Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p21790 Brassica napus HOM05D004446 ORTHO05D005346 1.6e-45 185.7 89 100.0
BolC3t14561H Brassica oleracea HOM05D004446 ORTHO05D005346 2.7e-29 131.7 70 87.1
Carub.0004s1468 Capsella rubella HOM05D004446 ORTHO05D005346 8.3e-18 93.6 49 91.8
AL4G28840 Arabidopsis lyrata HOM05D004446 ORTHO05D005346 1.8e-17 92.4 46 95.7
AT2G33220 Arabidopsis thaliana HOM05D004446 ORTHO05D005346 1.8e-17 92.4 46 95.7
BcaC07g36901 Brassica carinata HOM05D004446 ORTHO05D005346 1.8e-17 92.4 46 95.7
BcaC07g42166 Brassica carinata HOM05D004446 ORTHO05D005346 1.8e-17 92.4 46 95.7
A08p36850 Brassica napus HOM05D004446 ORTHO05D005346 1.8e-17 92.4 46 95.7
A09p67770 Brassica napus HOM05D004446 ORTHO05D005346 1.8e-17 92.4 46 95.7
A10p03060 Brassica napus HOM05D004446 ORTHO05D005346 1.8e-17 92.4 46 95.7
C05p02820 Brassica napus HOM05D004446 ORTHO05D005346 1.8e-17 92.4 46 95.7
C08p01220 Brassica napus HOM05D004446 ORTHO05D005346 1.8e-17 92.4 46 95.7
BolC5t29065H Brassica oleracea HOM05D004446 ORTHO05D005346 1.8e-17 92.4 46 95.7
BolC8t46930H Brassica oleracea HOM05D004446 ORTHO05D005346 1.8e-17 92.4 46 95.7
BolC8t52743H Brassica oleracea HOM05D004446 ORTHO05D005346 1.8e-17 92.4 46 95.7
BraA08t35586Z Brassica rapa HOM05D004446 ORTHO05D005346 1.8e-17 92.4 46 95.7
BraA09t42108Z Brassica rapa HOM05D004446 ORTHO05D005346 1.8e-17 92.4 46 95.7
BraA10t42579Z Brassica rapa HOM05D004446 ORTHO05D005346 1.8e-17 92.4 46 95.7
Thhalv10017386m.g Eutrema salsugineum HOM05D004446 ORTHO05D005346 1.8e-17 92.4 46 95.7
Sp1g03460 Schrenkiella parvula HOM05D004446 ORTHO05D005346 1.8e-17 92.4 46 95.7
Thhalv10009042m.g Eutrema salsugineum HOM05D004446 ORTHO05D005346 3.1e-17 91.7 46 95.7
BcaB03g13480 Brassica carinata HOM05D004446 ORTHO05D005346 4.1e-17 91.3 46 93.5
CARHR127230 Cardamine hirsuta HOM05D004446 ORTHO05D005346 5.4e-17 90.9 46 93.5
Sp4g15520 Schrenkiella parvula HOM05D004446 ORTHO05D005346 7.0e-17 90.5 46 93.5
Aa31LG5G4110 Aethionema arabicum HOM05D004446 ORTHO05D005346 9.1e-17 90.1 46 91.3
AT1G04630 Arabidopsis thaliana HOM05D004446 ORTHO05D005346 1.6e-16 89.4 46 91.3
Carub.0001s0386 Capsella rubella HOM05D004446 ORTHO05D005346 1.6e-16 89.4 46 91.3
AL1G14310 Arabidopsis lyrata HOM05D004446 ORTHO05D005346 2.0e-16 89.0 46 91.3
CARHR003980 Cardamine hirsuta HOM05D004446 ORTHO05D005346 2.0e-16 89.0 46 91.3
PGR044G1212 Punica granatum HOM05D004446 ORTHO05D005346 2.0e-16 89.0 46 91.3
Aa31LG1G20240 Aethionema arabicum HOM05D004446 ORTHO05D005346 3.5e-16 88.2 46 89.1
Gohir.A10G120100 Gossypium hirsutum HOM05D004446 ORTHO05D005346 1.0e-15 86.7 46 89.1
Gohir.D10G146300 Gossypium hirsutum HOM05D004446 ORTHO05D005346 1.0e-15 86.7 46 89.1
Gorai.011G163400 Gossypium raimondii HOM05D004446 ORTHO05D005346 1.0e-15 86.7 46 89.1
Medtr1g046380 Medicago truncatula HOM05D004446 ORTHO05D005346 1.3e-15 86.3 46 87.0
Psat6g109720 Pisum sativum HOM05D004446 ORTHO05D005346 1.3e-15 86.3 46 87.0
