Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p25530 Brassica napus HOM05D007159 ORTHO05D009068 7.5e-110 400.6 210 100.0
A03p21540 Brassica napus HOM05D007159 ORTHO05D009068 6.8e-95 350.9 217 89.4
BraA03t11390Z Brassica rapa HOM05D007159 ORTHO05D009068 9.2e-84 313.9 210 82.9
BolC3t14940H Brassica oleracea HOM05D007159 ORTHO05D009068 2.7e-83 312.4 212 82.1
Sp4g21050 Schrenkiella parvula HOM05D007159 ORTHO05D009068 1.2e-80 303.5 222 78.4
CARHR133370 Cardamine hirsuta HOM05D007159 ORTHO05D009068 1.6e-75 286.6 214 76.2
Carub.0004s2069 Capsella rubella HOM05D007159 ORTHO05D009068 6.0e-75 284.6 220 75.5
BcaNung04831 Brassica carinata HOM05D007159 ORTHO05D009068 1.7e-74 283.1 227 74.0
AL4G35990 Arabidopsis lyrata HOM05D007159 ORTHO05D009068 4.3e-73 278.5 216 72.7
AT2G38695 Arabidopsis thaliana HOM05D007159 ORTHO05D009068 9.5e-73 277.3 227 70.5
Thhalv10017229m.g Eutrema salsugineum HOM05D007159 ORTHO05D009068 1.0e-66 257.3 165 83.6
Aa31sc689G20 Aethionema arabicum HOM05D007159 ORTHO05D009068 1.0e-58 230.7 175 70.3
THA.LOC104824199 Tarenaya hassleriana HOM05D007159 ORTHO05D009068 3.6e-56 222.2 227 60.8
Aa31sc26G60 Aethionema arabicum HOM05D007159 ORTHO05D009068 7.6e-54 214.5 245 54.7
COL.COLO4_32863 Corchorus olitorius HOM05D007159 ORTHO05D009068 2.9e-53 212.6 140 73.6
GSVIVG01004028001 Vitis vinifera HOM05D007159 ORTHO05D009068 2.9e-53 212.6 175 65.1
GSVIVG01012409001 Vitis vinifera HOM05D007159 ORTHO05D009068 2.9e-53 212.6 166 69.3
GSVIVG01004020001 Vitis vinifera HOM05D007159 ORTHO05D009068 6.4e-53 211.5 153 71.2
MD02G1270600 Malus domestica HOM05D007159 ORTHO05D009068 8.4e-53 211.1 152 72.4
GSVIVG01012445001 Vitis vinifera HOM05D007159 ORTHO05D009068 1.1e-52 210.7 166 68.7
CiPaw.13G018000 Carya illinoinensis HOM05D007159 ORTHO05D009068 1.4e-52 210.3 150 70.7
Duzib128G1689 Durio zibethinus HOM05D007159 ORTHO05D009068 1.9e-52 209.9 183 61.7
QL04p022349 Quercus lobata HOM05D007159 ORTHO05D009068 4.2e-52 208.8 155 69.7
Ciclev10002366m.g Citrus clementina HOM05D007159 ORTHO05D009068 5.4e-52 208.4 160 66.2
Potri.003G190101 Populus trichocarpa HOM05D007159 ORTHO05D009068 1.6e-51 206.8 217 58.5
arahy.Tifrunner.gnm1.ann1.XLH660 Arachis hypogaea HOM05D007159 ORTHO05D009068 2.1e-51 206.5 127 77.2
Thecc.10G133500 Theobroma cacao HOM05D007159 ORTHO05D009068 3.5e-51 205.7 144 70.1
Manes.11G009800 Manihot esculenta HOM05D007159 ORTHO05D009068 4.6e-51 205.3 213 58.7
Lj3g0023531 Lotus japonicus HOM05D007159 ORTHO05D009068 1.0e-50 204.1 175 60.6
Gohir.A10G191800 Gossypium hirsutum HOM05D007159 ORTHO05D009068 2.3e-50 203.0 145 72.4
SalBow5G2583 Salvia bowleyana HOM05D007159 ORTHO05D009068 2.3e-50 203.0 127 77.2
RcHm_v2.0_Chr3g0462781 Rosa chinensis HOM05D007159 ORTHO05D009068 3.0e-50 202.6 203 56.7
