Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p23440 Brassica napus HOM05D004449 ORTHO05D005473 3.4e-175 618.2 309 100.0
BolC3t14740H Brassica oleracea HOM05D004449 ORTHO05D005473 2.8e-174 615.1 309 99.4
BraA03t11251Z Brassica rapa HOM05D004449 ORTHO05D005473 6.8e-168 594.0 309 95.8
A03p20000 Brassica napus HOM05D004449 ORTHO05D005473 9.8e-167 590.1 309 95.5
BcaB01g03853 Brassica carinata HOM05D004449 ORTHO05D005473 6.8e-160 567.4 309 90.9
BcaB02g09374 Brassica carinata HOM05D004449 ORTHO05D005473 1.1e-157 560.1 318 89.0
Sp4g18450 Schrenkiella parvula HOM05D004449 ORTHO05D005473 2.9e-155 552.0 318 88.7
Thhalv10016966m.g Eutrema salsugineum HOM05D004449 ORTHO05D005473 7.3e-154 547.4 318 88.4
A05p09610 Brassica napus HOM05D004449 ORTHO05D005473 2.1e-153 545.8 318 87.4
BraA05t19914Z Brassica rapa HOM05D004449 ORTHO05D005473 3.6e-153 545.0 318 87.4
CARHR130470 Cardamine hirsuta HOM05D004449 ORTHO05D005473 3.1e-152 542.0 304 89.8
AT2G36230 Arabidopsis thaliana HOM05D004449 ORTHO05D005473 4.0e-152 541.6 301 90.0
Carub.0004s1799 Capsella rubella HOM05D004449 ORTHO05D005473 1.2e-151 540.0 302 90.7
AL4G32330 Arabidopsis lyrata HOM05D004449 ORTHO05D005473 2.2e-150 535.8 302 90.4
BolC4t22839H Brassica oleracea HOM05D004449 ORTHO05D005473 6.6e-147 524.2 316 85.1
Aa31LG5G21350 Aethionema arabicum HOM05D004449 ORTHO05D005473 3.3e-146 521.9 309 85.8
BcaC02g11725 Brassica carinata HOM05D004449 ORTHO05D005473 4.9e-134 481.5 293 85.3
BcaC02g11727 Brassica carinata HOM05D004449 ORTHO05D005473 8.3e-134 480.7 298 83.6
THA.LOC104804908 Tarenaya hassleriana HOM05D004449 ORTHO05D005473 1.6e-129 466.5 312 75.3
C04p11920 Brassica napus HOM05D004449 ORTHO05D005473 2.8e-129 465.7 253 92.5
Ca_00406_v3 Cicer arietinum L. HOM05D004449 ORTHO05D005473 4.9e-126 454.9 282 79.8
TWI74G1045 Tripterygium wilfordii HOM05D004449 ORTHO05D005473 8.4e-126 454.1 310 74.2
Medtr2g015010 Medicago truncatula HOM05D004449 ORTHO05D005473 1.4e-125 453.4 284 79.6
Ciclev10012240m.g Citrus clementina HOM05D004449 ORTHO05D005473 1.3e-123 446.8 271 80.4
Manes.08G025500 Manihot esculenta HOM05D004449 ORTHO05D005473 3.9e-123 445.3 275 79.3
CANSAT64G1281 Cannabis sativa HOM05D004449 ORTHO05D005473 5.1e-123 444.9 259 85.3
MD14G1023300 Malus domestica HOM05D004449 ORTHO05D005473 5.1e-123 444.9 259 85.3
Glyma.13G153700 Glycine max HOM05D004449 ORTHO05D005473 8.7e-123 444.1 269 82.2
TPR.G11735 Trifolium pratense HOM05D004449 ORTHO05D005473 8.7e-123 444.1 272 79.4
Lj1g0018712 Lotus japonicus HOM05D004449 ORTHO05D005473 1.1e-122 443.7 271 81.2
Lsat_1_v5_gn_8_77140 Lactuca sativa HOM05D004449 ORTHO05D005473 3.3e-122 442.2 269 81.0
PGR042G0526 Punica granatum HOM05D004449 ORTHO05D005473 3.3e-122 442.2 271 80.4
FvH4_6g18790 Fragaria vesca HOM05D004449 ORTHO05D005473 9.6e-122 440.7 280 79.3
