Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p23590 Brassica napus HOM05D003485 ORTHO05D004004 1.3e-219 766.1 403 100.0
BolC3t14754H Brassica oleracea HOM05D003485 ORTHO05D004004 1.3e-219 766.1 403 100.0
BcaC01g05657 Brassica carinata HOM05D003485 ORTHO05D004004 3.5e-217 758.1 403 99.5
A03p20140 Brassica napus HOM05D003485 ORTHO05D004004 5.7e-207 724.2 404 95.5
BraA03t11264Z Brassica rapa HOM05D003485 ORTHO05D004004 9.6e-207 723.4 404 95.5
BcaB01g03837 Brassica carinata HOM05D003485 ORTHO05D004004 7.0e-181 637.5 426 81.2
Sp4g18720 Schrenkiella parvula HOM05D003485 ORTHO05D004004 5.4e-157 558.1 439 73.8
BcaB06g28940 Brassica carinata HOM05D003485 ORTHO05D004004 3.4e-151 538.9 432 73.4
BcaC02g07593 Brassica carinata HOM05D003485 ORTHO05D004004 1.8e-149 533.1 426 71.8
BolC4t28026H Brassica oleracea HOM05D003485 ORTHO05D004004 1.8e-149 533.1 426 71.8
BolC4t22814H Brassica oleracea HOM05D003485 ORTHO05D004004 5.0e-147 525.0 439 67.9
BraA04t18284Z Brassica rapa HOM05D003485 ORTHO05D004004 1.2e-145 520.4 427 70.0
BcaB02g09354 Brassica carinata HOM05D003485 ORTHO05D004004 4.0e-144 515.4 436 69.7
CARHR130720 Cardamine hirsuta HOM05D003485 ORTHO05D004004 4.0e-144 515.4 435 68.0
BcaC02g11759 Brassica carinata HOM05D003485 ORTHO05D004004 6.8e-144 514.6 446 67.7
BraA05t19893Z Brassica rapa HOM05D003485 ORTHO05D004004 2.4e-141 506.1 440 68.0
C04p11650 Brassica napus HOM05D003485 ORTHO05D004004 1.0e-139 500.7 438 66.9
AT2G36420 Arabidopsis thaliana HOM05D003485 ORTHO05D004004 3.7e-134 482.3 438 65.8
Carub.0004s1823 Capsella rubella HOM05D003485 ORTHO05D004004 6.6e-131 471.5 454 63.2
AL4G32600 Arabidopsis lyrata HOM05D003485 ORTHO05D004004 1.1e-130 470.7 443 63.0
A05p09350 Brassica napus HOM05D003485 ORTHO05D004004 5.2e-128 461.8 440 63.6
A04p27950 Brassica napus HOM05D003485 ORTHO05D004004 2.4e-72 276.9 207 74.4
Aa31LG5G21610 Aethionema arabicum HOM05D003485 ORTHO05D004004 1.6e-68 264.2 427 45.0
THA.LOC104805079 Tarenaya hassleriana HOM05D003485 ORTHO05D004004 1.7e-57 227.6 467 40.9
THA.LOC104823464 Tarenaya hassleriana HOM05D003485 ORTHO05D004004 1.5e-53 214.5 451 38.4
Sed0015592 Sechium edule HOM05D003485 ORTHO05D004004 8.6e-46 188.7 480 35.2
FvH4_6g18100 Fragaria vesca HOM05D003485 ORTHO05D004004 3.3e-45 186.8 529 31.9
Duzib093G1418 Durio zibethinus HOM05D003485 ORTHO05D004004 5.5e-45 186.0 540 33.1
FAN14G1728 Fragaria x ananassa HOM05D003485 ORTHO05D004004 7.2e-45 185.7 529 31.8
Sed0013820 Sechium edule HOM05D003485 ORTHO05D004004 2.8e-44 183.7 472 34.1
VMungo1383G1455 Vigna mungo HOM05D003485 ORTHO05D004004 2.8e-44 183.7 520 32.7
