Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p21960 Brassica napus HOM05D005541 ORTHO05D006875 9.4e-161 570.1 277 100.0
BolC3t14579H Brassica oleracea HOM05D005541 ORTHO05D006875 4.2e-153 544.7 267 98.9
Sp4g15930 Schrenkiella parvula HOM05D005541 ORTHO05D006875 1.2e-134 483.4 270 85.9
BcaB01g03929 Brassica carinata HOM05D005541 ORTHO05D006875 8.3e-133 477.2 267 88.0
Thhalv10002066m.g Eutrema salsugineum HOM05D005541 ORTHO05D006875 2.0e-131 472.6 267 84.3
BraA05t20138Z Brassica rapa HOM05D005541 ORTHO05D006875 3.8e-130 468.4 267 85.0
BcaB02g10581 Brassica carinata HOM05D005541 ORTHO05D006875 2.5e-129 465.7 268 85.4
BcaC02g11442 Brassica carinata HOM05D005541 ORTHO05D006875 2.5e-129 465.7 267 84.6
C04p15500 Brassica napus HOM05D005541 ORTHO05D006875 2.5e-129 465.7 267 84.6
BolC4t23121H Brassica oleracea HOM05D005541 ORTHO05D006875 2.5e-129 465.7 267 84.6
A05p11950 Brassica napus HOM05D005541 ORTHO05D006875 3.3e-129 465.3 267 84.3
AT5G35080 Arabidopsis thaliana HOM05D005541 ORTHO05D006875 1.5e-121 439.9 268 79.5
BcaC01g05834 Brassica carinata HOM05D005541 ORTHO05D006875 1.5e-113 413.3 204 97.1
Carub.0007s3085 Capsella rubella HOM05D005541 ORTHO05D006875 2.8e-112 409.1 267 73.4
THA.LOC104808948 Tarenaya hassleriana HOM05D005541 ORTHO05D006875 9.5e-105 384.0 275 66.5
THA.LOC104815290 Tarenaya hassleriana HOM05D005541 ORTHO05D006875 8.1e-104 380.9 282 66.0
Aa31LG10G11810 Aethionema arabicum HOM05D005541 ORTHO05D006875 8.4e-101 370.9 243 74.9
CARHR217140 Cardamine hirsuta HOM05D005541 ORTHO05D006875 2.7e-91 339.3 212 77.4
Manes.14G119600 Manihot esculenta HOM05D005541 ORTHO05D006875 4.8e-88 328.6 274 56.9
Thecc.09G137600 Theobroma cacao HOM05D005541 ORTHO05D006875 2.4e-87 326.2 262 59.5
CiPaw.04G177400 Carya illinoinensis HOM05D005541 ORTHO05D006875 9.0e-87 324.3 281 56.9
Cc06_g07640 Coffea canephora HOM05D005541 ORTHO05D006875 9.0e-87 324.3 257 59.5
QL02p090804 Quercus lobata HOM05D005541 ORTHO05D006875 9.0e-87 324.3 265 60.4
Dinv36447 Davidia involucrata HOM05D005541 ORTHO05D006875 4.4e-86 322.0 261 59.8
Migut.J01236 Erythranthe guttata HOM05D005541 ORTHO05D006875 6.4e-85 318.2 249 61.4
Ciclev10009016m.g Citrus clementina HOM05D005541 ORTHO05D006875 8.4e-85 317.8 280 55.4
PGR142G4414 Punica granatum HOM05D005541 ORTHO05D006875 8.4e-85 317.8 261 60.9
Potri.006G061600 Populus trichocarpa HOM05D005541 ORTHO05D006875 1.1e-84 317.4 254 61.0
Rhsim03G0253300 Rhododendron simsii HOM05D005541 ORTHO05D006875 1.4e-84 317.0 251 60.2
vmacro06115 Vaccinium macrocarpon HOM05D005541 ORTHO05D006875 1.4e-84 317.0 261 59.0
Cfa002261 Carpinus fangiana HOM05D005541 ORTHO05D006875 1.9e-84 316.6 277 55.6
TWI32G1342 Tripterygium wilfordii HOM05D005541 ORTHO05D006875 1.9e-84 316.6 260 59.6
Cpa.g.sc46.69 Carica papaya HOM05D005541 ORTHO05D006875 2.4e-84 316.2 280 56.4
Gohir.A13G202000 Gossypium hirsutum HOM05D005541 ORTHO05D006875 2.4e-84 316.2 270 57.0
Atru.chr7.2014 Acer truncatum HOM05D005541 ORTHO05D006875 3.2e-84 315.8 261 59.8
