Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p25950 Brassica napus HOM05D004732 ORTHO05D005424 1.5e-122 443.0 235 100.0
BolC3t14980H Brassica oleracea HOM05D004732 ORTHO05D005424 4.1e-117 424.9 235 96.2
A03p21880 Brassica napus HOM05D004732 ORTHO05D005424 1.3e-110 403.3 238 91.6
BraA03t11424Z Brassica rapa HOM05D004732 ORTHO05D005424 1.3e-110 403.3 238 91.6
Sp4g21500 Schrenkiella parvula HOM05D004732 ORTHO05D005424 3.2e-101 372.1 238 86.1
BcaB01g03649 Brassica carinata HOM05D004732 ORTHO05D005424 3.9e-99 365.2 236 86.9
AT2G39170 Arabidopsis thaliana HOM05D004732 ORTHO05D005424 2.6e-95 352.4 237 81.9
Carub.0004s2121 Capsella rubella HOM05D004732 ORTHO05D005424 9.9e-95 350.5 238 81.1
Thhalv10017199m.g Eutrema salsugineum HOM05D004732 ORTHO05D005424 2.2e-94 349.4 227 85.0
AL4G36450 Arabidopsis lyrata HOM05D004732 ORTHO05D005424 8.4e-94 347.4 246 79.3
CARHR133920 Cardamine hirsuta HOM05D004732 ORTHO05D005424 3.5e-92 342.0 244 78.7
BcaC02g12913 Brassica carinata HOM05D004732 ORTHO05D005424 2.4e-88 329.3 243 76.1
Aa31LG5G20320 Aethionema arabicum HOM05D004732 ORTHO05D005424 3.0e-75 285.8 253 70.4
THA.LOC104825219 Tarenaya hassleriana HOM05D004732 ORTHO05D005424 3.5e-68 262.3 268 60.4
CSS0011754 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 1.4e-53 213.8 270 47.8
CSS0002562 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 1.9e-53 213.4 270 47.8
Cpa.g.sc53.137 Carica papaya HOM05D004732 ORTHO05D005424 7.9e-52 208.0 262 50.0
RcHm_v2.0_Chr1g0362511 Rosa chinensis HOM05D004732 ORTHO05D005424 1.4e-51 207.2 264 49.2
Potri.010G227400 Populus trichocarpa HOM05D004732 ORTHO05D005424 2.3e-51 206.5 262 47.3
MSTRG.9148 Avicennia marina HOM05D004732 ORTHO05D005424 8.8e-51 204.5 245 48.6
FvH4_7g18740 Fragaria vesca HOM05D004732 ORTHO05D005424 8.8e-51 204.5 264 48.9
FAN06G4015 Fragaria x ananassa HOM05D004732 ORTHO05D005424 1.1e-50 204.1 264 48.9
FAN06G4691 Fragaria x ananassa HOM05D004732 ORTHO05D005424 1.1e-50 204.1 264 48.9
Dinv36389 Davidia involucrata HOM05D004732 ORTHO05D005424 2.0e-50 203.4 273 45.4
Hma1.2p1_0145F.1_g065340 Hydrangea macrophylla HOM05D004732 ORTHO05D005424 3.3e-50 202.6 266 48.5
FAN03G2537 Fragaria x ananassa HOM05D004732 ORTHO05D005424 4.4e-50 202.2 264 49.2
QL08p054295 Quercus lobata HOM05D004732 ORTHO05D005424 4.4e-50 202.2 259 49.4
Prupe.2G208500 Prunus persica HOM05D004732 ORTHO05D005424 5.7e-50 201.8 265 49.1
FAN10G0773 Fragaria x ananassa HOM05D004732 ORTHO05D005424 1.7e-49 200.3 264 48.1
Sabra08G0023400 Salix brachista HOM05D004732 ORTHO05D005424 1.7e-49 200.3 259 47.9
TWI63G1095 Tripterygium wilfordii HOM05D004732 ORTHO05D005424 1.7e-49 200.3 263 51.0
CiPaw.01G268400 Carya illinoinensis HOM05D004732 ORTHO05D005424 2.2e-49 199.9 270 50.4
