Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p23720 Brassica napus HOM05D007554 ORTHO05D009569 6.7e-155 550.8 316 100.0
BcaC01g05644 Brassica carinata HOM05D007554 ORTHO05D009569 5.3e-152 541.2 316 98.4
BolC3t14766H Brassica oleracea HOM05D007554 ORTHO05D009569 1.7e-150 536.2 317 96.2
BcaB01g03819 Brassica carinata HOM05D007554 ORTHO05D009569 2.4e-112 409.5 318 79.2
BraA03t11273Z Brassica rapa HOM05D007554 ORTHO05D009569 2.8e-108 396.0 308 76.3
A03p20230 Brassica napus HOM05D007554 ORTHO05D009569 1.9e-104 383.3 333 70.9
Thhalv10017640m.g Eutrema salsugineum HOM05D007554 ORTHO05D009569 3.1e-83 312.8 303 62.4
AL4G32830 Arabidopsis lyrata HOM05D007554 ORTHO05D009569 1.4e-75 287.3 302 60.6
A05p09220 Brassica napus HOM05D007554 ORTHO05D009569 2.4e-75 286.6 303 64.7
BraA05t19878Z Brassica rapa HOM05D007554 ORTHO05D009569 1.7e-73 280.4 303 64.7
Sp4g18930 Schrenkiella parvula HOM05D007554 ORTHO05D009569 2.9e-73 279.6 303 58.1
AT2G36650 Arabidopsis thaliana HOM05D007554 ORTHO05D009569 7.1e-72 275.0 303 62.7
BcaC02g11778 Brassica carinata HOM05D007554 ORTHO05D009569 1.2e-71 274.2 301 62.5
C04p11490 Brassica napus HOM05D007554 ORTHO05D009569 1.2e-71 274.2 301 62.5
BolC4t22799H Brassica oleracea HOM05D007554 ORTHO05D009569 1.2e-71 274.2 301 62.5
BcaB02g09343 Brassica carinata HOM05D007554 ORTHO05D009569 7.9e-71 271.6 303 63.0
CARHR130930 Cardamine hirsuta HOM05D007554 ORTHO05D009569 1.0e-70 271.2 302 58.6
Carub.0004s1847 Capsella rubella HOM05D007554 ORTHO05D009569 5.1e-70 268.9 306 54.2
Aa31LG5G21850 Aethionema arabicum HOM05D007554 ORTHO05D009569 1.0e-49 201.4 297 50.2
THA.LOC104823478 Tarenaya hassleriana HOM05D007554 ORTHO05D009569 5.7e-37 159.1 303 37.6
Atru.chr8.1675 Acer truncatum HOM05D007554 ORTHO05D009569 3.8e-25 119.8 326 31.6
FAN05G0950 Fragaria x ananassa HOM05D000031 ORTHO05D001864 1.1e-24 118.2 317 30.6
FAN05G4577 Fragaria x ananassa HOM05D007554 ORTHO05D009569 1.1e-24 118.2 317 30.6
FAN09G2175 Fragaria x ananassa HOM05D000031 ORTHO05D001864 5.5e-24 115.9 317 30.0
FvH4_6g17340 Fragaria vesca HOM05D007554 ORTHO05D009569 9.4e-24 115.2 317 30.3
FAN05G5377 Fragaria x ananassa HOM05D007554 ORTHO05D009569 2.1e-23 114.0 317 30.0
CSS0026822 Camellia sinensis var. sinensis HOM05D007554 ORTHO05D009569 2.3e-22 110.5 332 28.3
CSS0026453 Camellia sinensis var. sinensis HOM05D007554 ORTHO05D009569 2.0e-21 107.5 332 27.4
Lsat_1_v5_gn_2_24301 Lactuca sativa HOM05D007554 ORTHO05D009569 7.5e-21 105.5 254 30.7
Lj2A125T59 Lonicera japonica HOM05D007554 ORTHO05D009569 9.8e-21 105.1 305 29.8
Manes.09G058083 Manihot esculenta HOM05D007554 ORTHO05D009569 1.3e-20 104.8 316 27.8
HanXRQChr06g0181651 Helianthus annuus HOM05D007554 ORTHO05D009569 6.3e-20 102.4 236 32.2
Gorai.006G159800 Gossypium raimondii HOM05D007554 ORTHO05D009569 1.1e-19 101.7 223 32.3
Gohir.D09G139300 Gossypium hirsutum HOM05D007554 ORTHO05D009569 1.4e-19 101.3 223 32.3
GSVIVG01033729001 Vitis vinifera HOM05D007554 ORTHO05D009569 1.8e-19 100.9 232 33.6
ECA238G1996 Erigeron canadensis HOM05D001775 ORTHO05D008700 5.4e-19 99.4 239 32.2