Gohir.D13G207800 Gossypium hirsutum HOM05D005541 ORTHO05D006875 3.2e-84 315.8 270 57.0
TWI63G0008 Tripterygium wilfordii HOM05D005541 ORTHO05D006875 3.2e-84 315.8 261 60.5
Gorai.013G236700 Gossypium raimondii HOM05D005541 ORTHO05D006875 4.2e-84 315.5 270 57.0
Actinidia26358 Actinidia chinensis HOM05D005541 ORTHO05D006875 7.1e-84 314.7 259 59.1
TWI63G1467 Tripterygium wilfordii HOM05D005541 ORTHO05D006875 7.1e-84 314.7 261 60.2
GSVIVG01012859001 Vitis vinifera HOM05D005541 ORTHO05D006875 9.3e-84 314.3 276 56.5
Gorai.004G109500 Gossypium raimondii HOM05D005541 ORTHO05D006875 1.2e-83 313.9 262 56.9
ClCG06G011880 Citrullus lanatus HOM05D005541 ORTHO05D006875 4.6e-83 312.0 260 58.1
RcHm_v2.0_Chr2g0087061 Rosa chinensis HOM05D005541 ORTHO05D006875 6.0e-83 311.6 273 56.0
Lj6g0025347 Lotus japonicus HOM05D005541 ORTHO05D006875 7.9e-83 311.2 271 56.5
Sabra06G0044200 Salix brachista HOM05D005541 ORTHO05D006875 1.3e-82 310.5 266 59.4
Glyma.15G198100 Glycine max HOM05D005541 ORTHO05D006875 1.7e-82 310.1 247 60.7
Duzib168G0734 Durio zibethinus HOM05D005541 ORTHO05D006875 2.3e-82 309.7 269 55.4
Lalb_Chr08g0233581 Lupinus albus HOM05D005541 ORTHO05D006875 3.0e-82 309.3 248 59.7
MD02G1018200 Malus domestica HOM05D005541 ORTHO05D006875 3.0e-82 309.3 255 58.0
Medtr2g450740 Medicago truncatula HOM05D005541 ORTHO05D006875 3.0e-82 309.3 282 55.3
SGA_v2.0_scaffold45G17077 Striga asiatica HOM05D005541 ORTHO05D006875 3.0e-82 309.3 249 59.0
arahy.Tifrunner.gnm1.ann1.9T6TW9 Arachis hypogaea HOM05D005541 ORTHO05D006875 5.1e-82 308.5 241 60.6
Gohir.A08G090600 Gossypium hirsutum HOM05D005541 ORTHO05D006875 5.1e-82 308.5 261 56.7
MD15G1162200 Malus domestica HOM05D005541 ORTHO05D006875 6.6e-82 308.1 277 54.2
Duzib187G1717 Durio zibethinus HOM05D005541 ORTHO05D006875 1.5e-81 307.0 261 57.9
FvH4_1g02000 Fragaria vesca HOM05D005541 ORTHO05D006875 1.5e-81 307.0 267 54.7
Glyma.09G091600 Glycine max HOM05D005541 ORTHO05D006875 1.5e-81 307.0 266 57.5
MSTRG.6077 Avicennia marina HOM05D005541 ORTHO05D006875 1.9e-81 306.6 269 55.8
arahy.Tifrunner.gnm1.ann1.H1LUDS Arachis hypogaea HOM05D005541 ORTHO05D006875 2.5e-81 306.2 240 60.4
Prupe.7G257600 Prunus persica HOM05D005541 ORTHO05D006875 3.3e-81 305.8 285 54.0
Actinidia14228 Actinidia chinensis HOM05D005541 ORTHO05D006875 4.3e-81 305.4 238 60.9
HanXRQChr03g0063361 Helianthus annuus HOM05D005541 ORTHO05D006875 4.3e-81 305.4 257 58.0
CANSAT11G2438 Cannabis sativa HOM05D005541 ORTHO05D006875 7.4e-81 304.7 264 55.7
CsaV3_1G028340 Cucumis sativus L. HOM05D005541 ORTHO05D006875 9.6e-81 304.3 262 58.0
FAN28G0031 Fragaria x ananassa HOM05D005541 ORTHO05D006875 9.6e-81 304.3 278 53.2
Sed0021107 Sechium edule HOM05D005541 ORTHO05D006875 1.6e-80 303.5 252 57.5
Psat1g021320 Pisum sativum HOM05D005541 ORTHO05D006875 3.6e-80 302.4 269 55.0
Potri.018G118200 Populus trichocarpa HOM05D005541 ORTHO05D006875 3.6e-80 302.4 258 59.3
