Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p21930 Brassica napus HOM05D003968 ORTHO05D004077 2.9e-78 295.4 178 100.0
BcaC01g05837 Brassica carinata HOM05D003968 ORTHO05D004077 3.7e-78 295.0 177 100.0
A03p18770 Brassica napus HOM05D003968 ORTHO05D004077 1.9e-74 282.7 178 96.6
BraA03t11137Z Brassica rapa HOM05D003968 ORTHO05D004077 1.2e-73 280.0 178 95.5
BcaB01g03931 Brassica carinata HOM05D003968 ORTHO05D004077 1.6e-65 253.1 178 88.2
BcaB02g10569 Brassica carinata HOM05D003968 ORTHO05D004077 2.1e-65 252.7 192 83.9
A05p12030 Brassica napus HOM05D003968 ORTHO05D004077 2.8e-65 252.3 190 84.2
Thhalv10017284m.g Eutrema salsugineum HOM05D003968 ORTHO05D004077 4.7e-65 251.5 182 87.9
Sp4g15850 Schrenkiella parvula HOM05D003968 ORTHO05D004077 5.2e-64 248.1 183 86.3
BcaC02g11436 Brassica carinata HOM05D003968 ORTHO05D004077 1.2e-63 246.9 197 80.2
C04p15610 Brassica napus HOM05D003968 ORTHO05D004077 1.2e-63 246.9 197 80.2
BraA05t20145Z Brassica rapa HOM05D003968 ORTHO05D004077 1.4e-61 240.0 203 78.3
BcaC02g07799 Brassica carinata HOM05D003968 ORTHO05D004077 3.2e-61 238.8 193 80.3
C04p63030 Brassica napus HOM05D003968 ORTHO05D004077 3.2e-61 238.8 193 81.3
BolC4t23129H Brassica oleracea HOM05D003968 ORTHO05D004077 2.3e-59 232.6 210 74.3
BolC4t27780H Brassica oleracea HOM05D003968 ORTHO05D004077 1.9e-58 229.6 206 76.2
AT2G33510 Arabidopsis thaliana HOM05D003968 ORTHO05D004077 4.3e-58 228.4 189 81.5
A04p25820 Brassica napus HOM05D003968 ORTHO05D004077 7.3e-58 227.6 193 79.3
AL4G29180 Arabidopsis lyrata HOM05D003968 ORTHO05D004077 9.6e-58 227.3 184 84.2
BcaB06g28694 Brassica carinata HOM05D003968 ORTHO05D004077 2.1e-57 226.1 200 73.5
CARHR127520 Cardamine hirsuta HOM05D003968 ORTHO05D004077 1.8e-56 223.0 183 80.9
BraA04t18084Z Brassica rapa HOM05D003968 ORTHO05D004077 1.1e-53 213.8 202 74.3
Carub.0004s1514 Capsella rubella HOM05D003968 ORTHO05D004077 5.4e-53 211.5 196 76.0
Aa31LG9G13440 Aethionema arabicum HOM05D003968 ORTHO05D004077 2.0e-47 193.0 172 75.0
THA.LOC104820530 Tarenaya hassleriana HOM05D003968 ORTHO05D004077 1.6e-44 183.3 182 59.9
THA.LOC104814203 Tarenaya hassleriana HOM05D003968 ORTHO05D004077 1.5e-42 176.8 184 64.1
THA.LOC104812600 Tarenaya hassleriana HOM05D003968 ORTHO05D004077 3.3e-42 175.6 187 66.3
Sp1g24250 Schrenkiella parvula HOM05D003968 ORTHO05D004077 5.6e-42 174.9 179 70.4
Carub.0001s2650 Capsella rubella HOM05D003968 ORTHO05D004077 8.2e-41 171.0 174 71.3
Aa31sc415G10 Aethionema arabicum HOM05D003968 ORTHO05D004077 5.3e-40 168.3 185 67.6
