Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p21510 Brassica napus HOM05D003996 ORTHO05D004665 0.0e+00 1312.7 686 100.0
BcaC01g05877 Brassica carinata HOM05D003996 ORTHO05D004665 0.0e+00 1303.9 686 99.4
BolC3t14538H Brassica oleracea HOM05D003996 ORTHO05D004665 0.0e+00 1283.9 686 98.1
A03p18420 Brassica napus HOM05D003996 ORTHO05D004665 0.0e+00 1275.8 687 97.7
BcaB01g03955 Brassica carinata HOM05D003996 ORTHO05D004665 0.0e+00 1166.8 693 89.8
Sp4g15330 Schrenkiella parvula HOM05D003996 ORTHO05D004665 0.0e+00 1135.9 690 86.5
Thhalv10016338m.g Eutrema salsugineum HOM05D003996 ORTHO05D004665 0.0e+00 1119.4 690 83.5
BraA03t11105Z Brassica rapa HOM05D003996 ORTHO05D004665 0.0e+00 1080.9 668 87.6
AL4G28490 Arabidopsis lyrata HOM05D003996 ORTHO05D004665 5.6e-311 1070.5 698 81.7
Carub.0004s1441 Capsella rubella HOM05D003996 ORTHO05D004665 3.1e-306 1054.7 699 81.0
CARHR126920 Cardamine hirsuta HOM05D003996 ORTHO05D004665 3.9e-301 1037.7 704 78.6
AT2G32970 Arabidopsis thaliana HOM05D003996 ORTHO05D004665 8.8e-301 1036.6 697 79.5
C04p16550 Brassica napus HOM05D003996 ORTHO05D004665 3.3e-292 1008.1 691 79.3
BcaC02g11363 Brassica carinata HOM05D003996 ORTHO05D004665 7.4e-292 1006.9 691 79.2
Aa31LG5G4630 Aethionema arabicum HOM05D003996 ORTHO05D004665 1.1e-290 1003.0 687 76.3
BraA05t20204Z Brassica rapa HOM05D003996 ORTHO05D004665 7.5e-284 980.3 691 77.3
A05p12660 Brassica napus HOM05D003996 ORTHO05D004665 2.8e-283 978.4 691 77.0
BolC4t23207H Brassica oleracea HOM05D003996 ORTHO05D004665 5.5e-279 964.1 699 76.7
THA.LOC104801005 Tarenaya hassleriana HOM05D003996 ORTHO05D004665 1.5e-268 929.5 692 69.7
BcaNung06410 Brassica carinata HOM05D003996 ORTHO05D004665 7.5e-268 927.2 664 80.3
THA.LOC104826134 Tarenaya hassleriana HOM05D003996 ORTHO05D004665 1.6e-262 909.4 696 69.1
Gohir.A07G168800 Gossypium hirsutum HOM05D003996 ORTHO05D004665 8.4e-227 790.8 688 62.4
Thecc.01G181600 Theobroma cacao HOM05D003996 ORTHO05D004665 7.8e-225 784.3 668 61.7
Gorai.001G196200 Gossypium raimondii HOM05D003996 ORTHO05D004665 1.0e-224 783.9 688 59.9
Gohir.D07G175200 Gossypium hirsutum HOM05D003996 ORTHO05D004665 8.7e-224 780.8 684 62.7
Duzib138G0037 Durio zibethinus HOM05D003996 ORTHO05D004665 1.1e-223 780.4 644 62.6
Potri.014G158200 Populus trichocarpa HOM05D003996 ORTHO05D004665 1.3e-222 776.9 692 59.5
Atru.chr6.3252 Acer truncatum HOM05D003996 ORTHO05D004665 6.9e-221 771.2 692 58.7
Ciclev10014490m.g Citrus clementina HOM05D003996 ORTHO05D004665 4.9e-219 765.0 692 58.8
TWI75G1163 Tripterygium wilfordii HOM05D003996 ORTHO05D004665 2.4e-218 762.7 691 58.9
TWI36G0149 Tripterygium wilfordii HOM05D003996 ORTHO05D004665 5.4e-218 761.5 681 58.4
Sabra14G0120200 Salix brachista HOM05D003996 ORTHO05D004665 9.3e-218 760.8 692 58.2
Manes.12G069800 Manihot esculenta HOM05D003996 ORTHO05D004665 3.5e-217 758.8 695 59.7
Duzib211G0403 Durio zibethinus HOM05D003996 ORTHO05D004665 6.7e-216 754.6 703 57.8
