Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g05620 Brassica carinata HOM05D006449 ORTHO05D007995 7.8e-64 246.9 119 100.0
C03p23890 Brassica napus HOM05D006449 ORTHO05D007995 7.8e-64 246.9 119 100.0
BolC3t14781H Brassica oleracea HOM05D006449 ORTHO05D007995 7.8e-64 246.9 119 100.0
A03p20330 Brassica napus HOM05D006449 ORTHO05D007995 2.3e-63 245.4 119 99.2
BraA03t11279Z Brassica rapa HOM05D006449 ORTHO05D007995 2.3e-63 245.4 119 99.2
BcaB02g09320 Brassica carinata HOM05D006449 ORTHO05D007995 5.6e-62 240.7 119 96.6
BcaC02g11815 Brassica carinata HOM05D006449 ORTHO05D007995 5.6e-62 240.7 119 96.6
BcaB01g03807 Brassica carinata HOM05D006449 ORTHO05D007995 3.6e-61 238.0 119 95.8
A05p08950 Brassica napus HOM05D006449 ORTHO05D007995 6.2e-61 237.3 119 95.0
C04p11060 Brassica napus HOM05D006449 ORTHO05D007995 6.2e-61 237.3 119 95.0
BolC4t22754H Brassica oleracea HOM05D006449 ORTHO05D007995 6.2e-61 237.3 119 95.0
BraA05t19857Z Brassica rapa HOM05D006449 ORTHO05D007995 6.2e-61 237.3 119 95.0
Thhalv10017435m.g Eutrema salsugineum HOM05D006449 ORTHO05D007995 8.9e-60 233.4 118 94.1
Sp4g19220 Schrenkiella parvula HOM05D006449 ORTHO05D007995 4.4e-59 231.1 119 93.3
Carub.0004s1878 Capsella rubella HOM05D006449 ORTHO05D007995 5.8e-59 230.7 119 92.4
AL4G33170 Arabidopsis lyrata HOM05D006449 ORTHO05D007995 2.9e-58 228.4 119 90.8
CARHR131400 Cardamine hirsuta HOM05D006449 ORTHO05D007995 9.3e-57 223.4 119 87.4
AT2G36930 Arabidopsis thaliana HOM05D006449 ORTHO05D007995 1.6e-56 222.6 117 89.7
Nn2g13802 Nelumbo nucifera HOM05D006449 ORTHO05D007995 8.4e-50 200.3 116 80.2
THA.LOC104823475 Tarenaya hassleriana HOM05D006449 ORTHO05D007995 3.2e-49 198.4 117 79.5
Gorai.002G246900 Gossypium raimondii HOM05D006449 ORTHO05D007995 5.4e-49 197.6 116 77.6
Gohir.A01G213500 Gossypium hirsutum HOM05D006449 ORTHO05D007995 7.1e-49 197.2 115 78.3
CSS0028691 Camellia sinensis var. sinensis HOM05D006449 ORTHO05D007995 2.1e-48 195.7 116 75.9
Manes.09G065800 Manihot esculenta HOM05D006449 ORTHO05D007995 2.1e-48 195.7 116 77.6
Glyma.13G142300 Glycine max HOM05D006449 ORTHO05D007995 6.0e-48 194.1 116 75.9
TWI74G0214 Tripterygium wilfordii HOM05D006449 ORTHO05D007995 7.9e-48 193.7 117 75.2
TWI77G0881 Tripterygium wilfordii HOM05D006449 ORTHO05D007995 1.0e-47 193.4 117 75.2
Aa31LG5G22150 Aethionema arabicum HOM05D006449 ORTHO05D007995 1.3e-47 193.0 117 82.1
AUR62040339 Chenopodium quinoa HOM05D006449 ORTHO05D007995 1.3e-47 193.0 116 75.0
AUR62042508 Chenopodium quinoa HOM05D006449 ORTHO05D007995 1.7e-47 192.6 116 75.0
Gohir.D01G202200 Gossypium hirsutum HOM05D006449 ORTHO05D007995 1.7e-47 192.6 116 75.9