Thecc.05G076700 Theobroma cacao HOM05D007554 ORTHO05D009569 9.1e-19 98.6 319 27.3
Gohir.A09G143100 Gossypium hirsutum HOM05D007554 ORTHO05D009569 1.6e-18 97.8 225 31.1
Prupe.7G122100 Prunus persica HOM05D007554 ORTHO05D009569 2.0e-18 97.4 322 26.4
TAR623G1240 Trochodendron aralioides HOM05D007554 ORTHO05D009569 2.0e-18 97.4 229 31.0
Cpa.g.sc5.117 Carica papaya HOM05D007554 ORTHO05D009569 2.7e-18 97.1 317 25.9
Duzib106G2002 Durio zibethinus HOM05D007554 ORTHO05D009569 3.5e-18 96.7 312 27.2
Medtr1g061840 Medicago truncatula HOM05D007554 ORTHO05D009569 4.5e-18 96.3 323 25.1
COL.COLO4_22265 Corchorus olitorius HOM05D007554 ORTHO05D008700 5.9e-18 95.9 323 25.7
PGR142G2625 Punica granatum HOM05D007554 ORTHO05D009569 1.0e-17 95.1 298 27.9
QL07p041193 Quercus lobata HOM05D007554 ORTHO05D009569 1.0e-17 95.1 227 30.4
Peaxi162Scf01063g00111 Petunia axillaris HOM05D007554 ORTHO05D009569 1.3e-17 94.7 232 28.4
PGSC0003DMG401012981 Solanum tuberosum HOM05D007554 ORTHO05D009569 6.5e-17 92.4 225 28.9
RcHm_v2.0_Chr3g0471481 Rosa chinensis HOM05D007554 ORTHO05D009569 1.1e-16 91.7 312 28.2
Ciclev10011754m.g Citrus clementina HOM05D007554 ORTHO05D009569 2.5e-16 90.5 332 26.5
CiPaw.09G006000 Carya illinoinensis HOM05D007554 ORTHO05D009569 4.2e-16 89.7 242 27.3
Potri.005G098400 Populus trichocarpa HOM05D007554 ORTHO05D009569 7.2e-16 89.0 249 26.5
Eucgr.K02413 Eucalyptus grandis HOM05D007554 ORTHO05D009569 9.4e-16 88.6 332 27.1
MD12G1101400 Malus domestica HOM05D007554 ORTHO05D009569 1.6e-15 87.8 236 30.5
Glyma.03G188800 Glycine max HOM05D007554 ORTHO05D009569 2.1e-15 87.4 303 27.4
vmacro08807 Vaccinium macrocarpon HOM05D007554 ORTHO05D009569 2.7e-15 87.0 333 27.0
Cc06_g04860 Coffea canephora HOM05D007554 ORTHO05D009569 1.4e-14 84.7 322 23.3
Solyc09g008660.3 Solanum lycopersicum HOM05D007554 ORTHO05D009569 1.4e-14 84.7 211 29.9
FAN14G0141 Fragaria x ananassa HOM05D000031 ORTHO05D001864 1.8e-14 84.3 222 31.5
Sed0015840 Sechium edule HOM05D000031 ORTHO05D001864 5.2e-14 82.8 178 32.6
TWI74G1006 Tripterygium wilfordii HOM05D007554 ORTHO05D009569 6.8e-14 82.4 225 27.1
Phvul.007G225500 Phaseolus vulgaris HOM05D007554 ORTHO05D009569 1.5e-13 81.3 278 27.0
Glyma.10G063900 Glycine max HOM05D007554 ORTHO05D009569 5.7e-13 79.3 247 26.3
CAN.G1830.10 Capsicum annuum HOM05D007554 ORTHO05D009569 2.8e-12 77.0 206 30.6
DCAR_015020 Daucus carota HOM05D007554 ORTHO05D009569 2.8e-12 77.0 315 24.1
Glyma.13G148500 Glycine max HOM05D007554 ORTHO05D009569 4.9e-12 76.3 259 26.3
Ca_11566_v3 Cicer arietinum L. HOM05D007554 ORTHO05D008700 6.3e-12 75.9 195 27.2
Psat0s3550g0120 Pisum sativum HOM05D007554 ORTHO05D009569 1.8e-11 74.3 244 26.2
Aqoxy2G01532 Aquilegia oxysepala HOM05D007554 ORTHO05D009569 2.4e-11 73.9 232 26.7
VMungo0720G0941 Vigna mungo HOM05D007554 ORTHO05D009569 2.4e-11 73.9 241 24.9
Cfa016496 Carpinus fangiana HOM05D001775 ORTHO05D008700 5.4e-11 72.8 224 29.0
Phvul.001G184200 Phaseolus vulgaris HOM05D007554 ORTHO05D009569 5.4e-11 72.8 321 23.7
CsaV3_3G036620 Cucumis sativus L. HOM05D007554 ORTHO05D009569 7.0e-11 72.4 196 29.1
