Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p22460 Brassica napus HOM05D004088 ORTHO05D004736 0.0e+00 1325.8 817 100.0
BolC3t14642H Brassica oleracea HOM05D004088 ORTHO05D004736 0.0e+00 1309.7 818 91.6
BraA03t11181Z Brassica rapa HOM05D004088 ORTHO05D004736 0.0e+00 1226.5 819 91.1
A03p19270 Brassica napus HOM05D004088 ORTHO05D004736 0.0e+00 1216.8 819 90.1
BcaC01g05766 Brassica carinata HOM05D004088 ORTHO05D004736 1.5e-286 989.6 817 82.1
Thhalv10017542m.g Eutrema salsugineum HOM05D004088 ORTHO05D004736 5.6e-270 934.5 745 71.9
AL4G30720 Arabidopsis lyrata HOM05D004088 ORTHO05D004736 4.6e-256 888.3 832 69.1
Sp4g17030 Schrenkiella parvula HOM05D004088 ORTHO05D004736 2.1e-253 879.4 834 65.8
Carub.0004s1642 Capsella rubella HOM05D004088 ORTHO05D004736 3.6e-253 878.6 829 64.4
AT2G34730 Arabidopsis thaliana HOM05D004088 ORTHO05D004736 9.3e-249 864.0 823 64.4
CARHR128890 Cardamine hirsuta HOM05D004088 ORTHO05D004736 6.9e-244 847.8 822 64.4
Aa31LG10G6600 Aethionema arabicum HOM05D004088 ORTHO05D004736 3.3e-206 722.6 828 56.9
THA.LOC104814348 Tarenaya hassleriana HOM05D004088 ORTHO05D004736 7.3e-153 545.4 878 45.8
Aa31LG6G11780 Aethionema arabicum HOM05D004088 ORTHO05D004736 9.3e-108 395.6 664 42.5
Sp1g26400 Schrenkiella parvula HOM05D004088 ORTHO05D004736 2.4e-103 380.9 638 40.8
BcaB07g32689 Brassica carinata HOM05D004088 ORTHO05D004736 8.5e-93 345.9 800 38.4
Thecc.06G002600 Theobroma cacao HOM05D004088 ORTHO05D004736 4.2e-92 343.6 865 31.7
C05p29550 Brassica napus HOM05D004088 ORTHO05D004736 1.8e-90 338.2 595 42.2
BcaC05g27074 Brassica carinata HOM05D004088 ORTHO05D004736 4.4e-89 333.6 595 42.0
BolC5t31686H Brassica oleracea HOM05D004088 ORTHO05D004736 4.4e-89 333.6 595 42.0
BcaB07g32691 Brassica carinata HOM05D004088 ORTHO05D004736 9.7e-89 332.4 802 37.7
A09p35910 Brassica napus HOM05D004088 ORTHO05D004736 2.8e-88 330.9 577 41.8
BraA09t39116Z Brassica rapa HOM05D004088 ORTHO05D004736 1.1e-87 328.9 514 45.1
BcaB07g32665 Brassica carinata HOM05D004088 ORTHO05D004736 2.4e-87 327.8 804 37.7
Duzib235G1173 Durio zibethinus HOM05D004088 ORTHO05D004736 7.0e-87 326.2 867 31.8
Gohir.D10G004300 Gossypium hirsutum HOM05D004088 ORTHO05D004736 9.1e-87 325.9 872 33.4
Gohir.A10G004300 Gossypium hirsutum HOM05D004088 ORTHO05D004736 1.8e-82 311.6 865 31.1
Gorai.011G004700 Gossypium raimondii HOM05D004088 ORTHO05D004736 4.4e-81 307.0 865 35.4
Potri.011G164400 Populus trichocarpa HOM05D004088 ORTHO05D004736 4.4e-81 307.0 884 30.1
Cfa000808 Carpinus fangiana HOM05D004088 ORTHO05D004736 7.0e-79 299.7 876 31.4