FAN10G1669 Fragaria x ananassa HOM05D004732 ORTHO05D005424 3.7e-49 199.1 251 49.0
FAN01G0719 Fragaria x ananassa HOM05D004732 ORTHO05D005424 4.8e-49 198.7 262 48.1
ClCG08G007740 Citrullus lanatus HOM05D004732 ORTHO05D005424 8.2e-49 198.0 255 49.4
MELO3C019827.2 Cucumis melo HOM05D004732 ORTHO05D005424 8.2e-49 198.0 254 49.2
Thecc.10G084000 Theobroma cacao HOM05D004732 ORTHO05D005424 1.1e-48 197.6 275 46.9
Cc02_g10890 Coffea canephora HOM05D004732 ORTHO05D005424 1.4e-48 197.2 226 49.6
COL.COLO4_34217 Corchorus olitorius HOM05D004732 ORTHO05D005424 1.4e-48 197.2 270 46.3
Actinidia18609 Actinidia chinensis HOM05D004732 ORTHO05D005424 3.1e-48 196.1 258 46.9
Sabra10G0175400 Salix brachista HOM05D004732 ORTHO05D005424 9.1e-48 194.5 261 46.0
Sed0004517 Sechium edule HOM05D004732 ORTHO05D005424 9.1e-48 194.5 256 49.2
Haze_16742 Corylus avellana HOM05D004732 ORTHO05D005424 1.2e-47 194.1 274 46.7
PGR142G3551 Punica granatum HOM05D004732 ORTHO05D005424 1.6e-47 193.7 267 48.3
TWI38G0470 Tripterygium wilfordii HOM05D004732 ORTHO05D005424 1.6e-47 193.7 177 61.6
Gorai.010G207000 Gossypium raimondii HOM05D004732 ORTHO05D005424 2.6e-47 193.0 248 49.2
Gohir.A06G168400 Gossypium hirsutum HOM05D004732 ORTHO05D005424 1.3e-46 190.7 257 47.1
Gohir.D06G176100 Gossypium hirsutum HOM05D004732 ORTHO05D005424 1.7e-46 190.3 257 47.1
Potri.008G035000 Populus trichocarpa HOM05D004732 ORTHO05D005424 1.7e-46 190.3 262 47.7
CANSAT56G1580 Cannabis sativa HOM05D004732 ORTHO05D005424 2.2e-46 189.9 252 48.4
Cfa001806 Carpinus fangiana HOM05D004732 ORTHO05D005424 2.9e-46 189.5 267 46.4
Duzib114G0073 Durio zibethinus HOM05D004732 ORTHO05D005424 2.9e-46 189.5 275 45.5
MD01G1102900 Malus domestica HOM05D004732 ORTHO05D005424 3.8e-46 189.1 253 46.6
Duzib106G0451 Durio zibethinus HOM05D004732 ORTHO05D005424 6.5e-46 188.3 275 42.9
GSVIVG01016214001 Vitis vinifera HOM05D004732 ORTHO05D005424 6.5e-46 188.3 269 45.4
Lalb_Chr03g0036231 Lupinus albus HOM05D004732 ORTHO05D005424 1.5e-45 187.2 262 45.8
vmacro07120 Vaccinium macrocarpon HOM05D004732 ORTHO05D005424 1.5e-45 187.2 247 48.6
RhsimUnG0118800 Rhododendron simsii HOM05D004732 ORTHO05D005424 1.9e-45 186.8 250 48.4
Solyc11g008310.3 Solanum lycopersicum HOM05D004732 ORTHO05D005424 1.9e-45 186.8 261 44.4
Sopen11g004120 Solanum pennellii HOM05D004732 ORTHO05D005424 1.9e-45 186.8 261 44.4
CAN.G321.58 Capsicum annuum HOM05D004732 ORTHO05D005424 2.5e-45 186.4 267 45.3
AUR62014489 Chenopodium quinoa HOM05D004732 ORTHO05D005424 3.2e-45 186.0 260 44.6
Psat6g092840 Pisum sativum HOM05D004732 ORTHO05D005424 3.2e-45 186.0 253 47.0
Eucgr.G02869 Eucalyptus grandis HOM05D004732 ORTHO05D005424 5.5e-45 185.3 268 45.1
Dinv31236 Davidia involucrata HOM05D004732 ORTHO05D005424 9.4e-45 184.5 273 46.2
