Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p22060 Brassica napus HOM05D003630 ORTHO05D004151 1.5e-55 219.2 103 100.0
BolC3t14590H Brassica oleracea HOM05D003630 ORTHO05D004151 1.1e-50 203.0 94 100.0
BcaB01g03917 Brassica carinata HOM05D003630 ORTHO05D004151 4.7e-49 197.6 97 96.9
BcaC01g05821 Brassica carinata HOM05D003630 ORTHO05D004151 4.7e-49 197.6 97 96.9
BcaC01g05822 Brassica carinata HOM05D003630 ORTHO05D004151 4.7e-49 197.6 97 96.9
A03p18920 Brassica napus HOM05D003630 ORTHO05D004151 4.7e-49 197.6 97 96.9
BraA03t11151Z Brassica rapa HOM05D003630 ORTHO05D004151 4.7e-49 197.6 97 96.9
Carub.0004s1550 Capsella rubella HOM05D003630 ORTHO05D004151 8.9e-48 193.4 97 93.8
C04p15210 Brassica napus HOM05D003630 ORTHO05D004151 3.4e-47 191.4 96 93.8
BolC4t23094H Brassica oleracea HOM05D003630 ORTHO05D004151 3.4e-47 191.4 96 93.8
Sp4g16220 Schrenkiella parvula HOM05D003630 ORTHO05D004151 3.4e-47 191.4 97 91.8
A05p11750 Brassica napus HOM05D003630 ORTHO05D004151 4.4e-47 191.0 96 93.8
BraA05t20119Z Brassica rapa HOM05D003630 ORTHO05D004151 4.4e-47 191.0 96 93.8
BcaB02g10597 Brassica carinata HOM05D003630 ORTHO05D004151 5.8e-47 190.7 96 92.7
BcaC02g11461 Brassica carinata HOM05D003630 ORTHO05D004151 9.8e-47 189.9 96 92.7
AL4G29600 Arabidopsis lyrata HOM05D003630 ORTHO05D004151 2.2e-46 188.7 97 90.7
AT2G33830 Arabidopsis thaliana HOM05D003630 ORTHO05D004151 1.2e-44 183.0 97 90.7
Thhalv10017461m.g Eutrema salsugineum HOM05D003630 ORTHO05D004151 1.1e-40 169.9 97 82.5
CARHR127940 Cardamine hirsuta HOM05D003630 ORTHO05D004151 8.9e-40 166.8 98 80.6
Aa31sc652G110 Aethionema arabicum HOM05D003630 ORTHO05D004151 3.7e-38 161.4 98 75.5
Aa31sc652G20 Aethionema arabicum HOM05D003630 ORTHO05D004151 3.7e-38 161.4 98 75.5
THA.LOC104814224 Tarenaya hassleriana HOM05D003630 ORTHO05D004151 5.4e-29 131.0 106 63.2
Aa31sc86G60 Aethionema arabicum HOM05D003630 ORTHO05D004151 1.0e-27 126.7 100 64.0
Carub.0001s2678 Capsella rubella HOM05D003630 ORTHO05D004151 1.3e-27 126.3 105 59.0
AT1G28330 Arabidopsis thaliana HOM05D003630 ORTHO05D004151 1.7e-27 125.9 106 58.5
Gohir.A05G159800 Gossypium hirsutum HOM05D003630 ORTHO05D004151 2.8e-25 118.6 103 59.2
AL1G41920 Arabidopsis lyrata HOM05D003630 ORTHO05D004151 6.2e-25 117.5 107 55.1
Gohir.D05G162500 Gossypium hirsutum HOM05D003630 ORTHO05D004151 6.2e-25 117.5 103 59.2
Sp1g24570 Schrenkiella parvula HOM05D003630 ORTHO05D004151 8.1e-25 117.1 103 57.3
Thecc.06G183500 Theobroma cacao HOM05D003630 ORTHO05D004151 8.1e-25 117.1 109 54.1