Aqoxy7G03592 Aquilegia oxysepala HOM05D005541 ORTHO05D006875 4.8e-80 302.0 253 58.1
FAN26G0160 Fragaria x ananassa HOM05D005541 ORTHO05D006875 6.2e-80 301.6 271 53.9
Sed0001591 Sechium edule HOM05D005541 ORTHO05D006875 8.1e-80 301.2 260 57.3
MELO3C010277.2 Cucumis melo HOM05D005541 ORTHO05D006875 1.1e-79 300.8 262 57.6
HanXRQChr09g0241861 Helianthus annuus HOM05D005541 ORTHO05D006875 1.4e-79 300.4 257 57.2
VMungo1309G2820 Vigna mungo HOM05D005541 ORTHO05D006875 6.9e-79 298.1 251 57.8
ECA240G1064 Erigeron canadensis HOM05D005541 ORTHO05D006875 1.2e-78 297.4 274 54.0
Lsat_1_v5_gn_7_46800 Lactuca sativa HOM05D005541 ORTHO05D006875 1.2e-78 297.4 257 56.4
Ca_03100_v3 Cicer arietinum L. HOM05D005541 ORTHO05D006875 1.5e-78 297.0 276 55.1
Lalb_Chr11g0073101 Lupinus albus HOM05D005541 ORTHO05D006875 2.0e-78 296.6 262 55.7
Phvul.009G212200 Phaseolus vulgaris HOM05D005541 ORTHO05D006875 2.0e-78 296.6 251 57.0
Hund09308 Selenicereus undatus HOM05D005541 ORTHO05D006875 4.5e-78 295.4 264 56.4
Oeu012222.1 Olea europaea HOM05D005541 ORTHO05D006875 7.6e-78 294.7 267 53.9
TAR100G0002 Trochodendron aralioides HOM05D005541 ORTHO05D006875 1.3e-77 293.9 276 53.3
TAR170G0003 Trochodendron aralioides HOM05D005541 ORTHO05D006875 1.3e-77 293.9 276 53.3
Solyc07g007380.4 Solanum lycopersicum HOM05D005541 ORTHO05D006875 2.2e-77 293.1 278 52.5
Sopen07g003450 Solanum pennellii HOM05D005541 ORTHO05D006875 2.9e-77 292.7 278 52.5
Nitab4.5_0002286g0050 Nicotiana tabacum HOM05D005541 ORTHO05D006875 1.4e-76 290.4 260 54.2
Nitab4.5_0002845g0020 Nicotiana tabacum HOM05D005541 ORTHO05D006875 3.2e-76 289.3 260 54.2
AUR62020012 Chenopodium quinoa HOM05D005541 ORTHO05D006875 4.2e-76 288.9 243 58.4
AUR62011221 Chenopodium quinoa HOM05D005541 ORTHO05D006875 9.3e-76 287.7 269 53.5
Peaxi162Scf00088g00520 Petunia axillaris HOM05D005541 ORTHO05D006875 1.2e-75 287.3 253 54.2
PGSC0003DMG400030689 Solanum tuberosum HOM05D005541 ORTHO05D006875 2.1e-75 286.6 278 52.2
Sc08g0006020 Simmondsia chinensis HOM05D005541 ORTHO05D006875 3.5e-75 285.8 243 58.4
Nn8g39653 Nelumbo nucifera HOM05D005541 ORTHO05D006875 1.1e-73 280.8 280 51.4
Gohir.D08G101500 Gossypium hirsutum HOM05D005541 ORTHO05D006875 3.3e-73 279.3 262 52.7
CAN.G1281.6 Capsicum annuum HOM05D005541 ORTHO05D006875 7.4e-73 278.1 273 50.9
PSO017G3833 Papaver somniferum HOM05D005541 ORTHO05D006875 1.3e-72 277.3 265 50.2
PSO478G5201 Papaver somniferum HOM05D005541 ORTHO05D006875 2.1e-72 276.6 265 50.6
Eucgr.C00480 Eucalyptus grandis HOM05D005541 ORTHO05D006875 9.0e-71 271.2 278 50.7
ATR0767G116 Amborella trichopoda HOM05D005541 ORTHO05D006875 1.3e-69 267.3 263 52.5
Dinv41444 Davidia involucrata HOM05D005541 ORTHO05D006875 1.3e-69 267.3 201 62.7
DCAR_009345 Daucus carota HOM05D005541 ORTHO05D006875 1.7e-69 266.9 261 52.9
Gohir.D13G208000 Gossypium hirsutum HOM05D005541 ORTHO05D006875 6.5e-69 265.0 211 60.2
COL.COLO4_33365 Corchorus olitorius HOM05D005541 ORTHO05D006875 8.4e-69 264.6 218 58.7