RcHm_v2.0_Chr3g0473801 Rosa chinensis HOM05D004449 ORTHO05D005473 9.6e-122 440.7 286 76.9
GSVIVG01033847001 Vitis vinifera HOM05D004449 ORTHO05D005473 9.6e-122 440.7 290 76.9
Eucgr.A02663 Eucalyptus grandis HOM05D004449 ORTHO05D005473 2.1e-121 439.5 264 82.2
MD12G1036500 Malus domestica HOM05D004449 ORTHO05D005473 2.1e-121 439.5 264 82.2
Phvul.009G260700 Phaseolus vulgaris HOM05D004449 ORTHO05D005473 2.8e-121 439.1 268 81.0
Potri.004G090500 Populus trichocarpa HOM05D004449 ORTHO05D005473 8.1e-121 437.6 266 80.1
Glyma.02G054800 Glycine max HOM05D004449 ORTHO05D005473 1.4e-120 436.8 259 84.6
Potri.017G124800 Populus trichocarpa HOM05D004449 ORTHO05D005473 1.4e-120 436.8 277 78.0
Sc02g0000280 Simmondsia chinensis HOM05D004449 ORTHO05D005473 1.4e-120 436.8 280 77.1
QL07p038716 Quercus lobata HOM05D004449 ORTHO05D005473 1.8e-120 436.4 283 76.3
QL07p038966 Quercus lobata HOM05D004449 ORTHO05D005473 1.8e-120 436.4 283 76.3
EL10Ac8g19596 Beta vulgaris HOM05D004449 ORTHO05D005473 6.9e-120 434.5 277 78.0
ClCG08G005200 Citrullus lanatus HOM05D004449 ORTHO05D005473 2.6e-119 432.6 269 79.6
VMungo1309G2207 Vigna mungo HOM05D004449 ORTHO05D005473 2.6e-119 432.6 297 74.7
CiPaw.10G010000 Carya illinoinensis HOM05D004449 ORTHO05D005473 3.4e-119 432.2 276 79.0
ECA248G0038 Erigeron canadensis HOM05D004449 ORTHO05D005473 4.4e-119 431.8 290 75.2
Lalb_Chr06g0172241 Lupinus albus HOM05D004449 ORTHO05D005473 4.4e-119 431.8 269 79.9
FAN02G4498 Fragaria x ananassa HOM05D004449 ORTHO05D005473 1.3e-118 430.3 285 76.8
Actinidia05427 Actinidia chinensis HOM05D004449 ORTHO05D005473 1.7e-118 429.9 271 77.9
Sed0019477 Sechium edule HOM05D004449 ORTHO05D005473 1.7e-118 429.9 275 76.7
Gohir.D04G099600 Gossypium hirsutum HOM05D004449 ORTHO05D005473 3.8e-118 428.7 256 81.6
Cfa016611 Carpinus fangiana HOM05D004449 ORTHO05D005473 4.9e-118 428.3 284 75.7
Gorai.009G402500 Gossypium raimondii HOM05D004449 ORTHO05D005473 8.4e-118 427.6 256 81.2
HanXRQChr03g0063591 Helianthus annuus HOM05D004449 ORTHO05D005473 1.4e-117 426.8 269 78.8
MELO3C022184.2 Cucumis melo HOM05D004449 ORTHO05D005473 3.2e-117 425.6 271 76.8
Gohir.A04G062600 Gossypium hirsutum HOM05D004449 ORTHO05D005473 3.2e-117 425.6 296 73.3
BcaB02g09373 Brassica carinata HOM05D004449 ORTHO05D005473 4.2e-117 425.2 337 68.8
Peaxi162Scf00858g00311 Petunia axillaris HOM05D004449 ORTHO05D005473 5.4e-117 424.9 287 75.6
Haze_19615 Corylus avellana HOM05D004449 ORTHO05D005473 1.2e-116 423.7 269 77.3
Nitab4.5_0006507g0050 Nicotiana tabacum HOM05D004449 ORTHO05D005473 1.2e-116 423.7 270 78.1
Sopen05g034560 Solanum pennellii HOM05D004449 ORTHO05D005473 1.2e-116 423.7 267 79.4
SalBow3G1569 Salvia bowleyana HOM05D004449 ORTHO05D005473 1.6e-116 423.3 259 79.2
Hma1.2p1_0084F.1_g043840 Hydrangea macrophylla HOM05D004449 ORTHO05D005473 2.1e-116 422.9 316 69.0
