Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p23410 Brassica napus HOM05D000108 ORTHO05D024582 2.7e-65 251.9 131 100.0
Sp4g18420 Schrenkiella parvula HOM05D000108 ORTHO05D001149 1.5e-20 103.2 59 89.8
CARHR130440 Cardamine hirsuta HOM05D000108 ORTHO05D001149 1.0e-19 100.5 59 86.4
BcaB02g09378 Brassica carinata HOM05D000108 ORTHO05D001149 1.7e-19 99.8 59 84.7
A04p27690 Brassica napus HOM05D000108 ORTHO05D024582 2.2e-19 99.4 59 86.4
A05p09640 Brassica napus HOM05D000108 ORTHO05D001149 2.2e-19 99.4 59 84.7
BraA05t19918Z Brassica rapa HOM05D000108 ORTHO05D001149 2.2e-19 99.4 59 84.7
BcaC02g11722 Brassica carinata HOM05D000108 ORTHO05D001149 3.8e-19 98.6 59 84.7
C04p11980 Brassica napus HOM05D000108 ORTHO05D001149 3.8e-19 98.6 59 84.7
BolC4t22842H Brassica oleracea HOM05D000108 ORTHO05D001149 3.8e-19 98.6 59 84.7
BraA04t18264Z Brassica rapa HOM05D000108 ORTHO05D001149 3.8e-19 98.6 59 86.4
AL4G32300 Arabidopsis lyrata HOM05D000108 ORTHO05D001149 6.5e-19 97.8 59 81.4
AT2G36200 Arabidopsis thaliana HOM05D000108 ORTHO05D001149 6.5e-19 97.8 59 81.4
BcaB06g28920 Brassica carinata HOM05D000108 ORTHO05D001149 6.5e-19 97.8 59 84.7
Carub.0004s1796 Capsella rubella HOM05D000108 ORTHO05D001149 1.4e-18 96.7 59 83.1
BcaC02g07624 Brassica carinata HOM05D000108 ORTHO05D001149 9.3e-18 94.0 59 83.1
BolC4t28001H Brassica oleracea HOM05D000108 ORTHO05D001149 9.3e-18 94.0 59 83.1
Thhalv10016176m.g Eutrema salsugineum HOM05D000108 ORTHO05D001149 9.3e-18 94.0 59 81.4
Aa31LG5G21320 Aethionema arabicum HOM05D000108 ORTHO05D001149 6.0e-17 91.3 60 80.0
FAN02G2608 Fragaria x ananassa HOM05D000108 ORTHO05D001149 6.7e-16 87.8 62 69.4
THA.LOC104799758 Tarenaya hassleriana HOM05D000108 ORTHO05D001149 6.7e-16 87.8 60 76.7
FAN14G5493 Fragaria x ananassa HOM05D000108 ORTHO05D001149 8.7e-16 87.4 62 69.4
FAN05G3241 Fragaria x ananassa HOM05D000108 ORTHO05D001149 1.1e-15 87.0 62 69.4
FAN09G2209 Fragaria x ananassa HOM05D000108 ORTHO05D001149 1.1e-15 87.0 62 69.4
THA.LOC104823493 Tarenaya hassleriana HOM05D000108 ORTHO05D001149 1.1e-15 87.0 58 72.4
PGR142G4316 Punica granatum HOM05D000108 ORTHO05D001149 1.9e-15 86.3 59 72.9
RcHm_v2.0_Chr3g0474331 Rosa chinensis HOM05D000108 ORTHO05D001149 2.5e-15 85.9 62 67.7
Aa31LG10G7660 Aethionema arabicum HOM05D000108 ORTHO05D001149 3.3e-15 85.5 59 76.3
Duzib106G0700 Durio zibethinus HOM05D000108 ORTHO05D001149 4.3e-15 85.1 59 74.6
Nitab4.5_0001933g0050 Nicotiana tabacum HOM05D000108 ORTHO05D001149 4.3e-15 85.1 58 72.4
BNapus_Darmor_BZH_scaffold_239p00070 Brassica napus HOM05D000108 ORTHO05D024582 7.4e-15 84.3 50 84.0