Lj2C329T10 Lonicera japonica HOM05D004088 ORTHO05D004736 2.7e-78 297.7 856 30.6
QL05p062418 Quercus lobata HOM05D004088 ORTHO05D004736 4.5e-78 297.0 888 35.2
Duzib192G0456 Durio zibethinus HOM05D004088 ORTHO05D004736 7.7e-78 296.2 852 31.1
Sabra11G0140800 Salix brachista HOM05D004088 ORTHO05D004736 1.3e-77 295.4 876 29.2
Manes.14G123600 Manihot esculenta HOM05D004088 ORTHO05D004736 2.2e-77 294.7 874 30.7
Actinidia32361 Actinidia chinensis HOM05D004088 ORTHO05D004736 2.3e-74 284.6 865 30.4
TWI75G0217 Tripterygium wilfordii HOM05D004088 ORTHO05D004736 2.3e-74 284.6 879 29.4
COL.COLO4_26840 Corchorus olitorius HOM05D004088 ORTHO05D004736 6.8e-74 283.1 870 30.2
CANSAT35G2036 Cannabis sativa HOM05D004088 ORTHO05D004736 4.8e-72 276.9 894 31.0
Carub.0001s2877 Capsella rubella HOM05D004088 ORTHO05D004736 1.4e-71 275.4 597 36.5
Ciclev10014183m.g Citrus clementina HOM05D004088 ORTHO05D004736 7.0e-71 273.1 791 34.9
CiPaw.10G109300 Carya illinoinensis HOM05D004088 ORTHO05D004736 1.9e-68 265.0 887 29.4
TWI18G0713 Tripterygium wilfordii HOM05D004088 ORTHO05D004736 2.5e-68 264.6 868 29.0
ClCG01G025190 Citrullus lanatus HOM05D004088 ORTHO05D004736 5.5e-68 263.5 799 30.4
MD10G1252800 Malus domestica HOM05D004088 ORTHO05D004736 1.4e-66 258.8 899 27.9
Medtr2g030300 Medicago truncatula HOM05D004088 ORTHO05D004736 1.4e-66 258.8 860 29.0
Lalb_Chr20g0120071 Lupinus albus HOM05D004088 ORTHO05D004736 3.0e-66 257.7 862 29.6
Lalb_Chr18g0058001 Lupinus albus HOM05D004088 ORTHO05D004736 8.8e-66 256.1 879 28.8
TAR629G1981 Trochodendron aralioides HOM05D004088 ORTHO05D004736 2.6e-65 254.6 877 32.2
Potri.001G466800 Populus trichocarpa HOM05D004088 ORTHO05D004736 3.4e-65 254.2 843 29.7
Phvul.006G128000 Phaseolus vulgaris HOM05D004088 ORTHO05D004736 8.3e-64 249.6 862 28.3
Sed0022554 Sechium edule HOM05D004088 ORTHO05D004736 1.4e-63 248.8 866 28.6
Haze_05860 Corylus avellana HOM05D004088 ORTHO05D004736 9.2e-63 246.1 712 34.4
Haze_05865 Corylus avellana HOM05D004088 ORTHO05D004736 9.2e-63 246.1 712 34.4
Sed0022133 Sechium edule HOM05D004088 ORTHO05D004736 1.6e-62 245.4 884 27.4
Atru.chr10.842 Acer truncatum HOM05D004088 ORTHO05D004736 2.7e-62 244.6 886 28.7
GSVIVG01021660001 Vitis vinifera HOM05D004088 ORTHO05D004736 3.5e-62 244.2 865 29.4
Actinidia33710 Actinidia chinensis HOM05D004088 ORTHO05D004736 1.0e-61 242.7 802 27.6
Peaxi162Scf00395g00111 Petunia axillaris HOM05D004088 ORTHO05D004736 3.8e-61 240.7 889 27.3
CsaV3_6G052390 Cucumis sativus L. HOM05D004088 ORTHO05D004736 2.5e-60 238.0 795 28.9