CARHR027820 Cardamine hirsuta HOM05D003630 ORTHO05D004151 1.8e-24 115.9 104 55.8
Cc02_g13650 Coffea canephora HOM05D003630 ORTHO05D004151 2.4e-24 115.5 110 53.6
Atru.chr10.1820 Acer truncatum HOM05D003630 ORTHO05D004151 3.1e-24 115.2 104 51.0
Atru.chr10.1837 Acer truncatum HOM05D003630 ORTHO05D004151 3.1e-24 115.2 104 51.0
AT5G44300 Arabidopsis thaliana HOM05D003630 ORTHO05D004151 5.2e-24 114.4 102 55.9
Thhalv10009086m.g Eutrema salsugineum HOM05D003630 ORTHO05D004151 5.2e-24 114.4 107 52.3
COL.COLO4_31436 Corchorus olitorius HOM05D003630 ORTHO05D004151 6.8e-24 114.0 102 52.9
AL8G15690 Arabidopsis lyrata HOM05D003630 ORTHO05D004151 8.9e-24 113.6 102 55.9
Gorai.009G167500 Gossypium raimondii HOM05D003630 ORTHO05D004151 8.9e-24 113.6 102 58.8
TAR626G1897 Trochodendron aralioides HOM05D003630 ORTHO05D004151 8.9e-24 113.6 104 54.8
BraA02t07868Z Brassica rapa HOM05D003630 ORTHO05D004151 1.2e-23 113.2 98 56.1
Sp2g09130 Schrenkiella parvula HOM05D003630 ORTHO05D004151 1.2e-23 113.2 98 55.1
Aa31LG9G8870 Aethionema arabicum HOM05D003630 ORTHO05D004151 1.5e-23 112.8 95 55.8
BcaC05g26841 Brassica carinata HOM05D003630 ORTHO05D004151 1.5e-23 112.8 102 51.0
Nitab4.5_0003487g0100 Nicotiana tabacum HOM05D003630 ORTHO05D004151 1.5e-23 112.8 109 53.2
PGR004G0839 Punica granatum HOM05D003630 ORTHO05D004151 1.5e-23 112.8 107 52.3
MBI02_g32444_MAGBIO Magnolia biondii HOM05D003630 ORTHO05D004151 2.0e-23 112.5 109 53.2
BcaC03g16649 Brassica carinata HOM05D003630 ORTHO05D004151 2.6e-23 112.1 98 55.1
C02p44910 Brassica napus HOM05D003630 ORTHO05D004151 2.6e-23 112.1 98 55.1
BolC2t10526H Brassica oleracea HOM05D003630 ORTHO05D004151 2.6e-23 112.1 98 55.1
Ciclev10017162m.g Citrus clementina HOM05D003630 ORTHO05D004151 2.6e-23 112.1 106 54.7
Carub.0008s0422 Capsella rubella HOM05D003630 ORTHO05D004151 3.4e-23 111.7 100 55.0
CiPaw.10G051200 Carya illinoinensis HOM05D003630 ORTHO05D004151 4.4e-23 111.3 106 53.8
PGSC0003DMG400029732 Solanum tuberosum HOM05D003630 ORTHO05D004151 5.8e-23 110.9 104 50.0
BcaB07g32449 Brassica carinata HOM05D003630 ORTHO05D004151 7.6e-23 110.5 102 52.9
Thhalv10003427m.g Eutrema salsugineum HOM05D003630 ORTHO05D004151 7.6e-23 110.5 97 56.7
MSTRG.15866 Avicennia marina HOM05D003630 ORTHO05D004151 9.9e-23 110.2 104 54.8
A02p28330 Brassica napus HOM05D003630 ORTHO05D004151 1.3e-22 109.8 98 54.1
Lsat_1_v5_gn_1_124360 Lactuca sativa HOM05D003630 ORTHO05D004151 1.3e-22 109.8 101 56.4
CSS0033873 Camellia sinensis var. sinensis HOM05D003630 ORTHO05D004151 2.2e-22 109.0 107 52.3
