Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g05707 Brassica carinata HOM05D005690 ORTHO05D007075 9.1e-128 460.3 241 100.0
C03p22980 Brassica napus HOM05D005690 ORTHO05D007075 9.1e-128 460.3 241 100.0
A03p19730 Brassica napus HOM05D005690 ORTHO05D007075 1.8e-123 446.0 245 97.1
Sp4g18050 Schrenkiella parvula HOM05D005690 ORTHO05D007075 3.5e-119 431.8 242 95.0
Thhalv10017166m.g Eutrema salsugineum HOM05D005690 ORTHO05D007075 4.1e-112 408.3 245 90.6
A04p27260 Brassica napus HOM05D005690 ORTHO05D007075 2.0e-111 406.0 249 84.7
BcaB01g03881 Brassica carinata HOM05D005690 ORTHO05D007075 5.9e-111 404.4 248 91.1
BolC4t27955H Brassica oleracea HOM05D005690 ORTHO05D007075 2.3e-110 402.5 242 86.0
AL4G31900 Arabidopsis lyrata HOM05D005690 ORTHO05D007075 2.9e-110 402.1 242 86.0
BraA04t18224Z Brassica rapa HOM05D005690 ORTHO05D007075 1.9e-109 399.4 249 84.3
Carub.0004s1755 Capsella rubella HOM05D005690 ORTHO05D007075 2.5e-109 399.1 242 86.4
C04p64770 Brassica napus HOM05D005690 ORTHO05D007075 1.2e-108 396.7 247 84.2
BcaB06g28872 Brassica carinata HOM05D005690 ORTHO05D007075 1.0e-107 393.7 247 84.6
AT2G35790 Arabidopsis thaliana HOM05D005690 ORTHO05D007075 3.0e-107 392.1 242 84.7
CARHR130040 Cardamine hirsuta HOM05D005690 ORTHO05D007075 8.9e-107 390.6 242 84.7
Aa31LG9G7550 Aethionema arabicum HOM05D005690 ORTHO05D007075 4.7e-100 368.2 245 81.2
BcaC02g07668 Brassica carinata HOM05D005690 ORTHO05D007075 9.8e-98 360.5 219 84.9
THA.LOC104802837 Tarenaya hassleriana HOM05D005690 ORTHO05D007075 6.8e-83 311.2 247 67.2
GSVIVG01016316001 Vitis vinifera HOM05D005690 ORTHO05D007075 2.0e-82 309.7 245 68.6
Potri.010G219400 Populus trichocarpa HOM05D005690 ORTHO05D007075 1.2e-79 300.4 242 64.5
MD01G1111700 Malus domestica HOM05D005690 ORTHO05D007075 2.7e-79 299.3 246 64.6
Manes.07G103000 Manihot esculenta HOM05D005690 ORTHO05D007075 2.7e-79 299.3 244 65.2
Potri.008G042800 Populus trichocarpa HOM05D005690 ORTHO05D007075 2.7e-79 299.3 243 65.8
Ciclev10032614m.g Citrus clementina HOM05D005690 ORTHO05D007075 1.0e-78 297.4 246 64.2
TAR636G2049 Trochodendron aralioides HOM05D005690 ORTHO05D007075 3.0e-78 295.8 249 63.5
Sopen05g034500 Solanum pennellii HOM05D005690 ORTHO05D007075 5.1e-78 295.0 244 63.1
CiPaw.02G175700 Carya illinoinensis HOM05D005690 ORTHO05D007075 8.6e-78 294.3 246 63.4
Solyc05g056090.3 Solanum lycopersicum HOM05D005690 ORTHO05D007075 1.1e-77 293.9 244 62.7
Gohir.A06G178200 Gossypium hirsutum HOM05D005690 ORTHO05D007075 3.3e-77 292.4 244 62.7
Cc02_g11390 Coffea canephora HOM05D005690 ORTHO05D007075 4.3e-77 292.0 248 63.7
CAN.G694.84 Capsicum annuum HOM05D005690 ORTHO05D007075 5.6e-77 291.6 247 62.8
VMungo0464G0948 Vigna mungo HOM05D005690 ORTHO05D007075 5.6e-77 291.6 244 63.5
Prupe.2G217200 Prunus persica HOM05D005690 ORTHO05D007075 7.3e-77 291.2 246 63.4
PGSC0003DMG400023460 Solanum tuberosum HOM05D005690 ORTHO05D007075 7.3e-77 291.2 250 61.6