Hma1.2p1_0205F.1_g086990 Hydrangea macrophylla HOM05D006449 ORTHO05D007995 2.3e-47 192.2 116 77.6
Aqoxy1G01150 Aquilegia oxysepala HOM05D006449 ORTHO05D007995 3.9e-47 191.4 116 75.9
Glyma.10G055200 Glycine max HOM05D006449 ORTHO05D007995 3.9e-47 191.4 116 74.1
Thecc.05G067500 Theobroma cacao HOM05D006449 ORTHO05D007995 3.9e-47 191.4 116 75.0
DCAR_015000 Daucus carota HOM05D006449 ORTHO05D007995 1.1e-46 189.9 117 75.2
VMungo0720G3134 Vigna mungo HOM05D006449 ORTHO05D007995 1.1e-46 189.9 116 75.0
CsaV3_6G039970 Cucumis sativus L. HOM05D006449 ORTHO05D007995 1.5e-46 189.5 116 75.9
Nn6g35286 Nelumbo nucifera HOM05D006449 ORTHO05D007995 1.5e-46 189.5 116 74.1
CiPaw.10G129500 Carya illinoinensis HOM05D006449 ORTHO05D007995 1.9e-46 189.1 118 73.7
Duzib093G0849 Durio zibethinus HOM05D006449 ORTHO05D007995 2.5e-46 188.7 115 74.8
Actinidia08770 Actinidia chinensis HOM05D006449 ORTHO05D007995 4.3e-46 188.0 116 73.3
ClCG04G009390 Citrullus lanatus HOM05D006449 ORTHO05D007995 4.3e-46 188.0 116 75.0
Nitab4.5_0000814g0040 Nicotiana tabacum HOM05D006449 ORTHO05D007995 4.3e-46 188.0 116 73.3
Phvul.007G219000 Phaseolus vulgaris HOM05D006449 ORTHO05D007995 5.6e-46 187.6 116 72.4
Ca_11505_v3 Cicer arietinum L. HOM05D006449 ORTHO05D007995 7.3e-46 187.2 116 75.9
Medtr1g063190 Medicago truncatula HOM05D006449 ORTHO05D007995 9.6e-46 186.8 116 73.3
Psat6g074040 Pisum sativum HOM05D006449 ORTHO05D007995 9.6e-46 186.8 116 73.3
PGR004G0793 Punica granatum HOM05D006449 ORTHO05D007995 9.6e-46 186.8 116 75.0
Atru.chr8.1798 Acer truncatum HOM05D006449 ORTHO05D007995 1.3e-45 186.4 119 73.1
Nitab4.5_0003861g0010 Nicotiana tabacum HOM05D006449 ORTHO05D007995 1.6e-45 186.0 116 73.3
Sed0015731 Sechium edule HOM05D006449 ORTHO05D007995 2.8e-45 185.3 116 72.4
MSTRG.5764 Avicennia marina HOM05D006449 ORTHO05D007995 3.6e-45 184.9 116 71.6
EL10Ac7g16636 Beta vulgaris HOM05D006449 ORTHO05D007995 3.6e-45 184.9 116 72.4
HanXRQChr15g0491571 Helianthus annuus HOM05D006449 ORTHO05D007995 3.6e-45 184.9 116 73.3
Lj5g0001377 Lotus japonicus HOM05D006449 ORTHO05D007995 4.8e-45 184.5 116 74.1
Solyc09g008230.3 Solanum lycopersicum HOM05D006449 ORTHO05D007995 6.2e-45 184.1 116 73.3
Sopen09g003050 Solanum pennellii HOM05D006449 ORTHO05D007995 6.2e-45 184.1 116 73.3
PGSC0003DMG400003863 Solanum tuberosum HOM05D006449 ORTHO05D007995 1.1e-44 183.3 116 72.4
Peaxi162Scf00311g00119 Petunia axillaris HOM05D006449 ORTHO05D007995 1.4e-44 183.0 116 72.4
CDE09G0874 Ceratophyllum demersum HOM05D006449 ORTHO05D007995 3.1e-44 181.8 118 73.7
TPR.G11267 Trifolium pratense HOM05D006449 ORTHO05D007995 4.0e-44 181.4 116 69.8
CAN.G900.29 Capsicum annuum HOM05D006449 ORTHO05D007995 6.9e-44 180.6 116 70.7