COL.COLO4_29695 Corchorus olitorius HOM05D000108 ORTHO05D001149 7.4e-15 84.3 59 72.9
Psat6g079880 Pisum sativum HOM05D000108 ORTHO05D001149 7.4e-15 84.3 61 68.9
Ciclev10010974m.g Citrus clementina HOM05D000108 ORTHO05D001149 9.6e-15 84.0 63 69.8
Cc06_g06060 Coffea canephora HOM05D000108 ORTHO05D001149 1.6e-14 83.2 59 67.8
Lj5g0005745 Lotus japonicus HOM05D000108 ORTHO05D001149 1.6e-14 83.2 59 71.2
SGA_v2.0_scaffold35G14046 Striga asiatica HOM05D000108 ORTHO05D001149 1.6e-14 83.2 59 69.5
Dinv31703 Davidia involucrata HOM05D000108 ORTHO05D001149 2.1e-14 82.8 59 67.8
MD12G1028000 Malus domestica HOM05D000108 ORTHO05D001149 2.8e-14 82.4 59 69.5
Nitab4.5_0001875g0130 Nicotiana tabacum HOM05D000108 ORTHO05D001149 2.8e-14 82.4 58 69.0
Cfa016630 Carpinus fangiana HOM05D000108 ORTHO05D001149 3.7e-14 82.0 59 71.2
Haze_19636 Corylus avellana HOM05D000108 ORTHO05D001149 3.7e-14 82.0 59 71.2
Duzib093G0492 Durio zibethinus HOM05D000108 ORTHO05D001149 3.7e-14 82.0 59 71.2
Peaxi162Scf01023g00417 Petunia axillaris HOM05D000108 ORTHO05D001149 3.7e-14 82.0 58 72.4
CSS0016633 Camellia sinensis var. sinensis HOM05D000108 ORTHO05D001149 4.8e-14 81.6 59 69.5
CSS0030776 Camellia sinensis var. sinensis HOM05D000108 ORTHO05D001149 4.8e-14 81.6 59 69.5
Cpa.g.sc104.110 Carica papaya HOM05D000108 ORTHO05D001149 4.8e-14 81.6 59 69.5
CiPaw.10G011400 Carya illinoinensis HOM05D000108 ORTHO05D001149 6.3e-14 81.3 59 69.5
Gohir.A09G140300 Gossypium hirsutum HOM05D000108 ORTHO05D001149 6.3e-14 81.3 59 69.5
Actinidia31262 Actinidia chinensis HOM05D000108 ORTHO05D001149 8.2e-14 80.9 59 67.8
CSS0009350 Camellia sinensis var. sinensis HOM05D000108 ORTHO05D001149 1.1e-13 80.5 59 69.5
CANSAT64G2391 Cannabis sativa HOM05D000108 ORTHO05D001149 1.1e-13 80.5 59 66.1
Eucgr.K02024 Eucalyptus grandis HOM05D000108 ORTHO05D001149 1.1e-13 80.5 59 66.1
Prupe.7G103600 Prunus persica HOM05D000108 ORTHO05D001149 1.1e-13 80.5 59 67.8
CiPaw.09G016000 Carya illinoinensis HOM05D000108 ORTHO05D001149 1.4e-13 80.1 59 67.8
Duzib128G1422 Durio zibethinus HOM05D000108 ORTHO05D001149 1.4e-13 80.1 59 71.2
Gorai.006G153900 Gossypium raimondii HOM05D000108 ORTHO05D001149 1.4e-13 80.1 59 67.8
Manes.08G027100 Manihot esculenta HOM05D000108 ORTHO05D001149 1.4e-13 80.1 59 67.8
Nn2g14198 Nelumbo nucifera HOM05D000108 ORTHO05D001149 1.4e-13 80.1 59 66.1
Rhsim03G0073800 Rhododendron simsii HOM05D000108 ORTHO05D001149 1.4e-13 80.1 58 67.2
PGSC0003DMG400008945 Solanum tuberosum HOM05D000108 ORTHO05D001149 1.4e-13 80.1 58 67.2