AL6G13180 Arabidopsis lyrata HOM05D003485 ORTHO05D004004 1.8e-43 181.0 537 35.4
A04p27940 Brassica napus HOM05D003485 ORTHO05D004004 3.0e-43 180.3 142 71.8
Haze_19558 Corylus avellana HOM05D003485 ORTHO05D004004 3.0e-43 180.3 535 32.1
Ciclev10011456m.g Citrus clementina HOM05D003485 ORTHO05D004004 4.0e-43 179.9 551 31.4
Glyma.03G192000 Glycine max HOM05D003485 ORTHO05D004004 3.4e-42 176.8 525 31.4
Cpa.g.sc5.65 Carica papaya HOM05D003485 ORTHO05D004004 7.5e-42 175.6 564 30.9
FAN05G0153 Fragaria x ananassa HOM05D003485 ORTHO05D004004 1.3e-41 174.9 529 31.4
FAN05G0444 Fragaria x ananassa HOM05D003485 ORTHO05D004004 1.3e-41 174.9 529 31.4
MELO3C024521.2 Cucumis melo HOM05D003485 ORTHO05D004004 1.7e-41 174.5 514 32.7
FAN09G2203 Fragaria x ananassa HOM05D003485 ORTHO05D004004 3.7e-41 173.3 527 31.1
THA.LOC104816367 Tarenaya hassleriana HOM05D003485 ORTHO05D004004 3.7e-41 173.3 539 33.2
CiPaw.09G009600 Carya illinoinensis HOM05D003485 ORTHO05D004004 4.9e-41 172.9 551 32.1
ClCG04G009820 Citrullus lanatus HOM05D003485 ORTHO05D004004 8.3e-41 172.2 512 32.4
CsaV3_6G040450 Cucumis sativus L. HOM05D003485 ORTHO05D004004 8.3e-41 172.2 512 32.8
Prupe.7G115800 Prunus persica HOM05D003485 ORTHO05D004004 1.1e-40 171.8 564 30.9
FAN02G1693 Fragaria x ananassa HOM05D003485 ORTHO05D004004 1.8e-40 171.0 530 31.1
AT5G03670 Arabidopsis thaliana HOM05D003485 ORTHO05D004004 2.4e-40 170.6 536 34.3
Glyma.19G192500 Glycine max HOM05D003485 ORTHO05D004004 2.4e-40 170.6 533 31.1
RcHm_v2.0_Chr3g0472371 Rosa chinensis HOM05D003485 ORTHO05D004004 4.1e-40 169.9 544 30.5
Gorai.006G157500 Gossypium raimondii HOM05D003485 ORTHO05D004004 5.4e-40 169.5 520 32.9
MD14G1017300 Malus domestica HOM05D003485 ORTHO05D004004 5.4e-40 169.5 531 32.2
Thhalv10016054m.g Eutrema salsugineum HOM05D003485 ORTHO05D004004 7.0e-40 169.1 532 33.1
C03p01670 Brassica napus HOM05D003485 ORTHO05D004004 1.2e-39 168.3 517 34.6
BolC3t12719H Brassica oleracea HOM05D003485 ORTHO05D004004 1.6e-39 167.9 517 34.6
BolC9t60060H Brassica oleracea HOM05D003485 ORTHO05D004004 2.0e-39 167.5 515 33.2
BcaB01g05795 Brassica carinata HOM05D003485 ORTHO05D004004 2.7e-39 167.2 517 34.4
Phvul.001G187300 Phaseolus vulgaris HOM05D003485 ORTHO05D004004 2.7e-39 167.2 519 31.0
QL07p040106 Quercus lobata HOM05D003485 ORTHO05D004004 2.7e-39 167.2 560 31.4
Cfa016557 Carpinus fangiana HOM05D003485 ORTHO05D004004 3.5e-39 166.8 539 32.5
Lj1g0007531 Lotus japonicus HOM05D003485 ORTHO05D004004 5.9e-39 166.0 535 30.5
Gohir.A09G136100 Gossypium hirsutum HOM05D003485 ORTHO05D004004 7.8e-39 165.6 518 32.4
A03p01320 Brassica napus HOM05D003485 ORTHO05D004004 1.3e-38 164.9 522 33.7