Hund26578 Selenicereus undatus HOM05D006449 ORTHO05D007995 1.2e-43 179.9 118 71.2
SEGI_04945 Sequoiadendron giganteum HOM05D006449 ORTHO05D007995 1.5e-43 179.5 114 72.8
GSVIVG01033644001 Vitis vinifera HOM05D006449 ORTHO05D007995 1.5e-43 179.5 117 72.6
Potri.016G093500 Populus trichocarpa HOM05D006449 ORTHO05D007995 2.6e-43 178.7 119 73.9
Hund20380 Selenicereus undatus HOM05D006449 ORTHO05D007995 7.6e-43 177.2 118 70.3
ECA248G0052 Erigeron canadensis HOM05D006449 ORTHO05D007995 1.7e-42 176.0 116 70.7
Peaxi162Scf00638g00414 Petunia axillaris HOM05D006449 ORTHO05D007995 2.2e-42 175.6 116 71.6
Sabra16G0098600 Salix brachista HOM05D006449 ORTHO05D007995 2.2e-42 175.6 119 71.4
Oeu041490.2 Olea europaea HOM05D006449 ORTHO05D007995 6.4e-42 174.1 123 68.3
Zm00001eb038700 Zea mays HOM05D006449 ORTHO05D007995 8.4e-42 173.7 121 67.8
Lsat_1_v5_gn_1_52340 Lactuca sativa HOM05D006449 ORTHO05D007995 9.3e-41 170.2 116 71.6
FvH4_6g16440 Fragaria vesca HOM05D006449 ORTHO05D007995 1.6e-40 169.5 118 70.3
FAN05G0981 Fragaria x ananassa HOM05D006449 ORTHO05D007995 1.6e-40 169.5 118 70.3
FAN14G2797 Fragaria x ananassa HOM05D006449 ORTHO05D007995 1.6e-40 169.5 118 70.3
FAN14G3008 Fragaria x ananassa HOM05D006449 ORTHO05D007995 1.6e-40 169.5 118 70.3
Os08g0564500 Oryza sativa ssp. japonica HOM05D006449 ORTHO05D007995 1.6e-40 169.5 121 66.9
Mapoly0185s0018 Marchantia polymorpha HOM05D006449 ORTHO05D007995 6.0e-40 167.5 116 69.8
FAN02G2429 Fragaria x ananassa HOM05D006449 ORTHO05D007995 7.9e-40 167.2 118 69.5
RcHm_v2.0_Chr3g0470301 Rosa chinensis HOM05D006449 ORTHO05D007995 7.9e-40 167.2 118 69.5
CSS0018897 Camellia sinensis var. sinensis HOM05D006449 ORTHO05D007995 1.0e-39 166.8 130 62.3
unitig_749.g14285 Utricularia gibba HOM05D006449 ORTHO05D007995 3.9e-39 164.9 116 67.2
Pp3c13_22060 Physcomitrium patens HOM05D006449 ORTHO05D007995 6.7e-39 164.1 116 64.7
HanXRQChr01g0027751 Helianthus annuus HOM05D006449 ORTHO05D007995 2.1e-37 159.1 89 77.5
PSO063G3287 Papaver somniferum HOM05D006449 ORTHO05D007995 1.1e-36 156.8 119 66.4
PSO339G4301 Papaver somniferum HOM05D006449 ORTHO05D007995 1.1e-36 156.8 119 66.4
COL.COLO4_26955 Corchorus olitorius HOM05D006449 ORTHO05D007995 5.3e-36 154.5 99 68.7
Lalb_Chr02g0155801 Lupinus albus HOM05D006449 ORTHO05D007995 2.6e-35 152.1 87 74.7
SGA_v2.0_scaffold75G24848 Striga asiatica HOM05D006449 ORTHO05D007995 5.8e-35 151.0 114 61.4
MELO3C024474.2 Cucumis melo HOM05D006449 ORTHO05D007995 1.0e-34 150.2 87 74.7
QL07p043219 Quercus lobata HOM05D006449 ORTHO05D007995 2.2e-34 149.1 87 72.4
ATR0219G007 Amborella trichopoda HOM05D006449 ORTHO05D007995 3.8e-34 148.3 87 74.7