PGSC0003DMG400028253 Solanum tuberosum HOM05D000108 ORTHO05D001149 1.4e-13 80.1 58 65.5
vmacro07426 Vaccinium macrocarpon HOM05D000108 ORTHO05D001149 1.4e-13 80.1 58 67.2
Solyc09g010060.3 Solanum lycopersicum HOM05D000108 ORTHO05D001149 1.8e-13 79.7 58 69.0
Sopen09g004800 Solanum pennellii HOM05D000108 ORTHO05D001149 1.8e-13 79.7 58 69.0
MD14G1028400 Malus domestica HOM05D000108 ORTHO05D001149 2.4e-13 79.3 59 67.8
Potri.006G210700 Populus trichocarpa HOM05D000108 ORTHO05D001149 2.4e-13 79.3 58 69.0
SGA_v2.0_scaffold184G39977 Striga asiatica HOM05D000108 ORTHO05D001149 2.4e-13 79.3 59 66.1
TWI53G1066 Tripterygium wilfordii HOM05D000108 ORTHO05D001149 2.4e-13 79.3 59 66.1
Oeu025669.1 Olea europaea HOM05D000108 ORTHO05D001149 3.1e-13 79.0 58 67.2
Thecc.05G092200 Theobroma cacao HOM05D000108 ORTHO05D001149 3.1e-13 79.0 59 71.2
CAN.G1069.12 Capsicum annuum HOM05D000108 ORTHO05D001149 4.1e-13 78.6 58 69.0
Manes.09G053600 Manihot esculenta HOM05D000108 ORTHO05D001149 4.1e-13 78.6 59 66.1
Potri.016G077800 Populus trichocarpa HOM05D000108 ORTHO05D001149 4.1e-13 78.6 58 65.5
Atru.chr8.1470 Acer truncatum HOM05D000108 ORTHO05D001149 5.3e-13 78.2 59 66.1
GSVIVG01033871001 Vitis vinifera HOM05D000108 ORTHO05D001149 5.3e-13 78.2 59 62.7
Nn6g34851 Nelumbo nucifera HOM05D000108 ORTHO05D001149 6.9e-13 77.8 59 64.4
Solyc10g083310.2 Solanum lycopersicum HOM05D000108 ORTHO05D001149 6.9e-13 77.8 58 65.5
Sopen10g032790 Solanum pennellii HOM05D000108 ORTHO05D001149 6.9e-13 77.8 58 65.5
Phvul.001G191500 Phaseolus vulgaris HOM05D000108 ORTHO05D001149 9.0e-13 77.4 59 66.1
Sabra06G0162200 Salix brachista HOM05D000108 ORTHO05D001149 9.0e-13 77.4 58 67.2
Glyma.03G197300 Glycine max HOM05D000108 ORTHO05D001149 1.2e-12 77.0 59 66.1
Glyma.19G195300 Glycine max HOM05D000108 ORTHO05D001149 1.2e-12 77.0 59 66.1
Gohir.D09G134200 Gossypium hirsutum HOM05D000108 ORTHO05D001149 1.2e-12 77.0 59 66.1
Lalb_Chr02g0154841 Lupinus albus HOM05D000108 ORTHO05D001149 1.2e-12 77.0 59 67.8
QL07p038527 Quercus lobata HOM05D000108 ORTHO05D001149 1.2e-12 77.0 58 65.5
Nitab4.5_0003404g0060 Nicotiana tabacum HOM05D000108 ORTHO05D001149 2.0e-12 76.3 58 70.7
Ca_08900_v3 Cicer arietinum L. HOM05D000108 ORTHO05D001149 2.6e-12 75.9 59 64.4
Gorai.002G238800 Gossypium raimondii HOM05D000108 ORTHO05D001149 2.6e-12 75.9 60 70.0
TAR633G1010 Trochodendron aralioides HOM05D000108 ORTHO05D001149 2.6e-12 75.9 59 66.1
Gohir.A01G205200 Gossypium hirsutum HOM05D000108 ORTHO05D001149 3.4e-12 75.5 60 70.0