C09p73250 Brassica napus HOM05D003485 ORTHO05D004004 1.3e-38 164.9 510 33.3
Lj5g0007324 Lotus japonicus HOM05D003485 ORTHO05D004004 1.3e-38 164.9 518 30.3
MD12G1019500 Malus domestica HOM05D003485 ORTHO05D004004 1.3e-38 164.9 531 31.1
Manes.09G058764 Manihot esculenta HOM05D003485 ORTHO05D004004 1.3e-38 164.9 555 31.9
Sp6g39060 Schrenkiella parvula HOM05D003485 ORTHO05D004004 2.3e-38 164.1 535 32.1
Gohir.D09G137200 Gossypium hirsutum HOM05D003485 ORTHO05D004004 2.9e-38 163.7 528 32.2
BcaB01g05809 Brassica carinata HOM05D003485 ORTHO05D004004 3.8e-38 163.3 531 33.3
BraA03t09512Z Brassica rapa HOM05D003485 ORTHO05D004004 8.6e-38 162.2 522 33.9
SalBow3G3191 Salvia bowleyana HOM05D003485 ORTHO05D004004 1.9e-37 161.0 436 34.4
Aa31LG1G21550 Aethionema arabicum HOM05D003485 ORTHO05D004004 2.5e-37 160.6 499 33.3
BcaC06g32076 Brassica carinata HOM05D003485 ORTHO05D004004 3.3e-37 160.2 522 33.7
Thecc.05G083100 Theobroma cacao HOM05D003485 ORTHO05D004004 7.3e-37 159.1 539 32.3
TWI74G0849 Tripterygium wilfordii HOM05D003485 ORTHO05D004004 7.3e-37 159.1 565 30.1
arahy.Tifrunner.gnm1.ann1.FM4PU3 Arachis hypogaea HOM05D003485 ORTHO05D004004 1.2e-36 158.3 495 32.5
Gohir.A01G208100 Gossypium hirsutum HOM05D003485 ORTHO05D004004 1.2e-36 158.3 517 31.1
Phvul.007G222400 Phaseolus vulgaris HOM05D003485 ORTHO05D004004 1.2e-36 158.3 486 30.5
CiPaw.10G006300 Carya illinoinensis HOM05D003485 ORTHO05D004004 1.6e-36 157.9 565 30.1
Oeu032419.1 Olea europaea HOM05D003485 ORTHO05D004004 6.1e-36 156.0 479 29.9
Sed0026564 Sechium edule HOM05D003485 ORTHO05D004004 6.1e-36 156.0 449 32.5
Medtr1g060890 Medicago truncatula HOM05D003485 ORTHO05D004004 8.0e-36 155.6 544 29.0
MSTRG.5814 Avicennia marina HOM05D003485 ORTHO05D004004 1.4e-35 154.8 507 31.2
Duzib128G0159 Durio zibethinus HOM05D003485 ORTHO05D004004 1.4e-35 154.8 541 31.4
Solyc09g009220.4 Solanum lycopersicum HOM05D003485 ORTHO05D004004 1.4e-35 154.8 502 30.1
Duzib106G1512 Durio zibethinus HOM05D003485 ORTHO05D004004 1.8e-35 154.5 538 30.7
PGSC0003DMG400028260 Solanum tuberosum HOM05D003485 ORTHO05D004004 1.8e-35 154.5 438 32.9
Gorai.002G241600 Gossypium raimondii HOM05D003485 ORTHO05D004004 2.3e-35 154.1 518 30.5
Gohir.D01G197500 Gossypium hirsutum HOM05D003485 ORTHO05D004004 3.0e-35 153.7 517 30.8
Nitab4.5_0000132g0120 Nicotiana tabacum HOM05D003485 ORTHO05D004004 3.0e-35 153.7 442 32.6
MSTRG.26648 Avicennia marina HOM05D003485 ORTHO05D004004 6.8e-35 152.5 490 30.0
Nitab4.5_0003454g0060 Nicotiana tabacum HOM05D003485 ORTHO05D004004 6.8e-35 152.5 496 30.2
THA.LOC104826931 Tarenaya hassleriana HOM05D003485 ORTHO05D004004 1.2e-34 151.8 535 31.2