Dinv10790 Davidia involucrata HOM05D004088 ORTHO05D004736 5.6e-60 236.9 897 27.8
Manes.06G068100 Manihot esculenta HOM05D004088 ORTHO05D004736 5.6e-60 236.9 885 27.8
MELO3C007071.2 Cucumis melo HOM05D004088 ORTHO05D004736 2.1e-59 235.0 862 27.5
Prupe.4G090700 Prunus persica HOM05D004088 ORTHO05D004736 2.8e-59 234.6 924 26.9
PGSC0003DMG400021120 Solanum tuberosum HOM05D004088 ORTHO05D004736 3.6e-59 234.2 888 27.4
Psat1g167360 Pisum sativum HOM05D004088 ORTHO05D004736 4.7e-59 233.8 862 27.1
Ca_00845_v3 Cicer arietinum L. HOM05D004088 ORTHO05D004736 8.0e-59 233.0 860 28.7
TPR.G26329 Trifolium pratense HOM05D004088 ORTHO05D004736 1.0e-58 232.6 864 29.5
Solyc02g069940.4 Solanum lycopersicum HOM05D004088 ORTHO05D004736 3.0e-58 231.1 883 27.4
Sopen02g019080 Solanum pennellii HOM05D004088 ORTHO05D004736 4.0e-58 230.7 883 27.0
Eucgr.E02503 Eucalyptus grandis HOM05D004088 ORTHO05D004736 1.2e-57 229.2 897 27.5
FAN16G0404 Fragaria x ananassa HOM05D004088 ORTHO05D004736 1.2e-57 229.2 831 27.9
Hma1.2p1_0067F.1_g036970 Hydrangea macrophylla HOM05D004088 ORTHO05D004736 1.2e-57 229.2 861 27.5
Nitab4.5_0001583g0030 Nicotiana tabacum HOM05D004088 ORTHO05D004736 1.5e-57 228.8 761 29.7
arahy.Tifrunner.gnm1.ann1.845J24 Arachis hypogaea HOM05D004088 ORTHO05D004736 4.4e-57 227.3 800 29.2
CiPaw.09G141900 Carya illinoinensis HOM05D004088 ORTHO05D004736 4.4e-57 227.3 736 29.9
FAN11G0925 Fragaria x ananassa HOM05D004088 ORTHO05D004736 9.8e-57 226.1 818 27.9
arahy.Tifrunner.gnm1.ann1.JZ5PNZ Arachis hypogaea HOM05D004088 ORTHO05D004736 2.2e-56 224.9 774 30.1
Glyma.09G024600 Glycine max HOM05D004088 ORTHO05D004736 2.9e-56 224.6 873 27.4
RcHm_v2.0_Chr5g0016081 Rosa chinensis HOM05D004088 ORTHO05D004736 3.7e-56 224.2 908 27.4
VMungo0540G1975 Vigna mungo HOM05D004088 ORTHO05D004736 4.9e-56 223.8 643 30.5
Aqoxy1G01578 Aquilegia oxysepala HOM05D004088 ORTHO05D004736 8.3e-56 223.0 774 29.2
FvH4_3g10170 Fragaria vesca HOM05D004088 ORTHO05D004736 1.1e-55 222.6 820 27.7
CAN.G79.31 Capsicum annuum HOM05D004088 ORTHO05D004736 2.0e-54 218.4 889 27.3
Glyma.15G130600 Glycine max HOM05D004088 ORTHO05D004736 7.8e-54 216.5 872 27.1
Oeu060307.1 Olea europaea HOM05D004088 ORTHO05D004736 1.0e-53 216.1 789 27.2
Rhsim13G0121800 Rhododendron simsii HOM05D004088 ORTHO05D004736 1.0e-53 216.1 855 26.9
MD05G1272700 Malus domestica HOM05D004088 ORTHO05D004736 3.0e-53 214.5 879 25.8
CSS0022324 Camellia sinensis var. sinensis HOM05D004088 ORTHO05D004736 6.6e-53 213.4 885 27.3
Lj6g0019238 Lotus japonicus HOM05D004088 ORTHO05D004736 9.5e-52 209.5 847 27.6