COL.COLO4_05729 Corchorus olitorius HOM05D004446 ORTHO05D005346 1.7e-15 85.9 46 87.0
Gohir.D10G146200 Gossypium hirsutum HOM05D004446 ORTHO05D005346 1.7e-15 85.9 46 87.0
Solyc09g091170.4 Solanum lycopersicum HOM05D004446 ORTHO05D005346 1.7e-15 85.9 46 89.1
Sopen09g034140 Solanum pennellii HOM05D004446 ORTHO05D005346 1.7e-15 85.9 46 89.1
PGSC0003DMG400011587 Solanum tuberosum HOM05D004446 ORTHO05D005346 1.7e-15 85.9 46 89.1
TPR.G23640 Trifolium pratense HOM05D004446 ORTHO05D005346 1.7e-15 85.9 45 88.9
Eucgr.H02865 Eucalyptus grandis HOM05D004446 ORTHO05D005346 2.3e-15 85.5 46 87.0
Gohir.A10G120200 Gossypium hirsutum HOM05D004446 ORTHO05D005346 2.9e-15 85.1 46 87.0
Manes.03G155100 Manihot esculenta HOM05D004446 ORTHO05D005346 2.9e-15 85.1 46 87.0
Atru.chr4.1819 Acer truncatum HOM05D004446 ORTHO05D005346 3.8e-15 84.7 46 87.0
CANSAT78G0709 Cannabis sativa HOM05D004446 ORTHO05D005346 3.8e-15 84.7 46 87.0
Nitab4.5_0000451g0180 Nicotiana tabacum HOM05D004446 ORTHO05D005346 3.8e-15 84.7 46 87.0
Nitab4.5_0018759g0010 Nicotiana tabacum HOM05D004446 ORTHO05D005346 3.8e-15 84.7 46 87.0
Gorai.011G163300 Gossypium raimondii HOM05D004446 ORTHO05D005346 5.0e-15 84.3 46 84.8
Peaxi162Scf00047g01619 Petunia axillaris HOM05D004446 ORTHO05D005346 5.0e-15 84.3 46 87.0
QL06p022604 Quercus lobata HOM05D004446 ORTHO05D005346 5.0e-15 84.3 45 86.7
Hund19262 Selenicereus undatus HOM05D004446 ORTHO05D005346 5.0e-15 84.3 46 84.8
MSTRG.24643 Avicennia marina HOM05D004446 ORTHO05D005346 6.6e-15 84.0 46 84.8
Cpa.g.sc59.66 Carica papaya HOM05D004446 ORTHO05D005346 6.6e-15 84.0 46 84.8
Ciclev10006172m.g Citrus clementina HOM05D004446 ORTHO05D005346 6.6e-15 84.0 46 84.8
Thecc.04G215500 Theobroma cacao HOM05D004446 ORTHO05D005346 6.6e-15 84.0 46 84.8
ATR0736G077 Amborella trichopoda HOM05D004446 ORTHO05D005346 8.6e-15 83.6 82 54.9
arahy.Tifrunner.gnm1.ann1.Q5T5LU Arachis hypogaea HOM05D004446 ORTHO05D005346 8.6e-15 83.6 46 82.6
arahy.Tifrunner.gnm1.ann1.VC13RQ Arachis hypogaea HOM05D004446 ORTHO05D005346 8.6e-15 83.6 46 82.6
Duzib212G0284 Durio zibethinus HOM05D004446 ORTHO05D005346 8.6e-15 83.6 46 84.8
THA.LOC104816014 Tarenaya hassleriana HOM05D004446 ORTHO05D005346 8.6e-15 83.6 46 84.8
CiPaw.01G206200 Carya illinoinensis HOM05D004446 ORTHO05D005346 1.1e-14 83.2 45 86.7
ClCG06G007390 Citrullus lanatus HOM05D004446 ORTHO05D005346 1.1e-14 83.2 45 86.7
Cc00_g09360 Coffea canephora HOM05D004446 ORTHO05D005346 1.1e-14 83.2 46 82.6
CsaV3_2G012290 Cucumis sativus L. HOM05D004446 ORTHO05D005346 1.1e-14 83.2 45 86.7
Lj6g0002383 Lotus japonicus HOM05D004446 ORTHO05D005346 1.1e-14 83.2 46 82.6
RcHm_v2.0_Chr4g0396561 Rosa chinensis HOM05D004446 ORTHO05D005346 1.1e-14 83.2 46 84.8
SGA_v2.0_scaffold155G37240 Striga asiatica HOM05D004446 ORTHO05D005346 1.1e-14 83.2 46 84.8
DCAR_027363 Daucus carota HOM05D004446 ORTHO05D005346 1.5e-14 82.8 45 86.7
Lalb_Chr03g0036811 Lupinus albus HOM05D004446 ORTHO05D005346 1.5e-14 82.8 46 80.4