Eucgr.G03186 Eucalyptus grandis HOM05D007159 ORTHO05D009068 8.7e-50 201.1 157 66.9
Medtr3g011770 Medicago truncatula HOM05D007159 ORTHO05D009068 8.7e-50 201.1 158 65.8
Actinidia35758 Actinidia chinensis HOM05D007159 ORTHO05D009068 1.5e-49 200.3 199 57.3
Gorai.011G223700 Gossypium raimondii HOM05D007159 ORTHO05D009068 2.5e-49 199.5 145 71.0
PGSC0003DMG402002094 Solanum tuberosum HOM05D007159 ORTHO05D009068 2.5e-49 199.5 153 66.0
Glyma.04G126100 Glycine max HOM05D007159 ORTHO05D009068 3.3e-49 199.1 174 62.1
FvH4_6g11251 Fragaria vesca HOM05D007159 ORTHO05D009068 4.3e-49 198.7 168 63.1
FAN14G5227 Fragaria x ananassa HOM05D007159 ORTHO05D009068 4.3e-49 198.7 168 63.1
SGA_v2.0_scaffold141G35535 Striga asiatica HOM05D007159 ORTHO05D009068 4.3e-49 198.7 188 58.0
PSO339G3610 Papaver somniferum HOM05D007159 ORTHO05D009068 7.3e-49 198.0 160 63.8
FAN02G0787 Fragaria x ananassa HOM05D007159 ORTHO05D009068 9.6e-49 197.6 171 60.8
Migut.B01174 Erythranthe guttata HOM05D007159 ORTHO05D009068 1.3e-48 197.2 202 55.4
Gohir.D10G199566 Gossypium hirsutum HOM05D007159 ORTHO05D009068 1.3e-48 197.2 124 79.0
PGR031G3393 Punica granatum HOM05D007159 ORTHO05D009068 1.3e-48 197.2 200 58.0
FAN14G2984 Fragaria x ananassa HOM05D007159 ORTHO05D009068 2.1e-48 196.4 168 62.5
Lalb_Chr18g0048161 Lupinus albus HOM05D007159 ORTHO05D009068 2.1e-48 196.4 146 67.8
TPR.G30403 Trifolium pratense HOM05D007159 ORTHO05D009068 2.1e-48 196.4 175 61.7
TWI63G1065 Tripterygium wilfordii HOM05D007159 ORTHO05D009068 2.1e-48 196.4 172 59.3
MSTRG.20491 Avicennia marina HOM05D007159 ORTHO05D009068 3.6e-48 195.7 168 61.9
VMungo1080G1031 Vigna mungo HOM05D007159 ORTHO05D009068 3.6e-48 195.7 125 75.2
ATR0598G156 Amborella trichopoda HOM05D007159 ORTHO05D009068 6.2e-48 194.9 201 54.2
Phvul.005G013300 Phaseolus vulgaris HOM05D007159 ORTHO05D009068 6.2e-48 194.9 173 60.7
Psat5g224840 Pisum sativum HOM05D007159 ORTHO05D009068 1.1e-47 194.1 125 74.4
Sopen06g021330 Solanum pennellii HOM05D007159 ORTHO05D009068 1.4e-47 193.7 153 64.1
AUR62035525 Chenopodium quinoa HOM05D007159 ORTHO05D009068 2.4e-47 193.0 162 64.2
Cc00_g21840 Coffea canephora HOM05D007159 ORTHO05D009068 3.1e-47 192.6 210 51.4
Hund06845 Selenicereus undatus HOM05D007159 ORTHO05D009068 3.1e-47 192.6 154 63.6
Solyc06g061130.4 Solanum lycopersicum HOM05D007159 ORTHO05D009068 3.1e-47 192.6 202 54.5
TAR623G0509 Trochodendron aralioides HOM05D007159 ORTHO05D009068 3.1e-47 192.6 189 57.1
Zm00001eb314250 Zea mays HOM05D007159 ORTHO05D009068 3.1e-47 192.6 187 57.2
Rhsim08G0052600 Rhododendron simsii HOM05D007159 ORTHO05D009068 9.0e-47 191.0 183 58.5
Nn2g14588 Nelumbo nucifera HOM05D007159 ORTHO05D009068 2.0e-46 189.9 184 55.4
Aqoxy1G00016 Aquilegia oxysepala HOM05D007159 ORTHO05D009068 4.5e-46 188.7 125 72.8