CSS0018200 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 1.2e-44 184.1 184 54.9
PGSC0003DMG400007420 Solanum tuberosum HOM05D004732 ORTHO05D005424 1.2e-44 184.1 261 43.3
Lsat_1_v5_gn_8_20841 Lactuca sativa HOM05D004732 ORTHO05D005424 1.6e-44 183.7 222 49.1
Manes.10G050600 Manihot esculenta HOM05D004732 ORTHO05D005424 1.6e-44 183.7 262 43.9
Atru.chr12.848 Acer truncatum HOM05D004732 ORTHO05D005424 2.1e-44 183.3 280 41.4
AUR62034508 Chenopodium quinoa HOM05D004732 ORTHO05D005424 2.1e-44 183.3 260 44.6
Ciclev10033517m.g Citrus clementina HOM05D004732 ORTHO05D005424 2.7e-44 183.0 167 57.5
Aqoxy5G04328 Aquilegia oxysepala HOM05D004732 ORTHO05D005424 3.6e-44 182.6 247 46.6
CSS0040483 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 3.6e-44 182.6 184 53.8
Actinidia06737 Actinidia chinensis HOM05D004732 ORTHO05D005424 4.7e-44 182.2 172 58.7
Manes.07G133148 Manihot esculenta HOM05D004732 ORTHO05D005424 6.1e-44 181.8 266 43.6
Peaxi162Scf00145g01111 Petunia axillaris HOM05D004732 ORTHO05D005424 1.4e-43 180.6 267 42.7
Migut.F01953 Erythranthe guttata HOM05D004732 ORTHO05D005424 1.8e-43 180.3 239 46.9
CiPaw.02G171900 Carya illinoinensis HOM05D004732 ORTHO05D005424 1.1e-42 177.6 259 47.1
Duzib128G0895 Durio zibethinus HOM05D004732 ORTHO05D005424 3.3e-42 176.0 258 45.0
Glyma.10G207600 Glycine max HOM05D004732 ORTHO05D005424 3.3e-42 176.0 262 44.3
Nn3g18730 Nelumbo nucifera HOM05D004732 ORTHO05D005424 3.3e-42 176.0 260 44.2
TAR375G0434 Trochodendron aralioides HOM05D004732 ORTHO05D005424 3.3e-42 176.0 254 44.5
DCAR_019084 Daucus carota HOM05D004732 ORTHO05D005424 4.4e-42 175.6 269 44.6
Ah.05g176860 Amaranthus hybridus HOM05D004732 ORTHO05D005424 7.5e-42 174.9 238 46.2
Nitab4.5_0001450g0120 Nicotiana tabacum HOM05D004732 ORTHO05D005424 7.5e-42 174.9 267 42.3
arahy.Tifrunner.gnm1.ann1.02EZ4F Arachis hypogaea HOM05D004732 ORTHO05D005424 2.2e-41 173.3 253 43.5
arahy.Tifrunner.gnm1.ann1.94M352 Arachis hypogaea HOM05D004732 ORTHO05D005424 3.7e-41 172.6 253 43.5
Gohir.A10G202350 Gossypium hirsutum HOM05D004732 ORTHO05D005424 4.8e-41 172.2 170 55.3
HanXRQChr08g0218501 Helianthus annuus HOM05D004732 ORTHO05D005424 8.2e-41 171.4 248 44.8
MBI02_g03608_MAGBIO Magnolia biondii HOM05D004732 ORTHO05D005424 8.2e-41 171.4 254 40.9
Lj5g0023337 Lotus japonicus HOM05D004732 ORTHO05D005424 1.1e-40 171.0 254 42.9
CsaV3_6G036730 Cucumis sativus L. HOM05D004732 ORTHO05D005424 1.4e-40 170.6 235 47.2
SalBow4G1144 Salvia bowleyana HOM05D004732 ORTHO05D005424 1.4e-40 170.6 271 41.3
EL10Ac1g00627 Beta vulgaris HOM05D004732 ORTHO05D005424 2.4e-40 169.9 241 46.5
Medtr1g050538 Medicago truncatula HOM05D004732 ORTHO05D005424 2.4e-40 169.9 250 43.2
Gohir.D10G210533 Gossypium hirsutum HOM05D004732 ORTHO05D005424 4.1e-40 169.1 170 54.7