BraA08t34544Z Brassica rapa HOM05D003968 ORTHO05D004077 1.0e-38 164.1 175 61.7
BcaB03g13960 Brassica carinata HOM05D003968 ORTHO05D004077 1.7e-38 163.3 178 51.1
Manes.08G103100 Manihot esculenta HOM05D003968 ORTHO05D004077 1.4e-37 160.2 192 55.2
AT1G28070 Arabidopsis thaliana HOM05D003968 ORTHO05D004077 3.2e-37 159.1 175 69.7
A07p11490 Brassica napus HOM05D003968 ORTHO05D004077 9.3e-37 157.5 178 50.0
BraA07t28938Z Brassica rapa HOM05D003968 ORTHO05D004077 9.3e-37 157.5 178 50.0
CARHR027520 Cardamine hirsuta HOM05D003968 ORTHO05D004077 9.3e-37 157.5 174 64.4
Cfa009411 Carpinus fangiana HOM05D003968 ORTHO05D004077 7.9e-36 154.5 180 53.9
Ciclev10032280m.g Citrus clementina HOM05D003968 ORTHO05D004077 1.0e-35 154.1 186 62.4
Haze_12469 Corylus avellana HOM05D003968 ORTHO05D004077 1.0e-35 154.1 180 52.2
CiPaw.06G107600 Carya illinoinensis HOM05D003968 ORTHO05D004077 2.3e-35 152.9 179 54.2
Eucgr.H03380 Eucalyptus grandis HOM05D003968 ORTHO05D004077 2.3e-35 152.9 192 54.7
Manes.09G185900 Manihot esculenta HOM05D003968 ORTHO05D004077 3.0e-35 152.5 207 52.7
Phvul.008G000400 Phaseolus vulgaris HOM05D003968 ORTHO05D004077 5.1e-35 151.8 190 46.8
CiPaw.05G103900 Carya illinoinensis HOM05D003968 ORTHO05D004077 6.7e-35 151.4 184 51.6
VMungo1383G2332 Vigna mungo HOM05D003968 ORTHO05D004077 6.7e-35 151.4 189 46.6
Potri.003G165800 Populus trichocarpa HOM05D003968 ORTHO05D004077 1.1e-34 150.6 183 54.1
QL03p050330 Quercus lobata HOM05D003968 ORTHO05D004077 1.5e-34 150.2 186 47.8
Thhalv10008849m.g Eutrema salsugineum HOM05D003968 ORTHO05D004077 3.3e-34 149.1 193 60.6
TWI75G0242 Tripterygium wilfordii HOM05D003968 ORTHO05D004077 7.4e-34 147.9 193 51.3
A08p25930 Brassica napus HOM05D003968 ORTHO05D004077 9.7e-34 147.5 175 57.1
Peaxi162Scf00128g01760 Petunia axillaris HOM05D003968 ORTHO05D004077 9.7e-34 147.5 191 45.0
Potri.001G062000 Populus trichocarpa HOM05D003968 ORTHO05D004077 9.7e-34 147.5 187 52.4
Duzib052G1223 Durio zibethinus HOM05D003968 ORTHO05D004077 2.2e-33 146.4 200 54.5
Duzib251G0690 Durio zibethinus HOM05D003968 ORTHO05D004077 2.2e-33 146.4 201 54.7
Nitab4.5_0007554g0020 Nicotiana tabacum HOM05D003968 ORTHO05D004077 2.2e-33 146.4 187 50.3
Glyma.18G302000 Glycine max HOM05D003968 ORTHO05D004077 3.7e-33 145.6 195 54.4
Lalb_Chr04g0257091 Lupinus albus HOM05D003968 ORTHO05D004077 3.7e-33 145.6 190 60.5
ECA233G5077 Erigeron canadensis HOM05D003968 ORTHO05D004077 8.2e-33 144.4 194 58.2
Gohir.D12G145000 Gossypium hirsutum HOM05D003968 ORTHO05D004077 8.2e-33 144.4 200 53.0