Gohir.D01G194700 Gossypium hirsutum HOM05D000108 ORTHO05D001149 3.4e-12 75.5 60 68.3
Sabra16G0079700 Salix brachista HOM05D000108 ORTHO05D001149 3.4e-12 75.5 58 63.8
Migut.J01016 Erythranthe guttata HOM05D000108 ORTHO05D001149 4.5e-12 75.1 59 66.1
SalBow5G1070 Salvia bowleyana HOM05D000108 ORTHO05D001149 4.5e-12 75.1 59 62.7
CAN.G397.76 Capsicum annuum HOM05D000108 ORTHO05D001149 5.9e-12 74.7 58 63.8
MSTRG.5859 Avicennia marina HOM05D000108 ORTHO05D001149 7.6e-12 74.3 59 59.3
Lalb_Chr01g0018071 Lupinus albus HOM05D000108 ORTHO05D024582 1.7e-11 73.2 59 61.0
VMungo1383G2688 Vigna mungo HOM05D000108 ORTHO05D001149 1.7e-11 73.2 59 62.7
Migut.L01796 Erythranthe guttata HOM05D000108 ORTHO05D001149 2.9e-11 72.4 58 60.3
MBI17_g29798_MAGBIO Magnolia biondii HOM05D000108 ORTHO05D001149 2.9e-11 72.4 59 64.4
Lj3C996G12 Lonicera japonica HOM05D000108 ORTHO05D001149 5.0e-11 71.6 59 59.3
Sc20g0006360 Simmondsia chinensis HOM05D000108 ORTHO05D001149 5.0e-11 71.6 59 62.7
Medtr1g059730 Medicago truncatula HOM05D000108 ORTHO05D001149 6.5e-11 71.2 58 63.8
PSO339G0093 Papaver somniferum HOM05D000108 ORTHO05D001149 8.4e-11 70.9 59 62.7
PSO384G1988 Papaver somniferum HOM05D000108 ORTHO05D001149 8.4e-11 70.9 59 62.7
SalBow3G3600 Salvia bowleyana HOM05D000108 ORTHO05D001149 8.4e-11 70.9 59 64.4
Sabra16G0082200 Salix brachista HOM05D000001 ORTHO05D001149 1.1e-10 70.5 52 65.4
TAR369G1141 Trochodendron aralioides HOM05D000108 ORTHO05D001149 1.1e-10 70.5 59 61.0
Medtr7g105030 Medicago truncatula HOM05D000108 ORTHO05D001149 1.4e-10 70.1 60 60.0
Zm00001eb039420 Zea mays HOM05D000108 ORTHO05D001149 1.4e-10 70.1 59 59.3
Oeu047851.1 Olea europaea HOM05D000108 ORTHO05D001149 1.9e-10 69.7 59 61.0
Sed0016130 Sechium edule HOM05D000108 ORTHO05D001149 1.9e-10 69.7 60 65.0
ClCG10G018810 Citrullus lanatus HOM05D000108 ORTHO05D001149 2.5e-10 69.3 60 65.0
TPR.G14773 Trifolium pratense HOM05D000108 ORTHO05D001149 2.5e-10 69.3 61 60.7
TAR623G1423 Trochodendron aralioides HOM05D000108 ORTHO05D001149 2.5e-10 69.3 59 59.3
HanXRQChr08g0229781 Helianthus annuus HOM05D000108 ORTHO05D001149 3.2e-10 68.9 59 59.3
Aqoxy2G01094 Aquilegia oxysepala HOM05D000108 ORTHO05D001149 4.2e-10 68.6 59 57.6
CsaV3_3G037420 Cucumis sativus L. HOM05D000108 ORTHO05D001149 4.2e-10 68.6 59 61.0
Psat3g031920 Pisum sativum HOM05D000108 ORTHO05D001149 4.2e-10 68.6 59 55.9
TPR.G23361 Trifolium pratense HOM05D000108 ORTHO05D001149 5.5e-10 68.2 60 58.3
HPP92_013814 Vanilla planifolia HOM05D000108 ORTHO05D001149 5.5e-10 68.2 59 62.7
Lalb_Chr06g0172451 Lupinus albus HOM05D000108 ORTHO05D001149 7.2e-10 67.8 59 57.6