Glyma.10G067100 Glycine max HOM05D003485 ORTHO05D004004 2.0e-34 151.0 521 29.2
ClCG10G019240 Citrullus lanatus HOM05D003485 ORTHO05D004004 2.6e-34 150.6 477 31.7
PGSC0003DMG400002678 Solanum tuberosum HOM05D003485 ORTHO05D004004 2.6e-34 150.6 497 30.0
arahy.Tifrunner.gnm1.ann1.UZ5M1P Arachis hypogaea HOM05D003485 ORTHO05D004004 3.4e-34 150.2 494 32.0
TPR.G5671 Trifolium pratense HOM05D003485 ORTHO05D004004 4.4e-34 149.8 540 28.9
TWI77G0029 Tripterygium wilfordii HOM05D003485 ORTHO05D004004 9.8e-34 148.7 522 30.8
Sabra06G0090200 Salix brachista HOM05D003485 ORTHO05D004004 1.7e-33 147.9 554 28.5
Hma1.2p1_0084F.1_g043350 Hydrangea macrophylla HOM05D003485 ORTHO05D004004 2.2e-33 147.5 515 30.9
Lsat_1_v5_gn_2_20881 Lactuca sativa HOM05D003485 ORTHO05D004004 2.2e-33 147.5 502 30.7
Manes.08G022100 Manihot esculenta HOM05D003485 ORTHO05D004004 2.2e-33 147.5 545 29.4
GSVIVG01033797001 Vitis vinifera HOM05D003485 ORTHO05D004004 2.9e-33 147.1 462 32.9
Sopen10g033000 Solanum pennellii HOM05D003485 ORTHO05D004004 8.3e-33 145.6 419 32.9
TWI53G1381 Tripterygium wilfordii HOM05D003485 ORTHO05D004004 8.3e-33 145.6 560 29.8
A10p32430 Brassica napus HOM05D003485 ORTHO05D004004 1.1e-32 145.2 513 31.4
BraA10t45283Z Brassica rapa HOM05D003485 ORTHO05D004004 1.1e-32 145.2 513 31.4
Atru.chr8.1615 Acer truncatum HOM05D003485 ORTHO05D004004 1.8e-32 144.4 554 31.2
CsaV3_3G036950 Cucumis sativus L. HOM05D003485 ORTHO05D004004 1.8e-32 144.4 481 29.9
Oeu040530.1 Olea europaea HOM05D003485 ORTHO05D004004 1.8e-32 144.4 491 32.0
Potri.006G115300 Populus trichocarpa HOM05D003485 ORTHO05D004004 3.2e-32 143.7 560 29.8
PGR004G2186 Punica granatum HOM05D003485 ORTHO05D004004 4.1e-32 143.3 488 32.4
PGR142G1952 Punica granatum HOM05D003485 ORTHO05D004004 4.1e-32 143.3 521 30.3
MSTRG.10354 Avicennia marina HOM05D003485 ORTHO05D004004 7.0e-32 142.5 474 29.7
VMungo0720G2646 Vigna mungo HOM05D003485 ORTHO05D004004 7.0e-32 142.5 470 31.3
Glyma.13G152100 Glycine max HOM05D003485 ORTHO05D004004 4.6e-31 139.8 512 28.7
Sed0007624 Sechium edule HOM05D003485 ORTHO05D004004 4.6e-31 139.8 421 33.7
Peaxi162Scf00068g00085 Petunia axillaris HOM05D003485 ORTHO05D004004 3.0e-30 137.1 508 30.1
Solyc10g083530.2 Solanum lycopersicum HOM05D003485 ORTHO05D004004 3.0e-30 137.1 424 32.3
CSS0002533 Camellia sinensis var. sinensis HOM05D003485 ORTHO05D004004 1.1e-29 135.2 507 30.6
TAR369G0025 Trochodendron aralioides HOM05D003485 ORTHO05D004004 1.9e-29 134.4 521 29.8
DCAR_013367 Daucus carota HOM05D003485 ORTHO05D004004 2.5e-29 134.0 485 30.7