Hma1.2p1_0820F.1_g223850 Hydrangea macrophylla HOM05D004449 ORTHO05D005473 2.1e-116 422.9 316 69.0
Nn6g34893 Nelumbo nucifera HOM05D004449 ORTHO05D005473 2.7e-116 422.5 294 72.4
PGSC0003DMG400023338 Solanum tuberosum HOM05D004449 ORTHO05D005473 3.5e-116 422.2 267 79.0
vmacro21413 Vaccinium macrocarpon HOM05D004449 ORTHO05D005473 3.5e-116 422.2 267 76.4
CAN.G694.90 Capsicum annuum HOM05D004449 ORTHO05D005473 6.0e-116 421.4 267 79.0
Cc06_g05800 Coffea canephora HOM05D004449 ORTHO05D005473 6.0e-116 421.4 267 77.2
TAR623G0834 Trochodendron aralioides HOM05D004449 ORTHO05D005473 6.0e-116 421.4 259 79.2
FAN05G3651 Fragaria x ananassa HOM05D004449 ORTHO05D005473 7.9e-116 421.0 312 70.8
CSS0045328 Camellia sinensis var. sinensis HOM05D004449 ORTHO05D005473 1.0e-115 420.6 271 75.3
Solyc05g056150.4 Solanum lycopersicum HOM05D004449 ORTHO05D005473 1.0e-115 420.6 267 79.0
PSO339G4690 Papaver somniferum HOM05D004449 ORTHO05D005473 1.3e-115 420.2 300 69.7
FAN14G0980 Fragaria x ananassa HOM05D004449 ORTHO05D005473 1.7e-115 419.9 298 72.5
FAN05G3501 Fragaria x ananassa HOM05D004449 ORTHO05D005473 3.9e-115 418.7 326 67.5
Nitab4.5_0000582g0210 Nicotiana tabacum HOM05D004449 ORTHO05D005473 5.1e-115 418.3 272 77.2
SalBow4G0277 Salvia bowleyana HOM05D004449 ORTHO05D005473 5.1e-115 418.3 268 76.1
Zm00001eb020250 Zea mays HOM05D004449 ORTHO05D005473 1.1e-114 417.2 263 77.2
Zm00001eb287580 Zea mays HOM05D004449 ORTHO05D005473 3.3e-114 415.6 263 77.2
Nitab4.5_0004212g0050 Nicotiana tabacum HOM05D004449 ORTHO05D005473 1.3e-113 413.7 284 73.2
PSO384G3644 Papaver somniferum HOM05D004449 ORTHO05D005473 1.3e-113 413.7 300 69.7
Aqoxy1G00845 Aquilegia oxysepala HOM05D004449 ORTHO05D005473 2.1e-113 412.9 259 79.5
MSTRG.19262 Avicennia marina HOM05D004449 ORTHO05D005473 1.4e-112 410.2 258 77.5
MBI17_g08343_MAGBIO Magnolia biondii HOM05D004449 ORTHO05D005473 2.4e-112 409.5 269 75.1
RhsimUnG0066300 Rhododendron simsii HOM05D004449 ORTHO05D005473 5.3e-112 408.3 279 73.8
Migut.J01033 Erythranthe guttata HOM05D004449 ORTHO05D005473 1.2e-111 407.1 258 78.7
Ah.04g162190 Amaranthus hybridus HOM05D005123 ORTHO05D006532 7.6e-111 404.4 260 77.7
vmacro04352 Vaccinium macrocarpon HOM05D004449 ORTHO05D005473 1.7e-110 403.3 289 69.6
ATR1125G096 Amborella trichopoda HOM05D004449 ORTHO05D005473 2.2e-110 402.9 267 72.7
SHI27835 Sapria himalayana HOM05D004449 ORTHO05D005473 1.9e-109 399.8 291 69.1
CDE07G1047 Ceratophyllum demersum HOM05D004449 ORTHO05D005473 4.2e-109 398.7 259 73.4
Duzib093G2067 Durio zibethinus HOM05D004449 ORTHO05D005473 1.2e-108 397.1 261 76.2
Lj2A137G26 Lonicera japonica HOM05D004449 ORTHO05D005473 1.2e-108 397.1 248 78.6
Atru.chr12.1330 Acer truncatum HOM05D004449 ORTHO05D005473 2.5e-106 389.4 276 71.0
AUR62036483 Chenopodium quinoa HOM05D004449 ORTHO05D005473 1.1e-104 384.0 234 79.1