Gorai.010G204700 Gossypium raimondii HOM05D005690 ORTHO05D007075 9.6e-77 290.8 244 63.1
Dinv11797 Davidia involucrata HOM05D005690 ORTHO05D007075 1.2e-76 290.4 249 63.1
QL08p056659 Quercus lobata HOM05D005690 ORTHO05D007075 1.2e-76 290.4 244 63.5
CANSAT56G3535 Cannabis sativa HOM05D005690 ORTHO05D007075 1.6e-76 290.0 245 63.3
Cpa.g.sc53.43 Carica papaya HOM05D005690 ORTHO05D007075 1.6e-76 290.0 244 63.5
Peaxi162Scf00108g00166 Petunia axillaris HOM05D005690 ORTHO05D007075 2.8e-76 289.3 247 63.2
Sabra08G0029500 Salix brachista HOM05D005690 ORTHO05D007075 2.8e-76 289.3 252 63.1
Duzib114G0556 Durio zibethinus HOM05D005690 ORTHO05D007075 3.6e-76 288.9 246 62.6
Gohir.D06G176800 Gossypium hirsutum HOM05D005690 ORTHO05D007075 3.6e-76 288.9 244 62.7
MD07G1177900 Malus domestica HOM05D005690 ORTHO05D007075 3.6e-76 288.9 246 62.6
Atru.chr12.697 Acer truncatum HOM05D005690 ORTHO05D007075 6.2e-76 288.1 246 63.4
Thecc.10G069500 Theobroma cacao HOM05D005690 ORTHO05D007075 6.2e-76 288.1 245 62.4
TAR633G2147 Trochodendron aralioides HOM05D005690 ORTHO05D007075 1.1e-75 287.3 244 62.7
TPR.G36634 Trifolium pratense HOM05D005690 ORTHO05D007075 1.8e-75 286.6 255 62.7
Glyma.17G183500 Glycine max HOM05D005690 ORTHO05D007075 2.4e-75 286.2 244 62.7
Atru.chr12.670 Acer truncatum HOM05D005690 ORTHO05D007075 3.1e-75 285.8 244 63.1
FvH4_7g20020 Fragaria vesca HOM05D005690 ORTHO05D007075 3.1e-75 285.8 247 62.3
FAN03G1698 Fragaria x ananassa HOM05D005690 ORTHO05D007075 3.1e-75 285.8 247 62.3
FAN06G0212 Fragaria x ananassa HOM05D005690 ORTHO05D007075 3.1e-75 285.8 247 62.3
FAN10G0816 Fragaria x ananassa HOM05D005690 ORTHO05D007075 4.0e-75 285.4 247 62.3
COL.COLO4_32034 Corchorus olitorius HOM05D005690 ORTHO05D007075 6.8e-75 284.6 255 61.2
Phvul.004G075000 Phaseolus vulgaris HOM05D005690 ORTHO05D007075 6.8e-75 284.6 244 62.3
Nitab4.5_0012288g0020 Nicotiana tabacum HOM05D005690 ORTHO05D007075 1.2e-74 283.9 247 61.9
ECA232G2854 Erigeron canadensis HOM05D005690 ORTHO05D007075 1.5e-74 283.5 248 63.7
RcHm_v2.0_Chr1g0363981 Rosa chinensis HOM05D005690 ORTHO05D007075 1.5e-74 283.5 248 61.7
Hma1.2p1_2080F.1_g313490 Hydrangea macrophylla HOM05D005690 ORTHO05D007075 2.0e-74 283.1 257 60.7
Potri.010G219000 Populus trichocarpa HOM05D005690 ORTHO05D007075 2.6e-74 282.7 232 64.7
Rhsim09G0153300 Rhododendron simsii HOM05D005690 ORTHO05D007075 2.6e-74 282.7 224 65.6
FAN01G0973 Fragaria x ananassa HOM05D005690 ORTHO05D007075 4.4e-74 282.0 246 61.4
TWI38G1302 Tripterygium wilfordii HOM05D005690 ORTHO05D007075 4.4e-74 282.0 245 62.4
Cfa001602 Carpinus fangiana HOM05D005690 ORTHO05D007075 5.8e-74 281.6 246 63.0
Hund19342 Selenicereus undatus HOM05D005690 ORTHO05D007075 7.6e-74 281.2 244 61.1
PSO384G2564 Papaver somniferum HOM05D005690 ORTHO05D007075 9.9e-74 280.8 243 61.3
SGA_v2.0_scaffold28G12052 Striga asiatica HOM05D005690 ORTHO05D007075 9.9e-74 280.8 242 62.0