MELO3C009416.2 Cucumis melo HOM05D007554 ORTHO05D009569 1.6e-10 71.2 177 29.9
TPR.G30363 Trifolium pratense HOM05D007554 ORTHO05D009569 1.6e-10 71.2 326 23.0
Lj1g0019279 Lotus japonicus HOM05D007554 ORTHO05D009569 2.0e-10 70.9 313 24.9
Sabra05G0080800 Salix brachista HOM05D007554 ORTHO05D009569 5.9e-10 69.3 245 24.9
BcaC02g11783 Brassica carinata HOM05D007554 ORTHO05D009569 1.0e-09 68.6 48 75.0
AUR62040182 Chenopodium quinoa HOM05D007554 ORTHO05D009569 1.3e-09 68.2 329 22.2
Nn2g13923 Nelumbo nucifera HOM05D007554 ORTHO05D009569 1.3e-09 68.2 213 28.6
Ah.15g091360 Amaranthus hybridus HOM05D007554 ORTHO05D009569 1.7e-09 67.8 226 27.4
Lj5g0018631 Lotus japonicus HOM05D007554 ORTHO05D009569 1.7e-09 67.8 231 26.0
AUR62044070 Chenopodium quinoa HOM05D007554 ORTHO05D009569 6.6e-09 65.9 303 22.8
arahy.Tifrunner.gnm1.ann1.WUL3RA Arachis hypogaea HOM05D007554 ORTHO05D009569 8.6e-09 65.5 223 27.4
ClCG10G019580 Citrullus lanatus HOM05D000031 ORTHO05D001864 8.6e-09 65.5 114 32.5
arahy.Tifrunner.gnm1.ann1.561HRF Arachis hypogaea HOM05D000566 ORTHO05D004798 4.2e-08 63.2 257 26.5
Glyma.19G189000 Glycine max HOM05D007554 ORTHO05D009569 4.2e-08 63.2 318 23.0
Sopen09g003460 Solanum pennellii HOM05D007554 ORTHO05D009569 4.2e-08 63.2 208 26.4
Ca_01174_v3 Cicer arietinum L. HOM05D000566 ORTHO05D004798 9.5e-08 62.0 242 28.5
Nitab4.5_0004281g0070 Nicotiana tabacum HOM05D007554 ORTHO05D009569 1.6e-07 61.2 222 25.2
Rhsim08G0228800 Rhododendron simsii HOM05D000566 ORTHO05D004798 2.8e-07 60.5 259 28.6
Nitab4.5_0006709g0010 Nicotiana tabacum HOM05D007554 ORTHO05D009569 4.7e-07 59.7 236 22.5
arahy.Tifrunner.gnm1.ann1.TQ9G2A Arachis hypogaea HOM05D007554 ORTHO05D009569 6.1e-07 59.3 220 27.3
Actinidia21725 Actinidia chinensis HOM05D000566 ORTHO05D004798 8.0e-07 58.9 255 25.9
arahy.Tifrunner.gnm1.ann1.YI8MDQ Arachis hypogaea HOM05D000566 ORTHO05D004798 1.8e-06 57.8 257 24.9
PSO339G0406 Papaver somniferum HOM05D007554 ORTHO05D009569 1.8e-06 57.8 160 25.0
Ah.01g005910 Amaranthus hybridus HOM05D000566 ORTHO05D004798 2.3e-06 57.4 229 27.5
DCAR_007592 Daucus carota HOM05D000566 ORTHO05D004798 3.0e-06 57.0 246 25.6
Dinv35842 Davidia involucrata HOM05D007554 ORTHO05D009569 3.0e-06 57.0 329 22.2
MSTRG.11016 Avicennia marina HOM05D000566 ORTHO05D004798 4.0e-06 56.6 254 24.8
Lsat_1_v5_gn_1_36681 Lactuca sativa HOM05D000566 ORTHO05D004798 4.0e-06 56.6 262 25.6
Lalb_Chr04g0263011 Lupinus albus HOM05D000566 ORTHO05D004798 4.0e-06 56.6 252 26.6
VMungo1383G1881 Vigna mungo HOM05D007554 ORTHO05D009569 4.0e-06 56.6 97 33.0
ATR0026G023 Amborella trichopoda HOM05D000566 ORTHO05D004798 6.8e-06 55.8 253 26.1
MSTRG.22623 Avicennia marina HOM05D000566 ORTHO05D004798 6.8e-06 55.8 237 25.3
MD09G1199900 Malus domestica HOM05D000566 ORTHO05D004798 6.8e-06 55.8 261 25.7
Sc07g0004650 Simmondsia chinensis HOM05D007554 ORTHO05D009569 6.8e-06 55.8 290 24.1
TPR.G6520 Trifolium pratense HOM05D000566 ORTHO05D004798 6.8e-06 55.8 248 25.4


User provided reference genes

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