Gorai.008G156400 Gossypium raimondii HOM05D003968 ORTHO05D004077 1.1e-32 144.1 202 52.5
TWI36G1280 Tripterygium wilfordii HOM05D003968 ORTHO05D004077 1.1e-32 144.1 193 43.5
BolC3t19720H Brassica oleracea HOM05D003968 ORTHO05D004077 1.4e-32 143.7 175 58.3
Gohir.A12G140400 Gossypium hirsutum HOM05D003968 ORTHO05D004077 1.4e-32 143.7 203 51.7
GSVIVG01000957001 Vitis vinifera HOM05D003968 ORTHO05D004077 1.4e-32 143.7 182 58.8
Dinv17895 Davidia involucrata HOM05D003968 ORTHO05D004077 1.8e-32 143.3 182 59.3
Duzib248G0844 Durio zibethinus HOM05D003968 ORTHO05D004077 2.4e-32 142.9 187 51.3
Lalb_Chr14g0375131 Lupinus albus HOM05D003968 ORTHO05D004077 2.4e-32 142.9 185 61.1
Sabra01G0044600 Salix brachista HOM05D003968 ORTHO05D004077 2.4e-32 142.9 187 50.8
Thecc.02G196200 Theobroma cacao HOM05D003968 ORTHO05D004077 2.4e-32 142.9 197 55.8
PGR057G0001 Punica granatum HOM05D003968 ORTHO05D004077 3.1e-32 142.5 185 54.1
PGR119G2322 Punica granatum HOM05D003968 ORTHO05D004077 3.1e-32 142.5 185 54.1
TWI18G0914 Tripterygium wilfordii HOM05D003968 ORTHO05D004077 3.1e-32 142.5 191 50.3
BcaC06g35328 Brassica carinata HOM05D003968 ORTHO05D004077 5.3e-32 141.7 178 46.6
C03p74720 Brassica napus HOM05D003968 ORTHO05D004077 5.3e-32 141.7 175 57.1
C07p17340 Brassica napus HOM05D003968 ORTHO05D004077 5.3e-32 141.7 178 46.6
BolC7t42238H Brassica oleracea HOM05D003968 ORTHO05D004077 5.3e-32 141.7 178 46.6
HanXRQChr08g0210131 Helianthus annuus HOM05D003968 ORTHO05D004077 5.3e-32 141.7 202 51.0
vmacro22632 Vaccinium macrocarpon HOM05D003968 ORTHO05D004077 5.3e-32 141.7 192 57.8
Actinidia30604 Actinidia chinensis HOM05D003968 ORTHO05D004077 6.9e-32 141.4 177 50.8
arahy.Tifrunner.gnm1.ann1.25I2B1 Arachis hypogaea HOM05D003968 ORTHO05D004077 1.2e-31 140.6 207 48.8
arahy.Tifrunner.gnm1.ann1.GKU1A2 Arachis hypogaea HOM05D003968 ORTHO05D004077 1.2e-31 140.6 207 48.8
MD13G1126400 Malus domestica HOM05D003968 ORTHO05D004077 1.2e-31 140.6 199 57.8
MD16G1126900 Malus domestica HOM05D003968 ORTHO05D004077 1.5e-31 140.2 214 54.7
RcHm_v2.0_Chr4g0429341 Rosa chinensis HOM05D003968 ORTHO05D004077 2.6e-31 139.4 210 52.9
Lj1g0012774 Lotus japonicus HOM05D003968 ORTHO05D004077 3.4e-31 139.0 190 49.5
Sed0024018 Sechium edule HOM05D003968 ORTHO05D004077 5.9e-31 138.3 193 59.6
BcaC01g00004 Brassica carinata HOM05D003968 ORTHO05D004077 7.6e-31 137.9 175 56.6
TAR629G0662 Trochodendron aralioides HOM05D003968 ORTHO05D004077 7.6e-31 137.9 184 50.0