Potri.004G047100 Populus trichocarpa HOM05D003630 ORTHO05D004151 2.2e-22 109.0 111 48.6
BolC5t31435H Brassica oleracea HOM05D003630 ORTHO05D004151 2.9e-22 108.6 101 50.5
CiPaw.04G030300 Carya illinoinensis HOM05D003630 ORTHO05D004151 2.9e-22 108.6 101 55.4
CiPaw.09G062300 Carya illinoinensis HOM05D003630 ORTHO05D004151 2.9e-22 108.6 101 55.4
Solyc02g077880.3 Solanum lycopersicum HOM05D003630 ORTHO05D004151 3.8e-22 108.2 103 48.5
Sopen02g022730 Solanum pennellii HOM05D003630 ORTHO05D004151 3.8e-22 108.2 103 48.5
Dinv17335 Davidia involucrata HOM05D003630 ORTHO05D004151 4.9e-22 107.8 108 53.7
Manes.16G030000 Manihot esculenta HOM05D003630 ORTHO05D004151 4.9e-22 107.8 105 51.4
TAR624G0603 Trochodendron aralioides HOM05D003630 ORTHO05D004151 4.9e-22 107.8 99 54.5
CSS0037340 Camellia sinensis var. sinensis HOM05D003630 ORTHO05D004151 6.4e-22 107.5 110 49.1
vmacro15923 Vaccinium macrocarpon HOM05D003630 ORTHO05D004151 8.4e-22 107.1 109 56.9
A09p37730 Brassica napus HOM05D003630 ORTHO05D004151 1.1e-21 106.7 104 52.9
C05p27220 Brassica napus HOM05D003630 ORTHO05D004151 1.1e-21 106.7 104 52.9
BraA09t39285Z Brassica rapa HOM05D003630 ORTHO05D004151 1.1e-21 106.7 104 52.9
Dinv40586 Davidia involucrata HOM05D003630 ORTHO05D004151 1.1e-21 106.7 107 50.5
Cpa.g.sc373.3 Carica papaya HOM05D003630 ORTHO05D004151 1.4e-21 106.3 104 51.9
CDE11G0243 Ceratophyllum demersum HOM05D003630 ORTHO05D004151 1.4e-21 106.3 103 52.4
Migut.H01476 Erythranthe guttata HOM05D003630 ORTHO05D004151 1.4e-21 106.3 109 54.1
TWI38G1513 Tripterygium wilfordii HOM05D003630 ORTHO05D004151 1.9e-21 105.9 105 52.4
QL05p041782 Quercus lobata HOM05D003630 ORTHO05D004151 2.4e-21 105.5 104 51.9
PGSC0003DMG400012826 Solanum tuberosum HOM05D003630 ORTHO05D004151 2.4e-21 105.5 112 49.1
ATR0752G193 Amborella trichopoda HOM05D003630 ORTHO05D004151 3.2e-21 105.1 105 51.4
Prupe.4G050800 Prunus persica HOM05D003630 ORTHO05D004151 3.2e-21 105.1 101 56.4
Duzib160G0312 Durio zibethinus HOM05D003630 ORTHO05D004151 4.2e-21 104.8 100 54.0
Duzib235G1039 Durio zibethinus HOM05D003630 ORTHO05D004151 4.2e-21 104.8 105 53.3
RcHm_v2.0_Chr5g0008921 Rosa chinensis HOM05D003630 ORTHO05D004151 4.2e-21 104.8 103 53.4
HPP92_018480 Vanilla planifolia HOM05D003630 ORTHO05D004151 4.2e-21 104.8 105 49.5
HPP92_018482 Vanilla planifolia HOM05D003630 ORTHO05D004151 4.2e-21 104.8 105 49.5
CDE05G2086 Ceratophyllum demersum HOM05D003630 ORTHO05D004151 5.4e-21 104.4 103 50.5
Hma1.2p1_0208F.1_g088370 Hydrangea macrophylla HOM05D003630 ORTHO05D004151 5.4e-21 104.4 110 49.1