PGSC0003DMG400028032 Solanum tuberosum HOM05D004088 ORTHO05D004736 1.8e-50 205.3 885 25.9
Cpa.g.sc1123.1 Carica papaya HOM05D004088 ORTHO05D004736 3.1e-50 204.5 662 29.8
Cc09_g07900 Coffea canephora HOM05D004088 ORTHO05D004736 5.2e-50 203.8 886 27.3
Sc24g0002610 Simmondsia chinensis HOM05D004088 ORTHO05D004736 4.4e-49 200.7 766 26.4
Migut.H01326 Erythranthe guttata HOM05D004088 ORTHO05D004736 7.5e-49 199.9 879 26.3
AUR62035797 Chenopodium quinoa HOM05D004088 ORTHO05D004736 9.8e-49 199.5 821 30.7
SGA_v2.0_scaffold106G30673 Striga asiatica HOM05D004088 ORTHO05D004736 1.7e-48 198.7 875 25.8
FAN21G0524 Fragaria x ananassa HOM05D004088 ORTHO05D004736 6.4e-48 196.8 823 25.9
Solyc02g024000.4 Solanum lycopersicum HOM05D004088 ORTHO05D004736 1.1e-47 196.1 691 27.4
Ah.14g086140 Amaranthus hybridus HOM05D002312 ORTHO05D006455 1.4e-47 195.7 763 26.2
Sopen02g006710 Solanum pennellii HOM05D004088 ORTHO05D004736 1.9e-47 195.3 896 25.1
SGA_v2.0_scaffold51G18657 Striga asiatica HOM05D004088 ORTHO05D007693 5.4e-47 193.7 821 26.4
MSTRG.14799 Avicennia marina HOM05D004088 ORTHO05D004736 1.2e-46 192.6 860 25.5
vmacro03381 Vaccinium macrocarpon HOM05D004088 ORTHO05D004736 4.6e-46 190.7 772 25.5
FAN25G3211 Fragaria x ananassa HOM05D004088 ORTHO05D004736 6.0e-46 190.3 818 25.7
Lsat_1_v5_gn_2_8701 Lactuca sativa HOM05D004088 ORTHO05D004736 7.8e-46 189.9 748 26.7
MBI18_g11295_MAGBIO Magnolia biondii HOM05D004088 ORTHO05D004736 7.8e-46 189.9 811 27.3
Nitab4.5_0001225g0110 Nicotiana tabacum HOM05D004088 ORTHO05D004736 1.9e-44 185.3 780 27.2
MSTRG.13273 Avicennia marina HOM05D004088 ORTHO05D004736 2.0e-41 175.3 816 25.6
RcHm_v2.0_Chr5g0016211 Rosa chinensis HOM05D004088 ORTHO05D004736 4.4e-41 174.1 782 27.2
PSO541G5923 Papaver somniferum HOM05D004088 ORTHO05D004736 5.8e-41 173.7 703 26.0
Oeu058484.1 Olea europaea HOM05D004088 ORTHO05D004736 9.2e-39 166.4 712 27.8
TAR627G0400 Trochodendron aralioides HOM05D004088 ORTHO05D004736 2.3e-37 161.8 584 28.6
HanXRQChr14g0430221 Helianthus annuus HOM05D004088 ORTHO05D004736 8.6e-37 159.8 834 23.7
RcHm_v2.0_Chr5g0016261 Rosa chinensis HOM05D004088 ORTHO05D004736 4.3e-36 157.5 523 28.3
Prupe.6G066700 Prunus persica HOM05D004088 ORTHO05D004736 9.5e-36 156.4 748 26.6
Sabra16G0316600 Salix brachista HOM05D004088 ORTHO05D004736 4.7e-35 154.1 721 26.6
EL10Ac8g19551 Beta vulgaris HOM05D004088 ORTHO05D004736 6.2e-35 153.7 758 25.6
Eucgr.E02499 Eucalyptus grandis HOM05D004088 ORTHO05D004736 1.2e-33 149.4 708 27.5
ECA238G4729 Erigeron canadensis HOM05D004088 ORTHO05D004736 5.8e-33 147.1 817 27.1