SGA_v2.0_scaffold40G15520 Striga asiatica HOM05D006449 ORTHO05D007995 3.8e-34 148.3 89 71.9
Rhsim03G0091200 Rhododendron simsii HOM05D006449 ORTHO05D007995 8.4e-34 147.1 89 71.9
MD12G1112600 Malus domestica HOM05D006449 ORTHO05D007995 1.1e-33 146.7 87 75.9
Sabra06G0098200 Salix brachista HOM05D006449 ORTHO05D007995 3.2e-33 145.2 99 69.7
Cfa017617 Carpinus fangiana HOM05D006449 ORTHO05D007995 7.1e-33 144.1 128 58.6
CANSAT80G0535 Cannabis sativa HOM05D006449 ORTHO05D007995 9.3e-33 143.7 87 72.4
MD00G1155400 Malus domestica HOM05D006449 ORTHO05D007995 1.6e-32 142.9 87 73.6
Cc06_g04250 Coffea canephora HOM05D006449 ORTHO05D007995 1.8e-31 139.4 78 78.2
HPP92_025806 Vanilla planifolia HOM05D006449 ORTHO05D007995 3.3e-30 135.2 89 67.4
Migut.J00654 Erythranthe guttata HOM05D006449 ORTHO05D007995 6.2e-29 131.0 84 70.2
arahy.Tifrunner.gnm1.ann1.9GBJ25 Arachis hypogaea HOM05D006449 ORTHO05D007995 8.2e-29 130.6 84 71.4
arahy.Tifrunner.gnm1.ann1.D9FX9P Arachis hypogaea HOM05D006449 ORTHO05D007995 8.2e-29 130.6 84 71.4
Nitab4.5_0029554g0010 Nicotiana tabacum HOM05D006449 ORTHO05D007995 1.4e-28 129.8 84 69.0
Ciclev10013228m.g Citrus clementina HOM05D006449 ORTHO05D007995 1.8e-28 129.4 85 69.4
Sc20g0005520 Simmondsia chinensis HOM05D006449 ORTHO05D007995 2.0e-27 125.9 84 66.7
Potri.006G124100 Populus trichocarpa HOM05D006449 ORTHO05D007995 2.6e-27 125.6 72 76.4
SMO144G0185 Selaginella moellendorffii HOM05D006449 ORTHO05D007995 4.5e-27 124.8 89 64.0
vmacro07293 Vaccinium macrocarpon HOM05D006449 ORTHO05D007995 1.0e-26 123.6 96 61.5
Manes.08G011000 Manihot esculenta HOM05D006449 ORTHO05D007995 1.1e-25 120.2 96 62.5
Haze_20546 Corylus avellana HOM05D006449 ORTHO05D007995 4.2e-25 118.2 98 58.2
Oeu005023.1 Olea europaea HOM05D006449 ORTHO05D007995 7.2e-25 117.5 99 58.6
Prupe.7G129700 Prunus persica HOM05D006449 ORTHO05D007995 5.0e-18 94.7 63 68.3
PRCOL_00003735 Prasinoderma coloniale HOM05D006449 ORTHO05D007995 7.2e-17 90.9 110 44.5
TAR633G1413 Trochodendron aralioides HOM05D002509 ORTHO05D002758 7.2e-17 90.9 53 75.5
Cre17.g734628 Chlamydomonas reinhardtii HOM05D006449 ORTHO05D007995 7.9e-16 87.4 132 39.4
MCO09G543 Micromonas commoda HOM05D006449 ORTHO05D007995 2.3e-15 85.9 150 37.3
CBR_g8310 Chara braunii HOM05D006449 ORTHO05D007995 3.0e-15 85.5 116 41.4
Lj3A986G82 Lonicera japonica HOM05D006449 ORTHO05D007995 3.7e-13 78.6 116 42.2
Thhalv10009663m.g Eutrema salsugineum HOM05D005081 ORTHO05D005506 2.5e-09 65.9 33 90.9
MSTRG.19181 Avicennia marina HOM05D006449 ORTHO05D007995 1.4e-07 60.1 32 84.4
HanXRQChr16g0526221 Helianthus annuus HOM05D006449 ORTHO05D007995 5.1e-07 58.2 30 73.3


User provided reference genes

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