Gorai.011G236000 Gossypium raimondii HOM05D004732 ORTHO05D005424 4.1e-40 169.1 170 54.7
Nitab4.5_0006187g0020 Nicotiana tabacum HOM05D004732 ORTHO05D005424 4.1e-40 169.1 270 40.7
Oeu013844.1 Olea europaea HOM05D004732 ORTHO05D005424 5.3e-40 168.7 256 42.2
Peaxi162Scf00176g00155 Petunia axillaris HOM05D004732 ORTHO05D005424 1.2e-39 167.5 172 52.9
Psat6g179960 Pisum sativum HOM05D004732 ORTHO05D005424 2.7e-39 166.4 254 42.5
Nitab4.5_0000096g0300 Nicotiana tabacum HOM05D004732 ORTHO05D005424 3.5e-39 166.0 192 51.6
CSS0026895 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 4.5e-39 165.6 251 43.0
Medtr1g094180 Medicago truncatula HOM05D004732 ORTHO05D005424 1.3e-38 164.1 254 42.5
Nitab4.5_0001760g0030 Nicotiana tabacum HOM05D004732 ORTHO05D005424 1.3e-38 164.1 189 50.8
TPR.G10292 Trifolium pratense HOM05D004732 ORTHO05D005424 1.7e-38 163.7 254 44.1
Nitab4.5_0001359g0060 Nicotiana tabacum HOM05D004732 ORTHO05D005424 2.9e-38 162.9 242 45.5
TPR.G29265 Trifolium pratense HOM05D004732 ORTHO05D005424 2.9e-38 162.9 245 44.5
VMungo0720G2178 Vigna mungo HOM05D004732 ORTHO05D005424 5.0e-38 162.2 266 41.7
PSO782G0035 Papaver somniferum HOM05D004732 ORTHO05D005424 6.5e-38 161.8 239 43.9
Hund26901 Selenicereus undatus HOM05D004732 ORTHO05D005424 1.9e-37 160.2 239 44.8
Phvul.007G099100 Phaseolus vulgaris HOM05D004732 ORTHO05D005424 4.2e-37 159.1 263 41.8
Phvul.007G246300 Phaseolus vulgaris HOM05D004732 ORTHO05D005424 9.4e-37 157.9 236 46.2
PGSC0003DMG400044193 Solanum tuberosum HOM05D004732 ORTHO05D005424 2.1e-36 156.8 173 51.4
PGSC0003DMG402023369 Solanum tuberosum HOM05D004732 ORTHO05D005424 2.1e-36 156.8 173 51.4
Lalb_Chr02g0152071 Lupinus albus HOM05D004732 ORTHO05D005424 3.6e-36 156.0 187 46.0
Sopen05g034010 Solanum pennellii HOM05D004732 ORTHO05D005424 8.0e-36 154.8 173 51.4
Glyma.10G096300 Glycine max HOM05D004732 ORTHO05D005424 1.0e-35 154.5 250 42.0
Ca_10542_v3 Cicer arietinum L. HOM05D004732 ORTHO05D005424 1.8e-35 153.7 267 40.4
Ca_15771_v3 Cicer arietinum L. HOM05D004732 ORTHO05D005424 1.8e-35 153.7 267 40.4
Sopen02g011450 Solanum pennellii HOM05D000461 ORTHO05D005424 1.8e-35 153.7 173 50.3
ATR0810G210 Amborella trichopoda HOM05D004732 ORTHO05D005424 2.3e-35 153.3 270 38.5
PSO063G3184 Papaver somniferum HOM05D004732 ORTHO05D005424 6.8e-35 151.8 239 42.7
Solyc02g033070.1 Solanum lycopersicum HOM05D004732 ORTHO05D005424 8.8e-35 151.4 173 49.7
Ca_10759_v3 Cicer arietinum L. HOM05D004732 ORTHO05D005424 2.0e-34 150.2 114 65.8
Nitab4.5_0001278g0020 Nicotiana tabacum HOM05D004732 ORTHO05D005424 2.6e-34 149.8 219 42.5
CDE12G0653 Ceratophyllum demersum HOM05D004732 ORTHO05D005424 4.4e-34 149.1 259 38.2
unitig_37.g12315 Utricularia gibba HOM05D004732 ORTHO05D005424 1.7e-33 147.1 236 41.1