EL10Ac4g08838 Beta vulgaris HOM05D007159 ORTHO05D009068 3.2e-44 182.6 115 78.3
Nitab4.5_0006066g0020 Nicotiana tabacum HOM05D007159 ORTHO05D009068 4.2e-44 182.2 132 65.9
HPP92_004369 Vanilla planifolia HOM05D007159 ORTHO05D009068 5.4e-44 181.8 169 58.0
Nitab4.5_0000256g0440 Nicotiana tabacum HOM05D007159 ORTHO05D009068 9.3e-44 181.0 144 62.5
SEGI_36712 Sequoiadendron giganteum HOM05D007159 ORTHO05D009068 2.1e-43 179.9 171 57.9
ClCG11G012910 Citrullus lanatus HOM05D007159 ORTHO05D009068 3.5e-43 179.1 120 73.3
Lsat_1_v5_gn_7_31321 Lactuca sativa HOM05D007159 ORTHO05D009068 1.3e-42 177.2 117 70.9
CsaV3_5G029340 Cucumis sativus L. HOM05D007159 ORTHO05D009068 2.1e-40 169.9 188 53.2
AagrBONN_evm.TU.Sc2ySwM_344.1718 Anthoceros agrestis HOM05D007159 ORTHO05D009068 1.2e-38 164.1 155 54.8
Mapoly0102s0032 Marchantia polymorpha HOM05D007159 ORTHO05D009068 2.9e-37 159.5 167 52.7
HanXRQChr15g0480981 Helianthus annuus HOM05D007159 ORTHO05D009068 3.8e-37 159.1 132 61.4
ECA236G3649 Erigeron canadensis HOM05D007159 ORTHO05D009068 4.9e-37 158.7 133 60.2
arahy.Tifrunner.gnm1.ann1.T46YUH Arachis hypogaea HOM05D007159 ORTHO05D009068 1.9e-36 156.8 134 59.0
Peaxi162Scf00615g00514 Petunia axillaris HOM05D007159 ORTHO05D009068 3.5e-35 152.5 92 81.5
SMO137G0134 Selaginella moellendorffii HOM05D007159 ORTHO05D009068 3.5e-35 152.5 124 59.7
Ah.06g191300 Amaranthus hybridus HOM05D007159 ORTHO05D009068 1.8e-34 150.2 156 54.5
Dinv23933 Davidia involucrata HOM05D007159 ORTHO05D009068 2.3e-34 149.8 108 67.6
Actinidia39400 Actinidia chinensis HOM05D007159 ORTHO05D009068 6.7e-34 148.3 132 62.1
DCAR_001925 Daucus carota HOM05D007159 ORTHO05D009068 1.5e-33 147.1 115 61.7
GSVIVG01012423001 Vitis vinifera HOM05D007159 ORTHO05D009068 4.8e-32 142.1 83 85.5
Aa31sc19G60 Aethionema arabicum HOM05D007159 ORTHO05D009068 5.3e-31 138.7 83 80.7
CBR_g8263 Chara braunii HOM05D007159 ORTHO05D009068 5.3e-31 138.7 127 54.3
Sc09g0004690 Simmondsia chinensis HOM05D007159 ORTHO05D009068 5.3e-31 138.7 92 75.0
AUR62041642 Chenopodium quinoa HOM05D007159 ORTHO05D009068 1.2e-30 137.5 124 60.5
GSVIVG01012347001 Vitis vinifera HOM05D007159 ORTHO05D009068 5.8e-30 135.2 94 73.4
MELO3C034053.2 Cucumis melo HOM05D007159 ORTHO05D009068 7.6e-30 134.8 101 71.3
Prupe.2G049700 Prunus persica HOM05D007159 ORTHO05D009068 1.0e-26 124.4 104 62.5
FAN05G1155 Fragaria x ananassa HOM05D007159 ORTHO05D009068 1.3e-26 124.0 217 41.9
GSVIVG01012437001 Vitis vinifera HOM05D007159 ORTHO05D009068 8.7e-26 121.3 166 48.2
Oeu058665.1 Olea europaea HOM05D007159 ORTHO05D009068 4.3e-25 119.0 69 81.2
Sed0014969 Sechium edule HOM05D007159 ORTHO05D009068 3.7e-24 115.9 115 57.4
unitig_749.g13795 Utricularia gibba HOM05D007159 ORTHO05D009068 5.9e-22 108.6 80 65.0