Prupe.6G009000 Prunus persica HOM05D004088 ORTHO05D004736 9.9e-33 146.4 444 30.2
DCAR_003851 Daucus carota HOM05D004088 ORTHO05D004736 2.4e-31 141.7 828 25.6
MBI02_g32065_MAGBIO Magnolia biondii HOM05D004088 ORTHO05D004736 1.0e-29 136.3 869 25.0
Nn3g20183 Nelumbo nucifera HOM05D004088 ORTHO05D004736 9.6e-28 129.8 848 23.6
HPP92_017711 Vanilla planifolia HOM05D004088 ORTHO05D004736 1.6e-27 129.0 783 22.9
ATR0165G056 Amborella trichopoda HOM05D004088 ORTHO05D004736 1.9e-23 115.5 890 22.9
PSO675G0514 Papaver somniferum HOM05D004088 ORTHO05D004736 4.6e-22 110.9 704 22.9
BcaC05g27073 Brassica carinata HOM05D000169 ORTHO05D007693 1.3e-21 109.4 166 44.6
AUR62027558 Chenopodium quinoa HOM05D004088 ORTHO05D004736 1.7e-21 109.0 602 26.9
unitig_61.g26083 Utricularia gibba HOM05D004088 ORTHO05D004736 8.7e-21 106.7 848 23.7
MBI02_g16954_MAGBIO Magnolia biondii HOM05D004088 ORTHO05D004736 3.6e-19 101.3 543 25.2
CDE03G0099 Ceratophyllum demersum HOM05D004088 ORTHO05D004736 1.2e-17 96.3 699 22.7
MBI02_g32067_MAGBIO Magnolia biondii HOM05D004088 ORTHO05D004736 1.9e-15 89.0 485 24.9
Os09g0133800 Oryza sativa ssp. japonica HOM05D004088 ORTHO05D004736 9.3e-15 86.7 508 24.6
Dinv01742 Davidia involucrata HOM05D004088 ORTHO05D004736 2.7e-14 85.1 255 30.6
CDE04G2970 Ceratophyllum demersum HOM05D004088 ORTHO05D004736 6.0e-14 84.0 377 25.7
HPP92_026552 Vanilla planifolia HOM05D004088 ORTHO05D004736 6.7e-13 80.5 285 28.8
A09p21730 Brassica napus HOM05D004950 ORTHO05D004838 2.5e-12 78.6 44 79.5
Zm00001eb261820 Zea mays HOM05D004088 ORTHO05D004736 2.5e-12 78.6 472 24.8
Os03g0784600 Oryza sativa ssp. japonica HOM05D004088 ORTHO05D004736 1.3e-11 76.3 245 25.7
BraA09t37775Z Brassica rapa HOM05D004950 ORTHO05D004838 1.6e-11 75.9 44 77.3
CDE06G1544 Ceratophyllum demersum HOM05D004088 ORTHO05D004736 2.8e-11 75.1 366 23.2
Nitab4.5_0002819g0030 Nicotiana tabacum HOM05D004088 ORTHO05D004736 1.4e-10 72.8 312 25.3
Zm00001eb420620 Zea mays HOM05D004088 ORTHO05D004736 1.2e-09 69.7 587 21.5
Nitab4.5_0004734g0030 Nicotiana tabacum HOM05D004088 ORTHO05D004736 1.7e-08 65.9 313 25.2
SHI20695 Sapria himalayana HOM05D004088 ORTHO05D004736 2.2e-08 65.5 544 23.7
Aa31sc280G50 Aethionema arabicum HOM05D004088 ORTHO05D004736 5.5e-07 60.8 110 40.0
Zm00001eb299950 Zea mays HOM05D004088 ORTHO05D004736 2.7e-06 58.5 585 21.7
Os07g0147800 Oryza sativa ssp. japonica HOM05D004088 ORTHO05D004736 4.6e-06 57.8 476 19.7


User provided reference genes

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