MD13G1228700 Malus domestica HOM05D004446 ORTHO05D005346 1.5e-14 82.8 46 82.6
Manes.15G048500 Manihot esculenta HOM05D004446 ORTHO05D005346 1.5e-14 82.8 46 84.8
Prupe.1G056200 Prunus persica HOM05D004446 ORTHO05D005346 1.5e-14 82.8 82 56.1
Ah.13g075110 Amaranthus hybridus HOM05D004446 ORTHO05D005346 1.9e-14 82.4 46 84.8
EL10Ac3g06748 Beta vulgaris HOM05D004446 ORTHO05D005346 1.9e-14 82.4 46 84.8
MELO3C023063.2 Cucumis melo HOM05D004446 ORTHO05D005346 1.9e-14 82.4 45 86.7
Lalb_Chr01g0011251 Lupinus albus HOM05D004446 ORTHO05D005346 1.9e-14 82.4 46 78.3
Potri.003G173800 Populus trichocarpa HOM05D004446 ORTHO05D005346 1.9e-14 82.4 46 82.6
Sabra01G0039000 Salix brachista HOM05D004446 ORTHO05D005346 1.9e-14 82.4 46 82.6
Sabra03G0127300 Salix brachista HOM05D004446 ORTHO05D005346 1.9e-14 82.4 46 82.6
CDE04G3627 Ceratophyllum demersum HOM05D004446 ORTHO05D005346 2.5e-14 82.0 46 82.6
Glyma.10G128100 Glycine max HOM05D004446 ORTHO05D005346 2.5e-14 82.0 45 84.4
Glyma.20G079400 Glycine max HOM05D004446 ORTHO05D005346 2.5e-14 82.0 45 84.4
CiPaw.02G127900 Carya illinoinensis HOM05D004446 ORTHO05D005346 3.3e-14 81.6 46 82.6
THA.LOC104826105 Tarenaya hassleriana HOM05D004446 ORTHO05D005346 3.3e-14 81.6 46 82.6
Aqoxy3G02680 Aquilegia oxysepala HOM05D004446 ORTHO05D005346 4.2e-14 81.3 46 82.6
Hma1.2p1_2329F.1_g320020 Hydrangea macrophylla HOM05D004446 ORTHO05D005346 4.2e-14 81.3 46 80.4
Rhsim09G0047000 Rhododendron simsii HOM05D004446 ORTHO05D005346 4.2e-14 81.3 45 84.4
RhsimUnG0181300 Rhododendron simsii HOM05D004446 ORTHO05D005346 4.2e-14 81.3 45 84.4
Sed0017441 Sechium edule HOM05D004446 ORTHO05D005346 4.2e-14 81.3 45 84.4
AUR62035332 Chenopodium quinoa HOM05D004446 ORTHO05D005346 5.5e-14 80.9 46 82.6
HanXRQChr06g0183261 Helianthus annuus HOM05D004446 ORTHO05D005346 5.5e-14 80.9 45 84.4
HanXRQChr14g0434271 Helianthus annuus HOM05D004446 ORTHO05D005346 5.5e-14 80.9 45 84.4
Lsat_1_v5_gn_2_41141 Lactuca sativa HOM05D004446 ORTHO05D005346 5.5e-14 80.9 45 84.4
Lsat_1_v5_gn_2_41880 Lactuca sativa HOM05D004446 ORTHO05D005346 5.5e-14 80.9 45 84.4
MD16G1234000 Malus domestica HOM05D004446 ORTHO05D005346 5.5e-14 80.9 46 80.4
Sc19g0005800 Simmondsia chinensis HOM05D004446 ORTHO05D005346 5.5e-14 80.9 46 84.8
Actinidia25089 Actinidia chinensis HOM05D004446 ORTHO05D005346 7.2e-14 80.5 46 80.4
Phvul.007G238600 Phaseolus vulgaris HOM05D004446 ORTHO05D005346 7.2e-14 80.5 46 80.4
Potri.001G054500 Populus trichocarpa HOM05D004446 ORTHO05D005346 7.2e-14 80.5 46 80.4
Actinidia35938 Actinidia chinensis HOM05D004446 ORTHO05D005346 9.5e-14 80.1 46 78.3
AUR62035909 Chenopodium quinoa HOM05D004446 ORTHO05D005346 9.5e-14 80.1 46 82.6
Ca_11789_v3 Cicer arietinum L. HOM05D004446 ORTHO05D005346 9.5e-14 80.1 46 78.3
vmacro00521 Vaccinium macrocarpon HOM05D004446 ORTHO05D005346 9.5e-14 80.1 45 82.2
Dinv38297 Davidia involucrata HOM05D004446 ORTHO05D005346 1.2e-13 79.7 46 80.4
FvH4_4g05410 Fragaria vesca HOM05D004446 ORTHO05D005346 1.2e-13 79.7 46 80.4