QL04p022306 Quercus lobata HOM05D007159 ORTHO05D009068 8.5e-21 104.8 92 60.9
FAN09G0838 Fragaria x ananassa HOM05D007159 ORTHO05D009068 1.0e-18 97.8 196 40.3
Atru.chr12.1193 Acer truncatum HOM05D007159 ORTHO05D009068 6.3e-16 88.6 49 85.7
CANSAT78G1490 Cannabis sativa HOM05D007159 ORTHO05D009068 8.2e-16 88.2 128 43.0
Sed0016161 Sechium edule HOM05D007159 ORTHO05D009068 1.1e-15 87.8 70 64.3
Glyma.06G312500 Glycine max HOM05D007159 ORTHO05D009068 1.5e-14 84.0 64 64.1
Haze_02958 Corylus avellana HOM05D007159 ORTHO05D009068 5.0e-13 79.0 40 92.5
PRCOL_00002415 Prasinoderma coloniale HOM05D007159 ORTHO05D009068 1.1e-12 77.8 124 41.1
MCO13G186 Micromonas commoda HOM05D007159 ORTHO05D009068 5.5e-12 75.5 123 35.8
Os04g0600100 Oryza sativa ssp. japonica HOM05D009116 ORTHO05D011299 3.9e-10 69.3 118 33.9
Rhsim03G0219300 Rhododendron simsii HOM05D009116 ORTHO05D011299 6.7e-10 68.6 198 30.8
COL.COLO4_34141 Corchorus olitorius HOM05D009116 ORTHO05D011299 1.5e-09 67.4 196 28.1
Migut.F00112 Erythranthe guttata HOM05D009116 ORTHO05D011299 1.5e-09 67.4 179 28.5
unitig_52.g17699 Utricularia gibba HOM05D009116 ORTHO05D011299 2.0e-09 67.0 120 33.3
Ciclev10012634m.g Citrus clementina HOM05D009116 ORTHO05D011299 2.6e-09 66.6 189 28.6
Eucgr.H00677 Eucalyptus grandis HOM05D009116 ORTHO05D011299 4.4e-09 65.9 126 32.5
Nitab4.5_0003012g0090 Nicotiana tabacum HOM05D009116 ORTHO05D011299 7.4e-09 65.1 124 34.7
EL10Ac1g00288 Beta vulgaris HOM05D009116 ORTHO05D011299 9.7e-09 64.7 124 34.7
Nitab4.5_0000115g0230 Nicotiana tabacum HOM05D009116 ORTHO05D011299 9.7e-09 64.7 124 33.9
Hund27206 Selenicereus undatus HOM05D009116 ORTHO05D011299 1.3e-08 64.3 150 32.0
Mapoly0065s0044 Marchantia polymorpha HOM05D009116 ORTHO05D011299 2.2e-08 63.5 122 34.4
Oeu038114.2 Olea europaea HOM05D002675 ORTHO05D003322 2.2e-08 63.5 167 28.7
PGR031G3920 Punica granatum HOM05D009116 ORTHO05D011299 2.2e-08 63.5 126 32.5
CDE02G3635 Ceratophyllum demersum HOM05D009116 ORTHO05D011299 3.7e-08 62.8 116 33.6
Nn1g02040 Nelumbo nucifera HOM05D009116 ORTHO05D011299 3.1e-07 59.7 137 29.2
PGSC0003DMG400027028 Solanum tuberosum HOM05D009116 ORTHO05D011299 3.1e-07 59.7 124 32.3
MSTRG.26944 Avicennia marina HOM05D009116 ORTHO05D011299 5.3e-07 58.9 216 27.3
AagrBONN_evm.TU.Sc2ySwM_368.2113 Anthoceros agrestis HOM05D009116 ORTHO05D011299 7.0e-07 58.5 121 31.4
Sopen06g029290 Solanum pennellii HOM05D009116 ORTHO05D011299 7.0e-07 58.5 124 31.5
Solyc06g072930.4 Solanum lycopersicum HOM05D009116 ORTHO05D011299 9.1e-07 58.2 124 31.5
QL04p022221 Quercus lobata HOM05D000002 ORTHO05D000001 2.6e-06 56.6 88 46.6
CAN.G65.136 Capsicum annuum HOM05D009116 ORTHO05D011299 3.5e-06 56.2 208 28.4


User provided reference genes

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