CANSAT64G2545 Cannabis sativa HOM05D003996 ORTHO05D004665 8.7e-216 754.2 691 58.6
Potri.002G224900 Populus trichocarpa HOM05D003996 ORTHO05D004665 2.5e-215 752.7 690 57.2
BcaB02g10511 Brassica carinata HOM05D003996 ORTHO05D004665 4.8e-214 748.4 499 80.4
Dinv39747 Davidia involucrata HOM05D003996 ORTHO05D004665 4.8e-214 748.4 682 61.3
QL08p030755 Quercus lobata HOM05D003996 ORTHO05D004665 1.5e-212 743.4 676 57.5
GSVIVG01030501001 Vitis vinifera HOM05D003996 ORTHO05D004665 1.3e-206 723.8 693 58.4
Gorai.001G095400 Gossypium raimondii HOM05D003996 ORTHO05D004665 7.9e-201 704.5 691 55.1
Gohir.D07G089000 Gossypium hirsutum HOM05D003996 ORTHO05D004665 1.0e-200 704.1 691 55.1
Lj6g0017826 Lotus japonicus HOM05D003996 ORTHO05D004665 1.9e-199 699.9 671 55.4
ClCG02G018060 Citrullus lanatus HOM05D003996 ORTHO05D004665 4.3e-199 698.7 688 54.7
Lalb_Chr18g0049761 Lupinus albus HOM05D003996 ORTHO05D004665 5.7e-199 698.4 661 59.2
Dinv08722 Davidia involucrata HOM05D003996 ORTHO05D004665 7.4e-199 698.0 623 59.2
PGR142G3363 Punica granatum HOM05D003996 ORTHO05D004665 9.6e-199 697.6 683 54.8
vmacro09358 Vaccinium macrocarpon HOM05D003996 ORTHO05D004665 1.3e-198 697.2 692 54.9
Eucgr.K00757 Eucalyptus grandis HOM05D003996 ORTHO05D004665 1.6e-198 696.8 695 54.1
Prupe.3G210900 Prunus persica HOM05D003996 ORTHO05D004665 2.8e-198 696.0 783 50.3
Lalb_Chr15g0080851 Lupinus albus HOM05D003996 ORTHO05D004665 1.8e-197 693.3 664 57.8
MD09G1113700 Malus domestica HOM05D003996 ORTHO05D004665 2.9e-195 686.0 755 51.7
Rhsim04G0050600 Rhododendron simsii HOM05D003996 ORTHO05D004665 2.9e-195 686.0 669 55.3
Gohir.A07G082500 Gossypium hirsutum HOM05D003996 ORTHO05D004665 6.5e-195 684.9 691 56.7
Sed0004670 Sechium edule HOM05D003996 ORTHO05D004665 1.4e-194 683.7 675 53.5
CsaV3_6G015350 Cucumis sativus L. HOM05D003996 ORTHO05D004665 7.2e-194 681.4 691 52.8
Hma1.2p1_0177F.1_g078040 Hydrangea macrophylla HOM05D003996 ORTHO05D004665 9.3e-194 681.0 651 57.1
MBI16_g26185_MAGBIO Magnolia biondii HOM05D003996 ORTHO05D004665 1.8e-192 676.8 683 53.1
Hund15359 Selenicereus undatus HOM05D003996 ORTHO05D004665 5.1e-192 675.2 649 55.6
Medtr3g080400 Medicago truncatula HOM05D003996 ORTHO05D004665 1.1e-191 674.1 656 53.2
Nn1g07292 Nelumbo nucifera HOM05D003996 ORTHO05D004665 1.5e-191 673.7 675 53.2
MELO3C019738.2 Cucumis melo HOM05D003996 ORTHO05D004665 2.5e-191 672.9 654 54.4
Phvul.006G012800 Phaseolus vulgaris HOM05D003996 ORTHO05D004665 2.5e-191 672.9 693 53.5
Manes.13G066300 Manihot esculenta HOM05D003996 ORTHO05D004665 3.7e-190 669.1 612 56.2
HanXRQChr16g0506421 Helianthus annuus HOM05D003996 ORTHO05D004665 1.1e-189 667.5 691 51.5
Glyma.20G056800 Glycine max HOM05D003996 ORTHO05D004665 1.8e-189 666.8 694 55.3
Aqoxy1G02929 Aquilegia oxysepala HOM05D003996 ORTHO05D004665 6.9e-189 664.8 689 53.0
Psat5g111680 Pisum sativum HOM05D003996 ORTHO05D004665 9.1e-189 664.5 668 55.7