DCAR_006449 Daucus carota HOM05D004449 ORTHO05D005473 9.0e-104 380.9 231 78.8
Pp3c12_22840 Physcomitrium patens HOM05D004449 ORTHO05D005473 2.0e-103 379.8 263 69.2
Nitab4.5_0000071g0140 Nicotiana tabacum HOM05D004449 ORTHO05D005473 1.7e-102 376.7 293 66.6
HPP92_001188 Vanilla planifolia HOM05D004449 ORTHO05D005473 1.4e-101 373.6 261 68.2
AagrBONN_evm.TU.Sc2ySwM_344.169 Anthoceros agrestis HOM05D004449 ORTHO05D005473 7.1e-101 371.3 269 66.9
Prupe.7G109700 Prunus persica HOM05D004449 ORTHO05D005473 4.3e-98 362.1 249 74.7
Rhsim07G0247400 Rhododendron simsii HOM05D004449 ORTHO05D005473 4.3e-98 362.1 339 58.4
CiPaw.09G014500 Carya illinoinensis HOM05D004449 ORTHO05D005473 3.1e-96 355.9 259 71.4
Sabra17G0105100 Salix brachista HOM05D001392 ORTHO05D006407 4.1e-96 355.5 258 69.0
SGA_v2.0_scaffold75G24747 Striga asiatica HOM05D004449 ORTHO05D005473 2.0e-95 353.2 258 69.4
SMO271G0065 Selaginella moellendorffii HOM05D004449 ORTHO05D005473 2.6e-95 352.8 262 66.8
Cre12.g495300 Chlamydomonas reinhardtii HOM05D004449 ORTHO05D005473 1.7e-94 350.1 261 64.0
AUR62037092 Chenopodium quinoa HOM05D004449 ORTHO05D005473 4.2e-93 345.5 249 70.7
Dinv21204 Davidia involucrata HOM05D004449 ORTHO05D005473 1.0e-91 340.9 217 76.0
Mapoly0011s0027 Marchantia polymorpha HOM05D004449 ORTHO05D005473 1.8e-91 340.1 270 63.3
PRCOL_00002294 Prasinoderma coloniale HOM05D004449 ORTHO05D005473 1.8e-91 340.1 263 65.8
CsaV3_5G040040 Cucumis sativus L. HOM05D004449 ORTHO05D005473 9.7e-90 334.3 217 76.5
MCO11G008 Micromonas commoda HOM05D004449 ORTHO05D005473 2.8e-89 332.8 263 62.4
VMungo0647G1368 Vigna mungo HOM05D004449 ORTHO05D005473 2.5e-85 319.7 255 67.8
Thecc.05G089600 Theobroma cacao HOM05D004449 ORTHO05D005473 1.4e-83 313.9 189 81.0
CBR_g21822 Chara braunii HOM05D004449 ORTHO05D005473 1.1e-82 310.8 272 59.6
Atru.chr8.1532 Acer truncatum HOM05D004449 ORTHO05D005473 7.4e-82 308.1 181 80.7
Cpa.g.sc999.2 Carica papaya HOM05D004449 ORTHO05D005473 1.5e-79 300.4 311 55.9
Lalb_Chr06g0172381 Lupinus albus HOM05D004449 ORTHO05D005473 9.4e-77 291.2 171 81.9
vmacro04351 Vaccinium macrocarpon HOM05D004449 ORTHO05D005473 2.1e-76 290.0 237 62.9
Rhsim07G0247300 Rhododendron simsii HOM05D004449 ORTHO05D005473 5.9e-71 271.9 184 72.8
RhsimUnG0066500 Rhododendron simsii HOM05D004449 ORTHO05D005473 1.5e-69 267.3 184 71.7
ClCG08G000960 Citrullus lanatus HOM05D004449 ORTHO05D005473 6.3e-65 251.9 182 70.3
Psat1g201080 Pisum sativum HOM05D004449 ORTHO05D005473 9.1e-64 248.1 172 73.3
BcaC02g11729 Brassica carinata HOM05D004449 ORTHO05D005473 1.2e-63 247.7 168 78.0
RcHm_v2.0_Chr5g0027171 Rosa chinensis HOM05D004449 ORTHO05D005473 3.8e-62 242.7 171 73.1
Oeu056880.1 Olea europaea HOM05D004449 ORTHO05D005473 1.8e-59 233.8 148 74.3