Lsat_1_v5_gn_1_48761 Lactuca sativa HOM05D003485 ORTHO05D004004 9.5e-29 132.1 507 27.6
HanXRQChr01g0028981 Helianthus annuus HOM05D003485 ORTHO05D004004 2.1e-28 131.0 485 28.7
Lalb_Chr02g0155221 Lupinus albus HOM05D003485 ORTHO05D004004 2.1e-28 131.0 529 29.3
COL.COLO4_29799 Corchorus olitorius HOM05D003485 ORTHO05D004004 2.8e-28 130.6 437 30.7
Actinidia10397 Actinidia chinensis HOM05D003485 ORTHO05D004004 4.7e-28 129.8 514 29.6
Lalb_Chr20g0112141 Lupinus albus HOM05D003485 ORTHO05D004004 8.0e-28 129.0 511 30.7
CAN.G824.15 Capsicum annuum HOM05D003485 ORTHO05D004004 1.4e-27 128.3 508 27.0
Nitab4.5_0004489g0010 Nicotiana tabacum HOM05D003485 ORTHO05D004004 3.1e-27 127.1 494 28.5
EL10Ac7g16972 Beta vulgaris HOM05D003485 ORTHO05D004004 1.2e-26 125.2 506 28.5
vmacro07380 Vaccinium macrocarpon HOM05D003485 ORTHO05D004004 3.4e-26 123.6 476 30.5
Sc02g0001100 Simmondsia chinensis HOM05D003485 ORTHO05D004004 5.8e-26 122.9 523 27.9
Cc06_g05360 Coffea canephora HOM05D003485 ORTHO05D004004 9.8e-26 122.1 562 29.4
HanXRQChr11g0351281 Helianthus annuus HOM05D003485 ORTHO05D004004 9.8e-26 122.1 472 30.3
TAR623G1754 Trochodendron aralioides HOM05D003485 ORTHO05D004004 9.8e-26 122.1 530 29.4
Lalb_Chr01g0018291 Lupinus albus HOM05D003485 ORTHO05D004004 8.3e-25 119.0 524 28.2
Dinv19839 Davidia involucrata HOM05D003485 ORTHO05D004004 3.2e-24 117.1 276 35.5
Ah.08g210850 Amaranthus hybridus HOM05D003485 ORTHO05D004004 7.0e-24 115.9 522 27.4
Gohir.D01G128400 Gossypium hirsutum HOM05D003485 ORTHO05D004004 2.1e-23 114.4 453 28.3
Gohir.A01G138700 Gossypium hirsutum HOM05D003485 ORTHO05D004004 4.6e-23 113.2 454 30.2
SGA_v2.0_scaffold184G39942 Striga asiatica HOM05D003485 ORTHO05D004004 4.6e-23 113.2 351 32.5
CARHR209630 Cardamine hirsuta HOM05D003485 ORTHO05D004004 1.3e-22 111.7 368 33.2
arahy.Tifrunner.gnm1.ann1.LG3GGS Arachis hypogaea HOM05D003485 ORTHO05D004004 3.0e-22 110.5 522 28.5
arahy.Tifrunner.gnm1.ann1.W633S9 Arachis hypogaea HOM05D003485 ORTHO05D004004 3.0e-22 110.5 522 28.5
Aqoxy2G01359 Aquilegia oxysepala HOM05D003485 ORTHO05D004004 5.0e-22 109.8 571 26.8
Gorai.002G159100 Gossypium raimondii HOM05D003485 ORTHO05D004004 6.6e-22 109.4 453 28.5
Eucgr.A01536 Eucalyptus grandis HOM05D003485 ORTHO05D004004 8.6e-22 109.0 499 27.5
Oeu040808.2 Olea europaea HOM05D003485 ORTHO05D004004 1.1e-21 108.6 492 27.6
Eucgr.K02068 Eucalyptus grandis HOM05D003485 ORTHO05D004004 1.5e-21 108.2 473 31.1
PSO384G0133 Papaver somniferum HOM05D003485 ORTHO05D004004 1.9e-21 107.8 567 26.5
TPR.G25373 Trifolium pratense HOM05D003485 ORTHO05D004004 2.5e-21 107.5 285 34.0
Rhsim03G0079600 Rhododendron simsii HOM05D003485 ORTHO05D004004 3.3e-21 107.1 496 28.2