Lj2g0014971 Lotus japonicus HOM05D005690 ORTHO05D007075 1.7e-73 280.0 254 61.0
arahy.Tifrunner.gnm1.ann1.08HL34 Arachis hypogaea HOM05D005690 ORTHO05D007075 2.2e-73 279.6 231 65.4
MELO3C002879.2 Cucumis melo HOM05D005690 ORTHO05D007075 2.2e-73 279.6 241 61.4
Sabra10G0169300 Salix brachista HOM05D005690 ORTHO05D007075 2.2e-73 279.6 220 66.8
HanXRQChr09g0246501 Helianthus annuus HOM05D005690 ORTHO05D007075 2.9e-73 279.3 250 63.2
Nn2g13015 Nelumbo nucifera HOM05D005690 ORTHO05D007075 2.9e-73 279.3 212 68.4
arahy.Tifrunner.gnm1.ann1.8E9GH8 Arachis hypogaea HOM05D005690 ORTHO05D007075 3.8e-73 278.9 230 65.2
MSTRG.373 Avicennia marina HOM05D005690 ORTHO05D007075 3.8e-73 278.9 246 61.8
Lsat_1_v5_gn_9_67140 Lactuca sativa HOM05D005690 ORTHO05D007075 3.8e-73 278.9 248 62.1
Lalb_Chr19g0129571 Lupinus albus HOM05D005690 ORTHO05D007075 3.8e-73 278.9 246 61.4
PSO339G2382 Papaver somniferum HOM05D005690 ORTHO05D007075 3.8e-73 278.9 243 60.5
PGR044G2452 Punica granatum HOM05D005690 ORTHO05D007075 3.8e-73 278.9 249 60.2
Nitab4.5_0000476g0050 Nicotiana tabacum HOM05D005690 ORTHO05D007075 4.9e-73 278.5 245 61.6
AUR62027946 Chenopodium quinoa HOM05D005690 ORTHO05D007075 1.4e-72 276.9 252 59.5
Aqoxy6G02013 Aquilegia oxysepala HOM05D005690 ORTHO05D007075 1.9e-72 276.6 245 62.4
AUR62020766 Chenopodium quinoa HOM05D005690 ORTHO05D007075 2.4e-72 276.2 247 61.1
Eucgr.J01111 Eucalyptus grandis HOM05D005690 ORTHO05D007075 4.2e-72 275.4 245 61.2
HPP92_003607 Vanilla planifolia HOM05D005690 ORTHO05D007075 4.2e-72 275.4 193 71.0
Ca_04676_v3 Cicer arietinum L. HOM05D005690 ORTHO05D007075 5.4e-72 275.0 252 61.5
CsaV3_5G025890 Cucumis sativus L. HOM05D005690 ORTHO05D007075 9.3e-72 274.2 242 59.1
MBI05_g11579_MAGBIO Magnolia biondii HOM05D005690 ORTHO05D007075 2.1e-71 273.1 193 71.0
Medtr6g033405 Medicago truncatula HOM05D005690 ORTHO05D007075 2.1e-71 273.1 236 62.3
Haze_16926 Corylus avellana HOM05D005690 ORTHO05D007075 2.7e-71 272.7 246 61.8
Nitab4.5_0000233g0230 Nicotiana tabacum HOM05D005690 ORTHO05D007075 6.0e-71 271.6 227 62.1
Migut.F01989 Erythranthe guttata HOM05D005690 ORTHO05D007075 7.8e-71 271.2 246 60.2
vmacro04884 Vaccinium macrocarpon HOM05D005690 ORTHO05D007075 7.8e-71 271.2 214 65.0
Hma1.2p1_0453F.1_g156020 Hydrangea macrophylla HOM05D005690 ORTHO05D007075 1.3e-70 270.4 220 65.0
Peaxi162Scf01175g00023 Petunia axillaris HOM05D005690 ORTHO05D007075 1.3e-70 270.4 235 60.9
Sed0019941 Sechium edule HOM05D005690 ORTHO05D007075 1.3e-70 270.4 238 60.9
HanXRQChr17g0563371 Helianthus annuus HOM05D005690 ORTHO05D007075 1.9e-69 266.5 191 72.3
ATR1159G074 Amborella trichopoda HOM05D005690 ORTHO05D007075 3.3e-69 265.8 237 59.5
Nitab4.5_0009003g0010 Nicotiana tabacum HOM05D005690 ORTHO05D007075 4.3e-69 265.4 186 71.0
EL10Ac2g03578 Beta vulgaris HOM05D005690 ORTHO05D007075 5.6e-69 265.0 191 69.1