Sc15g0007120 Simmondsia chinensis HOM05D000232 ORTHO05D000145 3.7e-33 146.0 241 41.5
CSS0029312 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 1.4e-32 144.1 102 68.6
Lj5g0007347 Lotus japonicus HOM05D004732 ORTHO05D005424 2.4e-32 143.3 217 41.0
DCAR_006412 Daucus carota HOM05D004732 ORTHO05D005424 4.1e-32 142.5 266 38.3
Peaxi162Scf00253g00036 Petunia axillaris HOM05D004732 ORTHO05D005424 2.7e-31 139.8 228 40.4
Glyma.02G159000 Glycine max HOM05D004732 ORTHO05D005424 4.5e-31 139.0 120 58.3
Zm00001eb416240 Zea mays HOM05D004732 ORTHO05D005424 7.7e-31 138.3 248 35.9
Os08g0152500 Oryza sativa ssp. japonica HOM05D004732 ORTHO05D005424 2.2e-30 136.7 191 45.0
HanXRQChr12g0368861 Helianthus annuus HOM05D004732 ORTHO05D005424 2.9e-30 136.3 147 51.7
VMungo0720G2855 Vigna mungo HOM05D004732 ORTHO05D005424 3.8e-30 136.0 233 40.8
SGA_v2.0_scaffold13G06383 Striga asiatica HOM05D002264 ORTHO05D002413 5.0e-30 135.6 227 39.6
Lj2C21T4 Lonicera japonica HOM05D004732 ORTHO05D005424 1.1e-29 134.4 197 44.7
CDE04G0408 Ceratophyllum demersum HOM05D004732 ORTHO05D005424 7.2e-29 131.7 151 49.0
Peaxi162Scf00253g00416 Petunia axillaris HOM05D004732 ORTHO05D005424 1.2e-28 131.0 160 46.9
CAN.G694.37 Capsicum annuum HOM05D004732 ORTHO05D005424 2.3e-27 126.7 158 44.3
Solyc05g024140.1 Solanum lycopersicum HOM05D004732 ORTHO05D005424 3.7e-25 119.4 116 50.9
CSS0002308 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 2.0e-23 113.6 123 56.9
HPP92_012913 Vanilla planifolia HOM05D001191 ORTHO05D000979 5.0e-22 109.0 108 47.2
Solyc05g055560.1 Solanum lycopersicum HOM05D004732 ORTHO05D005424 5.6e-21 105.5 81 63.0
Sopen05g019060 Solanum pennellii HOM05D004732 ORTHO05D005424 2.2e-17 93.6 103 45.6
C04p67070 Brassica napus HOM05D004732 ORTHO05D005424 2.9e-17 93.2 110 61.8
Pp3c13_19230 Physcomitrium patens HOM05D004732 ORTHO05D005424 3.9e-14 82.8 87 42.5
AagrBONN_evm.TU.Sc2ySwM_117.3369 Anthoceros agrestis HOM05D004732 ORTHO05D005424 5.0e-14 82.4 211 31.3
Solyc05g024170.1 Solanum lycopersicum HOM05D004732 ORTHO05D005424 3.3e-13 79.7 73 52.1
SMO141G0002 Selaginella moellendorffii HOM05D004732 ORTHO05D005424 1.0e-11 74.7 153 29.4
SEGI_03345 Sequoiadendron giganteum HOM05D004732 ORTHO05D005424 1.0e-11 74.7 182 31.9
C02p30150 Brassica napus HOM05D045720 ORTHO05D005424 1.4e-11 74.3 74 64.9
CBR_g30284 Chara braunii HOM05D000004 ORTHO05D000002 5.2e-11 72.4 122 29.5
C08p36540 Brassica napus HOM05D045720 ORTHO05D005424 3.4e-10 69.7 68 67.6
HPP92_012890 Vanilla planifolia HOM05D004732 ORTHO05D005424 1.7e-09 67.4 247 30.4
RcHm_v2.0_Chr1g0384391 Rosa chinensis HOM05D004732 ORTHO05D005424 4.9e-09 65.9 164 36.0


User provided reference genes

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