ClCG07G011730 Citrullus lanatus HOM05D003968 ORTHO05D004077 1.0e-30 137.5 192 57.8
CSS0002178 Camellia sinensis var. sinensis HOM05D003968 ORTHO05D004077 1.3e-30 137.1 182 57.1
Hma1.2p1_0459F.1_g157230 Hydrangea macrophylla HOM05D003968 ORTHO05D004077 1.3e-30 137.1 196 55.1
Oeu003280.1 Olea europaea HOM05D003968 ORTHO05D004077 1.7e-30 136.7 191 44.5
Sabra03G0121000 Salix brachista HOM05D003968 ORTHO05D004077 1.7e-30 136.7 184 48.9
Medtr7g005500 Medicago truncatula HOM05D003968 ORTHO05D004077 3.8e-30 135.6 192 49.5
Cpa.g.sc123.52 Carica papaya HOM05D003968 ORTHO05D004077 8.5e-30 134.4 205 47.3
Nn3g16325 Nelumbo nucifera HOM05D003968 ORTHO05D004077 1.1e-29 134.0 202 41.1
Prupe.1G219000 Prunus persica HOM05D003968 ORTHO05D004077 1.1e-29 134.0 221 47.1
MBI07_g37482_MAGBIO Magnolia biondii HOM05D003968 ORTHO05D004077 1.9e-29 133.3 177 50.3
HanXRQChr12g0362341 Helianthus annuus HOM05D003968 ORTHO05D004077 3.2e-29 132.5 182 53.3
Peaxi162Scf00758g00054 Petunia axillaris HOM05D003968 ORTHO05D004077 3.2e-29 132.5 193 57.0
COL.COLO4_11740 Corchorus olitorius HOM05D003968 ORTHO05D004077 4.2e-29 132.1 205 43.4
MSTRG.8041 Avicennia marina HOM05D003968 ORTHO05D004077 5.5e-29 131.7 191 44.5
BcaC05g26810 Brassica carinata HOM05D003968 ORTHO05D004077 5.5e-29 131.7 132 53.8
Psat0s2399g0040 Pisum sativum HOM05D003968 ORTHO05D004077 1.2e-28 130.6 129 55.8
Nitab4.5_0001600g0080 Nicotiana tabacum HOM05D003968 ORTHO05D004077 1.6e-28 130.2 179 43.0
Atru.chr11.2403 Acer truncatum HOM05D003968 ORTHO05D004077 2.7e-28 129.4 208 48.1
FAN12G2512 Fragaria x ananassa HOM05D003968 ORTHO05D004077 2.7e-28 129.4 209 51.7
unitig_747.g21116 Utricularia gibba HOM05D003968 ORTHO05D004077 2.7e-28 129.4 196 39.8
Actinidia22131 Actinidia chinensis HOM05D003968 ORTHO05D004077 3.6e-28 129.0 184 59.2
CDE06G0253 Ceratophyllum demersum HOM05D003968 ORTHO05D004077 3.6e-28 129.0 183 42.1
Migut.K01036 Erythranthe guttata HOM05D003968 ORTHO05D004077 4.6e-28 128.6 200 45.0
Solyc01g009770.3 Solanum lycopersicum HOM05D003968 ORTHO05D004077 4.6e-28 128.6 205 40.0
Aqoxy5G03211 Aquilegia oxysepala HOM05D003968 ORTHO05D004077 6.1e-28 128.3 186 52.7
CANSAT56G0023 Cannabis sativa HOM05D003968 ORTHO05D004077 7.9e-28 127.9 218 46.3
CAN.G1277.6 Capsicum annuum HOM05D003968 ORTHO05D004077 7.9e-28 127.9 191 42.4
Sopen01g005310 Solanum pennellii HOM05D003968 ORTHO05D004077 7.9e-28 127.9 216 40.3
CDE02G3264 Ceratophyllum demersum HOM05D003278 ORTHO05D003738 1.0e-27 127.5 178 42.1