MELO3C009486.2 Cucumis melo HOM05D000108 ORTHO05D001149 9.3e-10 67.4 60 60.0
DCAR_013405 Daucus carota HOM05D000108 ORTHO05D001149 9.3e-10 67.4 58 56.9
Sabra16G0082400 Salix brachista HOM05D000001 ORTHO05D001149 9.3e-10 67.4 52 63.5
EL10Ac7g16897 Beta vulgaris HOM05D000108 ORTHO05D001149 1.2e-09 67.0 59 59.3
MSTRG.19272 Avicennia marina HOM05D000108 ORTHO05D001149 1.6e-09 66.6 59 57.6
Ca_09018_v3 Cicer arietinum L. HOM05D000108 ORTHO05D001149 1.6e-09 66.6 60 58.3
Oeu047210.1 Olea europaea HOM05D000108 ORTHO05D001149 1.6e-09 66.6 46 69.6
Hma1.2p1_0820F.1_g223950 Hydrangea macrophylla HOM05D000108 ORTHO05D001149 2.1e-09 66.2 45 68.9
SHI23862 Sapria himalayana HOM05D000105 ORTHO05D001149 2.7e-09 65.9 46 69.6
Actinidia05414 Actinidia chinensis HOM05D000108 ORTHO05D001149 3.5e-09 65.5 58 53.4
Sed0021651 Sechium edule HOM05D000108 ORTHO05D001149 3.5e-09 65.5 60 61.7
arahy.Tifrunner.gnm1.ann1.KFQ7S3 Arachis hypogaea HOM05D000108 ORTHO05D001149 4.6e-09 65.1 59 59.3
arahy.Tifrunner.gnm1.ann1.R3Y850 Arachis hypogaea HOM05D000108 ORTHO05D001149 4.6e-09 65.1 59 59.3
HanXRQChr05g0133571 Helianthus annuus HOM05D000108 ORTHO05D001149 7.9e-09 64.3 59 55.9
HanXRQChr06g0176111 Helianthus annuus HOM05D000108 ORTHO05D001149 7.9e-09 64.3 59 54.2
ECA236G2589 Erigeron canadensis HOM05D000108 ORTHO05D001149 1.0e-08 63.9 59 55.9
Lsat_1_v5_gn_8_78220 Lactuca sativa HOM05D000108 ORTHO05D001149 1.0e-08 63.9 59 59.3
arahy.Tifrunner.gnm1.ann1.RA398F Arachis hypogaea HOM05D000108 ORTHO05D001149 1.8e-08 63.2 59 57.6
HanXRQChr11g0341891 Helianthus annuus HOM05D003261 ORTHO05D024582 1.8e-08 63.2 59 52.5
AUR62006204 Chenopodium quinoa HOM05D000108 ORTHO05D001149 2.3e-08 62.8 59 55.9
AUR62037015 Chenopodium quinoa HOM05D000108 ORTHO05D001149 2.3e-08 62.8 59 55.9
CDE02G2248 Ceratophyllum demersum HOM05D000108 ORTHO05D001149 6.7e-08 61.2 61 52.5
TWI74G1552 Tripterygium wilfordii HOM05D000108 ORTHO05D001149 8.7e-08 60.8 39 71.8
Lsat_1_v5_gn_9_20980 Lactuca sativa HOM05D000108 ORTHO05D001149 3.3e-07 58.9 61 54.1
PSO339G3190 Papaver somniferum HOM05D000108 ORTHO05D001149 3.3e-07 58.9 66 48.5
PSO801G0279 Papaver somniferum HOM05D000108 ORTHO05D001149 4.3e-07 58.5 66 48.5
CDE08G1573 Ceratophyllum demersum HOM05D000108 ORTHO05D001149 9.7e-07 57.4 61 49.2
Hund03938 Selenicereus undatus HOM05D000108 ORTHO05D001149 3.7e-06 55.5 59 47.5
Lj2C140T8 Lonicera japonica HOM05D000108 ORTHO05D001149 6.3e-06 54.7 34 73.5


User provided reference genes

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