COL.COLO4_29729 Corchorus olitorius HOM05D004449 ORTHO05D005473 6.8e-59 231.9 140 77.1
Cfa023382 Carpinus fangiana HOM05D004449 ORTHO05D005473 5.7e-58 228.8 261 45.6
arahy.Tifrunner.gnm1.ann1.1FC84E Arachis hypogaea HOM05D004449 ORTHO05D005473 8.3e-49 198.4 115 81.7
arahy.Tifrunner.gnm1.ann1.IMVN0M Arachis hypogaea HOM05D004449 ORTHO05D005473 8.3e-49 198.4 115 81.7
arahy.Tifrunner.gnm1.ann1.H91IF8 Arachis hypogaea HOM05D004449 ORTHO05D005473 9.2e-48 194.9 117 79.5
arahy.Tifrunner.gnm1.ann1.L677I4 Arachis hypogaea HOM05D004449 ORTHO05D005473 1.2e-47 194.5 117 78.6
Cc11_g01850 Coffea canephora HOM05D004449 ORTHO05D005473 1.2e-47 194.5 144 66.7
ECA233G4866 Erigeron canadensis HOM05D004449 ORTHO05D005473 1.1e-45 188.0 117 80.3
RcHm_v2.0_Chr4g0393091 Rosa chinensis HOM05D004449 ORTHO05D005473 9.2e-40 168.3 108 75.0
SEGI_28293 Sequoiadendron giganteum HOM05D004449 ORTHO05D005473 1.5e-37 161.0 142 60.6
Mapoly0100s0062 Marchantia polymorpha HOM05D004449 ORTHO05D005473 1.2e-36 157.9 129 57.4
SMO308G0039 Selaginella moellendorffii HOM05D004449 ORTHO05D005473 2.1e-36 157.1 145 55.2
BcaC02g11730 Brassica carinata HOM05D004449 ORTHO05D005473 8.9e-35 151.8 114 72.8
unitig_8.g4306 Utricularia gibba HOM05D004449 ORTHO05D005473 2.6e-34 150.2 273 37.7
CDE04G3206 Ceratophyllum demersum HOM05D004449 ORTHO05D005473 8.3e-33 145.2 173 45.7
RcHm_v2.0_Chr1g0350151 Rosa chinensis HOM05D004449 ORTHO05D005473 7.0e-32 142.1 88 75.0
SMO164G0227 Selaginella moellendorffii HOM05D004449 ORTHO05D005473 7.0e-32 142.1 115 60.0
COL.COLO4_29730 Corchorus olitorius HOM05D004449 ORTHO05D005473 4.3e-29 132.9 119 64.7
CDE04G2184 Ceratophyllum demersum HOM05D004449 ORTHO05D000837 2.1e-28 130.6 189 42.3
Os05g0400800 Oryza sativa ssp. japonica HOM05D004449 ORTHO05D005473 4.0e-27 126.3 88 73.9
TAR369G0358 Trochodendron aralioides HOM05D003904 ORTHO05D004378 1.1e-24 118.2 159 48.4
SEGI_22783 Sequoiadendron giganteum HOM05D004449 ORTHO05D005473 5.4e-24 115.9 71 76.1
Lalb_Chr06g0172371 Lupinus albus HOM05D004449 ORTHO05D005473 6.6e-22 109.0 71 78.9
Rhsim07G0247200 Rhododendron simsii HOM05D004449 ORTHO05D005473 2.3e-19 100.5 65 69.2
Sabra04G0060800 Salix brachista HOM05D004449 ORTHO05D005473 5.8e-18 95.9 191 38.2
arahy.Tifrunner.gnm1.ann1.E2537D Arachis hypogaea HOM05D019151 ORTHO05D005473 4.9e-17 92.8 88 55.7
arahy.Tifrunner.gnm1.ann1.TG6NMP Arachis hypogaea HOM05D019151 ORTHO05D005473 4.9e-17 92.8 88 55.7
Rhsim09G0019600 Rhododendron simsii HOM05D004449 ORTHO05D005473 1.3e-14 84.7 71 66.2
RcHm_v2.0_Chr4g0409701 Rosa chinensis HOM05D004449 ORTHO05D005473 5.1e-14 82.8 46 87.0
SEGI_40272 Sequoiadendron giganteum HOM05D004449 ORTHO05D005473 7.1e-08 62.4 34 76.5
Aqoxy84s005 Aquilegia oxysepala HOM05D004902 ORTHO05D038539 1.2e-07 61.6 243 20.6


User provided reference genes

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