SalBow4G1295 Salvia bowleyana HOM05D005690 ORTHO05D007075 2.1e-68 263.1 235 61.7
unitig_0.g529 Utricularia gibba HOM05D005690 ORTHO05D007075 1.1e-67 260.8 193 65.8
Zm00001eb064810 Zea mays HOM05D005690 ORTHO05D007075 3.1e-67 259.2 185 69.7
CDE04G0636 Ceratophyllum demersum HOM05D005690 ORTHO05D007075 5.3e-67 258.5 192 67.2
Sed0011214 Sechium edule HOM05D005690 ORTHO05D007075 1.5e-66 256.9 242 58.3
SalBow3G1299 Salvia bowleyana HOM05D005690 ORTHO05D007075 2.6e-66 256.1 249 56.6
Ah.16g108410 Amaranthus hybridus HOM05D005690 ORTHO05D007075 5.8e-66 255.0 230 60.0
Rhsim03G0123000 Rhododendron simsii HOM05D005690 ORTHO05D007075 1.4e-64 250.4 225 60.0
Os03g0853800 Oryza sativa ssp. japonica HOM05D005690 ORTHO05D007075 2.4e-64 249.6 152 79.6
ClCG09G020510 Citrullus lanatus HOM05D005690 ORTHO05D007075 3.5e-63 245.7 217 59.0
SEGI_15078 Sequoiadendron giganteum HOM05D005690 ORTHO05D007075 4.6e-63 245.4 252 52.8
CDE07G1130 Ceratophyllum demersum HOM05D005690 ORTHO05D007075 6.2e-60 235.0 152 74.3
Eucgr.J01110 Eucalyptus grandis HOM05D005690 ORTHO05D007075 8.1e-60 234.6 237 54.9
BcaB01g03882 Brassica carinata HOM05D005690 ORTHO05D007075 1.1e-59 234.2 111 100.0
CSS0000246 Camellia sinensis var. sinensis HOM05D005690 ORTHO05D007075 3.2e-56 222.6 205 59.5
Sc06g0001780 Simmondsia chinensis HOM05D005690 ORTHO05D007075 6.9e-51 204.9 120 78.3
Peaxi162Scf00108g00173 Petunia axillaris HOM05D005690 ORTHO05D007075 7.6e-50 201.4 121 76.0
Lj8C97T4 Lonicera japonica HOM05D005690 ORTHO05D007075 1.3e-49 200.7 121 78.5
AagrBONN_evm.TU.Sc2ySwM_362.1612 Anthoceros agrestis HOM05D005690 ORTHO05D007075 1.4e-43 180.6 139 59.7
Psat1g099440 Pisum sativum HOM05D005690 ORTHO05D007075 7.6e-42 174.9 153 60.1
CiPaw.01G275500 Carya illinoinensis HOM05D005690 ORTHO05D007075 1.7e-41 173.7 122 68.9
Mapoly0033s0041 Marchantia polymorpha HOM05D005690 ORTHO05D007075 2.2e-41 173.3 221 43.4
Mapoly0033s0042 Marchantia polymorpha HOM05D005690 ORTHO05D007075 1.2e-39 167.5 202 43.6
Pp3c10_15170 Physcomitrium patens HOM05D005690 ORTHO05D007075 3.9e-38 162.5 137 54.7
Nitab4.5_0003072g0050 Nicotiana tabacum HOM05D005690 ORTHO05D007075 2.8e-36 156.4 182 46.7
Psat2g052960 Pisum sativum HOM05D004553 ORTHO05D005426 1.4e-30 137.5 173 43.9
SMO239G0063 Selaginella moellendorffii HOM05D005690 ORTHO05D007075 2.2e-25 120.2 172 35.5
Lalb_Chr01g0010161 Lupinus albus HOM05D005690 ORTHO05D007075 7.2e-24 115.2 68 76.5
Cre12.g540051 Chlamydomonas reinhardtii HOM05D005690 ORTHO05D007075 7.2e-16 88.6 150 30.0
Lalb_Chr01g0010151 Lupinus albus HOM05D005690 ORTHO05D007075 6.3e-12 75.5 119 45.4
MCO03G451 Micromonas commoda HOM05D005690 ORTHO05D007075 9.1e-11 71.6 129 34.1
CDE07G0610 Ceratophyllum demersum HOM05D005690 ORTHO05D007075 2.0e-10 70.5 115 41.7
Nn2g10688 Nelumbo nucifera HOM05D005690 ORTHO05D007075 8.0e-07 58.5 103 40.8


User provided reference genes

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