Manes.17G047900 Manihot esculenta HOM05D003630 ORTHO05D004151 9.2e-21 103.6 103 52.4
GSVIVG01021092001 Vitis vinifera HOM05D003630 ORTHO05D004151 9.2e-21 103.6 106 50.0
Nitab4.5_0000516g0130 Nicotiana tabacum HOM05D003630 ORTHO05D004151 1.2e-20 103.2 110 50.0
arahy.Tifrunner.gnm1.ann1.H8XLFU Arachis hypogaea HOM05D003630 ORTHO05D004151 1.6e-20 102.8 101 56.4
arahy.Tifrunner.gnm1.ann1.S1G93A Arachis hypogaea HOM05D003630 ORTHO05D004151 1.6e-20 102.8 101 56.4
Lsat_1_v5_gn_7_20981 Lactuca sativa HOM05D003630 ORTHO05D004151 2.1e-20 102.4 102 50.0
Actinidia07592 Actinidia chinensis HOM05D003630 ORTHO05D004151 2.7e-20 102.1 109 49.5
HanXRQChr04g0123791 Helianthus annuus HOM05D003630 ORTHO05D004151 4.6e-20 101.3 104 51.9
Peaxi162Scf01100g00009 Petunia axillaris HOM05D003630 ORTHO05D004151 4.6e-20 101.3 101 48.5
Gorai.010G155600 Gossypium raimondii HOM05D003630 ORTHO05D004151 6.0e-20 100.9 95 48.4
PGR042G3375 Punica granatum HOM05D003630 ORTHO05D004151 6.0e-20 100.9 99 54.5
Aqoxy1G02347 Aquilegia oxysepala HOM05D003630 ORTHO05D004151 7.8e-20 100.5 102 47.1
Lj6g0013661 Lotus japonicus HOM05D003630 ORTHO05D004151 7.8e-20 100.5 101 54.5
unitig_749.g13657 Utricularia gibba HOM05D003630 ORTHO05D004151 7.8e-20 100.5 103 52.4
ECA236G4733 Erigeron canadensis HOM05D003630 ORTHO05D004151 1.0e-19 100.1 104 50.0
Nn1g04163 Nelumbo nucifera HOM05D003630 ORTHO05D004151 1.0e-19 100.1 104 47.1
Solyc03g006360.3 Solanum lycopersicum HOM05D003630 ORTHO05D004151 1.0e-19 100.1 113 46.9
TWI38G1867 Tripterygium wilfordii HOM05D003630 ORTHO05D004151 1.0e-19 100.1 104 51.0
MSTRG.13203 Avicennia marina HOM05D003630 ORTHO05D004151 1.3e-19 99.8 103 50.5
Gohir.A06G129700 Gossypium hirsutum HOM05D003630 ORTHO05D004151 1.3e-19 99.8 94 48.9
Gohir.D06G133900 Gossypium hirsutum HOM05D003630 ORTHO05D004151 1.3e-19 99.8 94 48.9
Migut.M01120 Erythranthe guttata HOM05D003630 ORTHO05D004151 1.7e-19 99.4 108 50.0
Cfa000510 Carpinus fangiana HOM05D003630 ORTHO05D004151 3.0e-19 98.6 108 50.0
MELO3C007269.2 Cucumis melo HOM05D003630 ORTHO05D004151 3.0e-19 98.6 108 45.4
Lalb_Chr15g0089711 Lupinus albus HOM05D003630 ORTHO05D004151 3.0e-19 98.6 104 52.9
ClCG01G023140 Citrullus lanatus HOM05D003630 ORTHO05D004151 5.1e-19 97.8 105 47.6
Lalb_Chr09g0327781 Lupinus albus HOM05D003630 ORTHO05D004151 5.1e-19 97.8 102 49.0
Sed0024812 Sechium edule HOM05D003630 ORTHO05D004151 5.1e-19 97.8 99 49.5
Sed0001316 Sechium edule HOM05D003630 ORTHO05D004151 6.6e-19 97.4 94 50.0
BcaB07g30534 Brassica carinata HOM05D003630 ORTHO05D004151 8.7e-19 97.1 94 51.1