FAN07G2016 Fragaria x ananassa HOM05D004446 ORTHO05D005346 1.2e-13 79.7 46 80.4
FAN12G2493 Fragaria x ananassa HOM05D004446 ORTHO05D005346 1.2e-13 79.7 46 80.4
FAN12G4338 Fragaria x ananassa HOM05D004446 ORTHO05D005346 1.2e-13 79.7 46 80.4
SalBow2G1310 Salvia bowleyana HOM05D004446 ORTHO05D005346 1.2e-13 79.7 46 80.4
TWI09G0335 Tripterygium wilfordii HOM05D004446 ORTHO05D005346 1.2e-13 79.7 45 82.2
TWI73G1246 Tripterygium wilfordii HOM05D004446 ORTHO05D005346 1.2e-13 79.7 45 82.2
TAR362G0142 Trochodendron aralioides HOM05D004446 ORTHO05D005346 1.2e-13 79.7 46 80.4
CSS0043422 Camellia sinensis var. sinensis HOM05D004446 ORTHO05D005346 1.6e-13 79.3 45 80.0
CSS0044163 Camellia sinensis var. sinensis HOM05D004446 ORTHO05D005346 1.6e-13 79.3 45 80.0
MBI10_g44933_MAGBIO Magnolia biondii HOM05D004446 ORTHO05D005346 1.6e-13 79.3 46 80.4
Nn2g14612 Nelumbo nucifera HOM05D004446 ORTHO05D005346 1.6e-13 79.3 46 80.4
TAR365G0553 Trochodendron aralioides HOM05D004446 ORTHO05D005346 1.6e-13 79.3 46 80.4
TAR633G2153 Trochodendron aralioides HOM05D004446 ORTHO05D005346 1.6e-13 79.3 46 80.4
HPP92_008960 Vanilla planifolia HOM05D004446 ORTHO05D005346 1.6e-13 79.3 46 80.4
Nn5g27558 Nelumbo nucifera HOM05D004446 ORTHO05D005346 2.8e-13 78.6 46 80.4
Oeu008826.1 Olea europaea HOM05D004446 ORTHO05D005346 2.8e-13 78.6 46 78.3
Os03g0192400 Oryza sativa ssp. japonica HOM05D004446 ORTHO05D005346 2.8e-13 78.6 45 80.0
PSO782G0825 Papaver somniferum HOM05D004446 ORTHO05D005346 2.8e-13 78.6 45 80.0
VMungo0720G0669 Vigna mungo HOM05D004446 ORTHO05D005346 2.8e-13 78.6 45 80.0
ECA238G1521 Erigeron canadensis HOM05D004446 ORTHO05D005346 4.7e-13 77.8 45 80.0
Zm00001eb008370 Zea mays HOM05D004446 ORTHO05D005346 4.7e-13 77.8 46 73.9
Migut.G00605 Erythranthe guttata HOM05D004446 ORTHO05D005346 6.1e-13 77.4 46 78.3
vmacro22557 Vaccinium macrocarpon HOM05D004446 ORTHO05D005346 8.0e-13 77.0 45 80.0
PSO063G0015 Papaver somniferum HOM05D004446 ORTHO05D005346 2.3e-12 75.5 45 77.8
Zm00001eb401250 Zea mays HOM05D004446 ORTHO05D005346 3.0e-12 75.1 46 69.6
Zm00001eb305890 Zea mays HOM05D004446 ORTHO05D005346 2.6e-11 72.0 46 67.4
SHI08306 Sapria himalayana HOM05D004446 ORTHO05D005346 2.2e-10 68.9 46 69.6
AagrBONN_evm.TU.Sc2ySwM_344.5082 Anthoceros agrestis HOM05D004446 ORTHO05D005346 8.3e-10 67.0 45 62.2
Mapoly0001s0090 Marchantia polymorpha HOM05D004446 ORTHO05D005346 1.1e-09 66.6 45 66.7
Pp3c5_4240 Physcomitrium patens HOM05D004446 ORTHO05D005346 1.4e-09 66.2 45 64.4
SEGI_11387 Sequoiadendron giganteum HOM05D004446 ORTHO05D005346 1.4e-09 66.2 45 66.7
CBR_g9031 Chara braunii HOM05D004446 ORTHO05D005346 1.8e-09 65.9 45 62.2
Pp3c16_2570 Physcomitrium patens HOM05D004446 ORTHO05D005346 1.6e-08 62.8 44 65.9
MCO16G128 Micromonas commoda HOM05D004446 ORTHO05D005346 5.9e-08 60.8 48 54.2
Cre16.g664600 Chlamydomonas reinhardtii HOM05D004446 ORTHO05D005346 2.3e-07 58.9 41 61.0


User provided reference genes

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