Lj6C835T0 Lonicera japonica HOM05D003968 ORTHO05D004077 1.8e-27 126.7 182 50.0
SalBow2G1659 Salvia bowleyana HOM05D003968 ORTHO05D004077 1.8e-27 126.7 198 47.5
Lsat_1_v5_gn_8_147160 Lactuca sativa HOM05D003968 ORTHO05D004077 2.3e-27 126.3 240 45.0
unitig_749.g13321 Utricularia gibba HOM05D003968 ORTHO05D004077 2.3e-27 126.3 182 43.4
MELO3C022347.2 Cucumis melo HOM05D003968 ORTHO05D004077 3.9e-27 125.6 194 47.9
FvH4_4g23070 Fragaria vesca HOM05D003968 ORTHO05D004077 5.1e-27 125.2 210 51.4
CSS0023603 Camellia sinensis var. sinensis HOM05D003968 ORTHO05D004077 6.7e-27 124.8 188 43.6
CSS0048086 Camellia sinensis var. sinensis HOM05D003968 ORTHO05D004077 6.7e-27 124.8 202 53.5
PSO478G1150 Papaver somniferum HOM05D003968 ORTHO05D004077 6.7e-27 124.8 197 54.8
PSO017G3780 Papaver somniferum HOM05D003968 ORTHO05D004077 8.8e-27 124.4 198 55.1
CsaV3_4G002470 Cucumis sativus L. HOM05D003968 ORTHO05D004077 1.1e-26 124.0 137 69.3
CsaV3_6G007850 Cucumis sativus L. HOM05D003968 ORTHO05D004077 1.1e-26 124.0 199 48.2
Lsat_1_v5_gn_4_1260 Lactuca sativa HOM05D003968 ORTHO05D004077 1.5e-26 123.6 181 58.6
Sed0012192 Sechium edule HOM05D003968 ORTHO05D004077 1.5e-26 123.6 191 57.1
Sc11g0000210 Simmondsia chinensis HOM05D003968 ORTHO05D004077 1.5e-26 123.6 216 38.9
FAN17G1317 Fragaria x ananassa HOM05D003968 ORTHO05D004077 1.9e-26 123.2 240 47.5
MSTRG.468 Avicennia marina HOM05D003968 ORTHO05D004077 2.5e-26 122.9 201 45.8
ClCG06G001810 Citrullus lanatus HOM05D003968 ORTHO05D004077 5.7e-26 121.7 197 48.2
Nn4g22193 Nelumbo nucifera HOM05D003968 ORTHO05D004077 9.7e-26 120.9 181 44.2
BcaC05g26624 Brassica carinata HOM05D003968 ORTHO05D004077 1.3e-25 120.6 147 64.6
C05p26740 Brassica napus HOM05D003968 ORTHO05D004077 1.3e-25 120.6 147 64.6
TPR.G15634 Trifolium pratense HOM05D003968 ORTHO05D004077 1.3e-25 120.6 192 54.2
A09p38020 Brassica napus HOM05D003968 ORTHO05D004077 1.7e-25 120.2 147 62.6
BraA09t39312Z Brassica rapa HOM05D003968 ORTHO05D004077 1.7e-25 120.2 147 62.6
Ah.02g131150 Amaranthus hybridus HOM05D003968 ORTHO05D004077 2.8e-25 119.4 218 36.7
Ah.03g135740 Amaranthus hybridus HOM05D003968 ORTHO05D004077 1.1e-24 117.5 222 37.4
PGSC0003DMG400030000 Solanum tuberosum HOM05D003968 ORTHO05D004077 1.4e-24 117.1 211 38.9
unitig_26.g10423 Utricularia gibba HOM05D003968 ORTHO05D004077 6.9e-24 114.8 151 42.4
MELO3C017796.2 Cucumis melo HOM05D003968 ORTHO05D004077 9.1e-24 114.4 153 62.1
Hund25497 Selenicereus undatus HOM05D003968 ORTHO05D004077 2.6e-23 112.8 211 35.1