SGA_v2.0_scaffold100G29703 Striga asiatica HOM05D003630 ORTHO05D004151 8.7e-19 97.1 102 49.0
FAN16G2355 Fragaria x ananassa HOM05D003630 ORTHO05D004151 1.1e-18 96.7 103 50.5
FAN25G0655 Fragaria x ananassa HOM05D003630 ORTHO05D004151 1.1e-18 96.7 103 50.5
arahy.Tifrunner.gnm1.ann1.Q5B35H Arachis hypogaea HOM05D003630 ORTHO05D004151 1.5e-18 96.3 106 47.2
Oeu012144.1 Olea europaea HOM05D003630 ORTHO05D004151 1.5e-18 96.3 107 47.7
Os11g0671000 Oryza sativa ssp. japonica HOM05D003630 ORTHO05D004151 1.5e-18 96.3 111 45.0
SalBow8G2511 Salvia bowleyana HOM05D003630 ORTHO05D004151 1.5e-18 96.3 102 49.0
FvH4_3g08830 Fragaria vesca HOM05D003630 ORTHO05D004151 1.9e-18 95.9 106 50.0
FAN11G3953 Fragaria x ananassa HOM05D003630 ORTHO05D004151 1.9e-18 95.9 106 50.0
Oeu029367.1 Olea europaea HOM05D003630 ORTHO05D004151 1.9e-18 95.9 103 45.6
Sc24g0001020 Simmondsia chinensis HOM05D003630 ORTHO05D004151 1.9e-18 95.9 104 46.2
Ah.09g237490 Amaranthus hybridus HOM05D003630 ORTHO05D004151 2.5e-18 95.5 107 44.9
Sed0017838 Sechium edule HOM05D003630 ORTHO05D004151 2.5e-18 95.5 105 47.6
THA.LOC104812301 Tarenaya hassleriana HOM05D003630 ORTHO05D004151 2.5e-18 95.5 101 48.5
Oeu056100.2 Olea europaea HOM05D003630 ORTHO05D004151 3.3e-18 95.1 104 50.0
FAN21G0750 Fragaria x ananassa HOM05D003630 ORTHO05D004151 7.3e-18 94.0 101 48.5
CARHR178890 Cardamine hirsuta HOM05D003630 ORTHO05D004151 9.6e-18 93.6 106 46.2
HPP92_014190 Vanilla planifolia HOM05D003630 ORTHO05D004151 1.3e-17 93.2 99 48.5
Haze_06402 Corylus avellana HOM05D003630 ORTHO05D004151 1.6e-17 92.8 108 48.1
ClCG03G008090 Citrullus lanatus HOM05D003630 ORTHO05D004151 2.1e-17 92.4 95 49.5
CANSAT35G1140 Cannabis sativa HOM05D003630 ORTHO05D004151 2.8e-17 92.0 110 47.3
Lalb_Chr18g0059451 Lupinus albus HOM05D003630 ORTHO05D004151 3.6e-17 91.7 105 51.4
CsaV3_6G050280 Cucumis sativus L. HOM05D003630 ORTHO05D004151 4.8e-17 91.3 105 43.8
Aa31LG9G7730 Aethionema arabicum HOM05D003630 ORTHO05D004151 8.1e-17 90.5 85 52.9
CAN.G529.26 Capsicum annuum HOM05D003630 ORTHO05D004151 8.1e-17 90.5 59 69.5
arahy.Tifrunner.gnm1.ann1.RY2Y1Z Arachis hypogaea HOM05D003630 ORTHO05D004151 1.1e-16 90.1 106 45.3
MELO3C002620.2 Cucumis melo HOM05D003630 ORTHO05D004151 1.4e-16 89.7 94 50.0
TPR.G16501 Trifolium pratense HOM05D003630 ORTHO05D004151 1.4e-16 89.7 104 51.0
Phvul.006G183600 Phaseolus vulgaris HOM05D003630 ORTHO05D004151 1.8e-16 89.4 104 49.0
Rhsim02G0132700 Rhododendron simsii HOM05D003630 ORTHO05D004151 1.8e-16 89.4 105 50.5
