHO05D008123 1.8e-36 157.5 329 37.7
TPR.G27912 Trifolium pratense HOM05D006307 ORTHO05D008123 3.1e-36 156.8 211 46.0
SalBow3G4635 Salvia bowleyana HOM05D006307 ORTHO05D008123 6.8e-36 155.6 148 57.4
Glyma.04G224600 Glycine max HOM05D006307 ORTHO05D008123 1.5e-35 154.5 332 37.0
Medtr5g069320 Medicago truncatula HOM05D006307 ORTHO05D008123 1.5e-35 154.5 154 53.9
Migut.F00561 Erythranthe guttata HOM05D006307 ORTHO05D008123 4.4e-35 152.9 185 49.2
PSO339G5993 Papaver somniferum HOM05D006307 ORTHO05D008123 2.2e-34 150.6 228 41.7
Ca_16847_v3 Cicer arietinum L. HOM05D006307 ORTHO05D008123 5.4e-33 146.0 317 35.3
Phvul.009G041400 Phaseolus vulgaris HOM05D006307 ORTHO05D008123 1.6e-32 144.4 355 34.1
VMungo1309G1947 Vigna mungo HOM05D006307 ORTHO05D008123 1.3e-31 141.4 351 33.9
Zm00001eb149710 Zea mays HOM05D006307 ORTHO05D008123 1.3e-31 141.4 292 36.6
Medtr3g093560 Medicago truncatula HOM05D006307 ORTHO05D008123 2.3e-31 140.6 337 35.6
HPP92_019043 Vanilla planifolia HOM05D006307 ORTHO05D008123 8.7e-31 138.7 243 41.2
SGA_v2.0_scaffold60G20871 Striga asiatica HOM05D006307 ORTHO05D008123 2.5e-30 137.1 297 41.8
Solyc03g095300.4 Solanum lycopersicum HOM05D006307 ORTHO05D008123 9.6e-30 135.2 133 55.6
TPR.G13964 Trifolium pratense HOM05D006307 ORTHO05D008123 1.6e-29 134.4 322 33.2
Os01g0818100 Oryza sativa ssp. japonica HOM05D006307 ORTHO05D008123 1.8e-28 131.0 252 36.9
ATR1127G014 Amborella trichopoda HOM05D006307 ORTHO05D008123 1.1e-25 121.7 235 39.6
Psat5g070080 Pisum sativum HOM05D006307 ORTHO05D008123 2.7e-24 117.1 345 32.2
Actinidia07776 Actinidia chinensis HOM05D006307 ORTHO05D008123 5.6e-22 109.4 157 44.6
SEGI_32602 Sequoiadendron giganteum HOM05D006307 ORTHO05D008123 4.8e-21 106.3 157 41.4
Actinidia31756 Actinidia chinensis HOM05D006307 ORTHO05D008123 1.7e-18 97.8 261 34.5
CAN.G70.11 Capsicum annuum HOM05D006307 ORTHO05D008123 2.4e-17 94.0 95 56.8
DCAR_018052 Daucus carota HOM05D006307 ORTHO05D009387 2.7e-16 90.5 268 40.3
BcaC07g39527 Brassica carinata HOM05D006307 ORTHO05D008123 2.2e-10 70.9 50 74.0
BcaC01g00185 Brassica carinata HOM05D006307 ORTHO05D092662 7.1e-09 65.9 50 70.0
SMO172G0022 Selaginella moellendorffii HOM05D001109 ORTHO05D001051 5.1e-07 59.7 146 29.5
Lj4g0001384 Lotus japonicus HOM05D006307 ORTHO05D008123 1.1e-06 58.5 134 38.1
Ciclev10021815m.g Citrus clementina HOM05D001109 ORTHO05D001051 3.3e-06 57.0 99 34.3
Migut.N01575 Erythranthe guttata HOM05D001109 ORTHO05D001051 5.7e-06 56.2 86 36.0


User provided reference genes

Program Settings