HPP92_020539 Vanilla planifolia HOM05D005541 ORTHO05D006875 1.4e-68 263.8 269 47.6
MBI15_g25760_MAGBIO Magnolia biondii HOM05D005541 ORTHO05D006875 3.2e-68 262.7 226 54.4
Lj7A439T20 Lonicera japonica HOM05D005541 ORTHO05D006875 5.5e-68 261.9 228 55.7
CSS0024399 Camellia sinensis var. sinensis HOM05D005541 ORTHO05D006875 7.1e-68 261.5 206 60.7
CDE02G2611 Ceratophyllum demersum HOM05D005541 ORTHO05D006875 7.9e-67 258.1 230 51.3
Ah.09g224130 Amaranthus hybridus HOM05D005541 ORTHO05D006875 1.1e-65 254.2 210 59.0
EL10Ac8g18781 Beta vulgaris HOM05D005541 ORTHO05D006875 7.4e-65 251.5 208 59.1
Zm00001eb028460 Zea mays HOM05D005541 ORTHO05D006875 9.0e-63 244.6 280 44.6
Haze_25444 Corylus avellana HOM05D005541 ORTHO05D006875 2.0e-62 243.4 251 49.4
Pp3c2_6810 Physcomitrium patens HOM05D005541 ORTHO05D006875 4.8e-56 222.2 272 44.1
Oeu028018.1 Olea europaea HOM05D005541 ORTHO05D006875 1.1e-55 221.1 235 48.5
Actinidia38706 Actinidia chinensis HOM05D005541 ORTHO05D006875 3.1e-55 219.5 205 52.7
FAN19G0623 Fragaria x ananassa HOM05D005541 ORTHO05D006875 1.3e-53 214.2 198 52.0
Zm00001eb136970 Zea mays HOM05D005541 ORTHO05D006875 3.8e-53 212.6 211 46.9
Pp3c1_27810 Physcomitrium patens HOM05D005541 ORTHO05D006875 9.4e-52 208.0 279 40.9
Mapoly0020s0022 Marchantia polymorpha HOM05D005541 ORTHO05D006875 7.4e-49 198.4 260 40.4
unitig_0.g507 Utricularia gibba HOM05D005541 ORTHO05D006875 2.4e-47 193.4 156 61.5
AagrBONN_evm.TU.Sc2ySwM_228.2742 Anthoceros agrestis HOM05D005541 ORTHO05D006875 1.6e-43 180.6 227 42.3
SMO174G0227 Selaginella moellendorffii HOM05D005541 ORTHO05D006875 8.8e-42 174.9 244 38.5
Oeu028135.2 Olea europaea HOM05D005541 ORTHO05D006875 3.8e-37 159.5 172 48.8
CBR_g45403 Chara braunii HOM05D005541 ORTHO05D006875 5.2e-34 149.1 276 36.2
SEGI_36543 Sequoiadendron giganteum HOM05D005541 ORTHO05D006875 2.0e-30 137.1 134 53.0
MCO11G854 Micromonas commoda HOM05D005541 ORTHO05D006875 3.2e-28 129.8 212 36.8
Os06g0644800 Oryza sativa ssp. japonica HOM05D005541 ORTHO05D006875 4.4e-25 119.4 130 44.6
Cre06.g257900 Chlamydomonas reinhardtii HOM05D005541 ORTHO05D006875 4.5e-22 109.4 166 39.2
Ca_27153_v3 Cicer arietinum L. HOM05D005541 ORTHO05D006875 1.0e-21 108.2 88 62.5
PRCOL_00001292 Prasinoderma coloniale HOM05D005541 ORTHO05D006875 8.3e-16 88.6 155 31.6
CARHR217150 Cardamine hirsuta HOM05D005541 ORTHO05D006875 7.7e-14 82.0 57 68.4
RcHm_v2.0_Chr1g0314561 Rosa chinensis HOM05D005541 ORTHO05D006875 3.3e-12 76.6 57 56.1
RcHm_v2.0_Chr5g0069501 Rosa chinensis HOM05D005541 ORTHO05D006875 4.7e-11 72.8 57 54.4
RcHm_v2.0_Chr7g0241391 Rosa chinensis HOM05D005541 ORTHO05D006875 1.0e-10 71.6 57 59.6
Ca_24194_v3 Cicer arietinum L. HOM05D000002 ORTHO05D000001 2.9e-08 63.5 109 34.9
unitig_0.g506 Utricularia gibba HOM05D001054 ORTHO05D007110 2.9e-08 63.5 76 39.5
HanXRQChr03g0068961 Helianthus annuus HOM05D005541 ORTHO05D006875 3.2e-07 60.1 49 59.2


User provided reference genes

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