DCAR_003387 Daucus carota HOM05D003630 ORTHO05D004151 3.1e-16 88.6 105 43.8
CSS0035295 Camellia sinensis var. sinensis HOM05D003630 ORTHO05D004151 4.0e-16 88.2 109 45.0
CsaV3_1G012460 Cucumis sativus L. HOM05D003630 ORTHO05D004151 4.0e-16 88.2 94 48.9
HanXRQChr01g0003821 Helianthus annuus HOM05D003630 ORTHO05D004151 4.0e-16 88.2 108 47.2
AUR62017046 Chenopodium quinoa HOM05D003630 ORTHO05D004151 9.0e-16 87.0 107 42.1
Glyma.13G237000 Glycine max HOM05D003630 ORTHO05D004151 1.2e-15 86.7 98 48.0
Psat1g203680 Pisum sativum HOM05D003630 ORTHO05D004151 1.5e-15 86.3 105 45.7
VMungo0540G1118 Vigna mungo HOM05D003630 ORTHO05D004151 2.0e-15 85.9 107 48.6
Ca_00350_v3 Cicer arietinum L. HOM05D003630 ORTHO05D004151 3.4e-15 85.1 104 46.2
Sabra04G0029500 Salix brachista HOM05D003630 ORTHO05D004151 3.4e-15 85.1 106 48.1
Glyma.15G076500 Glycine max HOM05D003630 ORTHO05D004151 5.8e-15 84.3 101 45.5
Medtr2g014240 Medicago truncatula HOM05D003630 ORTHO05D004151 7.6e-15 84.0 98 48.0
Sopen03g002370 Solanum pennellii HOM05D003630 ORTHO05D004151 9.9e-15 83.6 111 43.2
AUR62014851 Chenopodium quinoa HOM05D003630 ORTHO05D004151 1.7e-14 82.8 108 41.7
PSO541G4117 Papaver somniferum HOM05D003630 ORTHO05D004151 1.7e-14 82.8 112 42.9
MD14G1054500 Malus domestica HOM05D003630 ORTHO05D004151 2.2e-14 82.4 88 48.9
Sed0007569 Sechium edule HOM05D003630 ORTHO05D004151 1.9e-13 79.3 97 44.3
Sc17g0006070 Simmondsia chinensis HOM05D003630 ORTHO05D004151 3.2e-13 78.6 105 38.1
SMO367G0919 Selaginella moellendorffii HOM05D003630 ORTHO05D004151 4.2e-13 78.2 113 39.8
SEGI_31386 Sequoiadendron giganteum HOM05D003630 ORTHO05D004151 5.4e-13 77.8 120 39.2
Mapoly0057s0054 Marchantia polymorpha HOM05D003630 ORTHO05D004151 3.5e-12 75.1 136 37.5
PSO675G3190 Papaver somniferum HOM05D003630 ORTHO05D004151 4.6e-12 74.7 112 40.2
EL10Ac8g20421 Beta vulgaris HOM05D003630 ORTHO05D004151 1.3e-11 73.2 113 36.3
DCAR_008021 Daucus carota HOM05D003630 ORTHO05D004151 3.9e-11 71.6 111 37.8
SMO343G0126 Selaginella moellendorffii HOM05D003630 ORTHO05D004151 5.6e-10 67.8 143 31.5
Pp3c15_6160 Physcomitrium patens HOM05D003630 ORTHO05D004151 7.3e-10 67.4 133 34.6
AagrBONN_evm.TU.Sc2ySwM_228.5600 Anthoceros agrestis HOM05D003630 ORTHO05D004151 1.3e-09 66.6 145 33.1
ECA248G1596 Erigeron canadensis HOM05D000885 ORTHO05D008875 2.4e-08 62.4 49 61.2
AagrBONN_evm.TU.Sc2ySwM_362.1976 Anthoceros agrestis HOM05D003630 ORTHO05D004151 2.0e-07 59.3 59 50.8


User provided reference genes

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