MBI11_g37080_MAGBIO Magnolia biondii HOM05D003968 ORTHO05D004077 3.4e-23 112.5 127 59.8
FAN07G1723 Fragaria x ananassa HOM05D003968 ORTHO05D004077 5.9e-23 111.7 225 47.6
DCAR_024638 Daucus carota HOM05D003968 ORTHO05D004077 1.3e-22 110.5 236 36.0
ATR0582G076 Amborella trichopoda HOM05D003968 ORTHO05D004077 1.1e-21 107.5 177 42.4
Cc11_g17440 Coffea canephora HOM05D003968 ORTHO05D004077 3.2e-21 105.9 231 39.8
PSO675G4434 Papaver somniferum HOM05D003968 ORTHO05D004077 2.1e-20 103.2 173 44.5
PSO229G0040 Papaver somniferum HOM05D003968 ORTHO05D004077 3.6e-20 102.4 179 41.3
BolC5t31398H Brassica oleracea HOM05D003968 ORTHO05D004077 5.1e-19 98.6 143 60.8
Oeu019428.1 Olea europaea HOM05D003968 ORTHO05D004077 8.8e-19 97.8 183 36.1
TAR622G0782 Trochodendron aralioides HOM05D003968 ORTHO05D004077 3.3e-18 95.9 184 38.6
SGA_v2.0_scaffold80G25944 Striga asiatica HOM05D003968 ORTHO05D004077 2.2e-17 93.2 113 47.8
Rhsim12G0020700 Rhododendron simsii HOM05D003968 ORTHO05D004077 8.2e-17 91.3 138 44.2
HPP92_023087 Vanilla planifolia HOM05D003968 ORTHO05D004077 5.3e-16 88.6 219 30.1
CSS0031909 Camellia sinensis var. sinensis HOM05D003968 ORTHO05D004077 1.3e-14 84.0 217 34.1
AL1G41580 Arabidopsis lyrata HOM05D003968 ORTHO05D004077 1.7e-14 83.6 99 76.8
HPP92_006446 Vanilla planifolia HOM05D003968 ORTHO05D004077 5.0e-14 82.0 215 30.2
BcaC05g26622 Brassica carinata HOM05D003968 ORTHO05D004077 2.5e-13 79.7 139 51.8
HPP92_011550 Vanilla planifolia HOM05D003968 ORTHO05D004077 3.6e-12 75.9 154 46.8
MBI01_g34379_MAGBIO Magnolia biondii HOM05D003968 ORTHO05D004077 4.7e-12 75.5 110 47.3
Os02g0516400 Oryza sativa ssp. japonica HOM05D003968 ORTHO05D004077 8.8e-11 71.2 91 41.8
CDE09G1092 Ceratophyllum demersum HOM05D003968 ORTHO05D004077 4.4e-10 68.9 177 28.8
CDE02G1122 Ceratophyllum demersum HOM05D003968 ORTHO05D004077 2.8e-09 66.2 131 29.0
Gohir.A01G021200 Gossypium hirsutum HOM05D003968 ORTHO05D004077 3.7e-09 65.9 184 40.2
Gorai.002G022000 Gossypium raimondii HOM05D003968 ORTHO05D004077 4.8e-09 65.5 188 41.0
Gohir.D01G019600 Gossypium hirsutum HOM05D003968 ORTHO05D004077 8.2e-09 64.7 184 40.2
Pp3c27_4970 Physcomitrium patens HOM05D013579 ORTHO05D004077 3.1e-08 62.8 65 46.2
Pp3c16_12300 Physcomitrium patens HOM05D013579 ORTHO05D001508 3.5e-07 59.3 65 44.6
Pp3c5_5250 Physcomitrium patens HOM05D013579 ORTHO05D015305 5.0e-06 55.5 45 55.6
Pp3c6_24870 Physcomitrium patens HOM05D013579 ORTHO05D015305 8.5e-06 54.7 93 35.5


User provided reference genes

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