DCAR_020774 Daucus carota HOM05D003485 ORTHO05D004004 5.6e-21 106.3 514 28.6
PSO339G0389 Papaver somniferum HOM05D003485 ORTHO05D004004 6.2e-20 102.8 562 26.2
Psat6g080680 Pisum sativum HOM05D003485 ORTHO05D004004 6.2e-20 102.8 351 29.3
Nn2g14048 Nelumbo nucifera HOM05D003485 ORTHO05D004004 1.4e-19 101.7 339 30.4
Migut.L01764 Erythranthe guttata HOM05D003485 ORTHO05D004004 8.9e-19 99.0 407 27.8
Actinidia08428 Actinidia chinensis HOM05D003485 ORTHO05D004004 1.5e-18 98.2 453 28.3
Migut.J00977 Erythranthe guttata HOM05D003485 ORTHO05D004004 4.4e-18 96.7 268 31.7
Rhsim04G0135000 Rhododendron simsii HOM05D003485 ORTHO05D004004 9.9e-18 95.5 580 26.9
Psat3g035000 Pisum sativum HOM05D003485 ORTHO05D004004 4.9e-17 93.2 281 33.8
Carub.0006s0258 Capsella rubella HOM05D003485 ORTHO05D004004 6.4e-17 92.8 282 35.1
MBI17_g01908_MAGBIO Magnolia biondii HOM05D003485 ORTHO05D004004 7.1e-16 89.4 498 25.5
Actinidia31285 Actinidia chinensis HOM05D003485 ORTHO05D004004 9.2e-16 89.0 287 30.0
Sopen09g003950 Solanum pennellii HOM05D003485 ORTHO05D004004 1.2e-15 88.6 278 29.5
MBI01_g46563_MAGBIO Magnolia biondii HOM05D003485 ORTHO05D004004 1.6e-15 88.2 167 34.7
ECA248G2160 Erigeron canadensis HOM05D003485 ORTHO05D004004 2.7e-15 87.4 383 26.9
Nn6g35018 Nelumbo nucifera HOM05D003485 ORTHO05D004004 3.5e-15 87.0 148 39.9
unitig_578.g15766 Utricularia gibba HOM05D003485 ORTHO05D004004 3.5e-15 87.0 306 29.7
ECA238G4534 Erigeron canadensis HOM05D003485 ORTHO05D004004 6.0e-15 86.3 262 34.7
Lj2A130G48 Lonicera japonica HOM05D003485 ORTHO05D004004 1.7e-14 84.7 428 29.7
Aqoxy4G02862 Aquilegia oxysepala HOM05D003485 ORTHO05D004004 6.6e-14 82.8 523 24.7
Ca_08971_v3 Cicer arietinum L. HOM05D003485 ORTHO05D004004 6.6e-14 82.8 287 31.0
SalBow5G3755 Salvia bowleyana HOM05D003485 ORTHO05D004004 1.9e-13 81.3 424 28.1
MELO3C000161.2 Cucumis melo HOM05D003485 ORTHO05D004004 4.7e-12 76.6 217 34.1
SGA_v2.0_scaffold40G15384 Striga asiatica HOM05D003485 ORTHO05D004004 1.1e-11 75.5 244 33.2
AUR62043111 Chenopodium quinoa HOM05D003485 ORTHO05D004004 2.4e-11 74.3 224 29.9
Dinv21244 Davidia involucrata HOM05D003485 ORTHO05D004004 2.4e-11 74.3 291 34.4
unitig_26.g9244 Utricularia gibba HOM05D003485 ORTHO05D004004 3.1e-11 73.9 303 28.7
MBI01_g18815_MAGBIO Magnolia biondii HOM05D003485 ORTHO05D004004 1.5e-10 71.6 262 31.7
DCAR_007743 Daucus carota HOM05D003485 ORTHO05D004004 6.4e-09 66.2 428 25.5
HanXRQChr11g0351271 Helianthus annuus HOM05D003485 ORTHO05D004004 8.4e-09 65.9 223 31.8


User provided reference genes

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