Ca_16283_v3 Cicer arietinum L. HOM05D003996 ORTHO05D004665 2.6e-188 662.9 627 54.4
arahy.Tifrunner.gnm1.ann1.LM4IV6 Arachis hypogaea HOM05D003996 ORTHO05D004665 7.7e-188 661.4 643 54.6
RcHm_v2.0_Chr2g0158131 Rosa chinensis HOM05D003996 ORTHO05D004665 8.5e-187 657.9 725 50.3
PSO541G1393 Papaver somniferum HOM05D003996 ORTHO05D004665 1.4e-186 657.1 700 50.6
TPR.G29036 Trifolium pratense HOM05D003996 ORTHO05D004665 7.2e-186 654.8 656 52.1
MSTRG.14132 Avicennia marina HOM05D003996 ORTHO05D004665 2.7e-185 652.9 686 51.9
Actinidia10801 Actinidia chinensis HOM05D003996 ORTHO05D004665 3.0e-184 649.4 625 56.5
DCAR_021140 Daucus carota HOM05D003996 ORTHO05D004665 3.9e-184 649.0 693 51.5
Nn1g03381 Nelumbo nucifera HOM05D003996 ORTHO05D004665 5.1e-184 648.7 675 53.8
Migut.H01245 Erythranthe guttata HOM05D003996 ORTHO05D004665 1.1e-183 647.5 700 51.3
Sabra02G0172000 Salix brachista HOM05D003996 ORTHO05D004665 1.5e-183 647.1 713 51.1
FAN02G1294 Fragaria x ananassa HOM05D003996 ORTHO05D004665 2.6e-183 646.4 740 49.7
Cc05_g02970 Coffea canephora HOM05D003996 ORTHO05D004665 3.3e-183 646.0 678 54.7
FvH4_6g42290 Fragaria vesca HOM05D003996 ORTHO05D004665 3.3e-183 646.0 726 49.6
FAN09G4790 Fragaria x ananassa HOM05D003996 ORTHO05D004665 4.4e-183 645.6 730 49.9
PSO675G0796 Papaver somniferum HOM05D003996 ORTHO05D004665 4.4e-183 645.6 700 50.1
PSO210G1396 Papaver somniferum HOM05D003996 ORTHO05D004665 1.3e-182 644.0 681 51.4
FAN14G1081 Fragaria x ananassa HOM05D003996 ORTHO05D004665 2.2e-182 643.3 726 49.3
Hma1.2p1_2319F.1_g319820 Hydrangea macrophylla HOM05D003996 ORTHO05D004665 2.8e-182 642.9 672 54.9
Lsat_1_v5_gn_7_95060 Lactuca sativa HOM05D003996 ORTHO05D004665 4.8e-182 642.1 673 51.0
AUR62032475 Chenopodium quinoa HOM05D003996 ORTHO05D004665 6.3e-182 641.7 651 53.9
FAN05G2256 Fragaria x ananassa HOM05D003996 ORTHO05D004665 1.8e-181 640.2 742 49.1
ECA236G3366 Erigeron canadensis HOM05D003996 ORTHO05D004665 2.4e-181 639.8 659 55.1
MD17G1103800 Malus domestica HOM05D003996 ORTHO05D004665 1.5e-180 637.1 747 49.3
PSO832G2142 Papaver somniferum HOM05D003996 ORTHO05D004665 4.5e-180 635.6 683 50.5
VMungo0540G1114 Vigna mungo HOM05D003996 ORTHO05D004665 1.3e-179 634.0 648 54.6
DCAR_012922 Daucus carota HOM05D003996 ORTHO05D004665 2.2e-179 633.3 670 51.3
Peaxi162Scf00921g00252 Petunia axillaris HOM05D003996 ORTHO05D004665 7.2e-178 628.2 668 53.3
Haze_12770 Corylus avellana HOM05D003996 ORTHO05D004665 3.0e-176 622.9 561 61.1
Oeu046908.1 Olea europaea HOM05D003996 ORTHO05D004665 6.7e-176 621.7 647 51.2
Solyc07g049350.3 Solanum lycopersicum HOM05D003996 ORTHO05D004665 2.6e-175 619.8 671 51.1
Sopen07g024690 Solanum pennellii HOM05D003996 ORTHO05D004665 4.4e-175 619.0 671 50.8
PGSC0003DMG400000690 Solanum tuberosum HOM05D003996 ORTHO05D004665 5.7e-175 618.6 687 50.1
SGA_v2.0_scaffold159G37554 Striga asiatica HOM05D003996 ORTHO05D004665 7.4e-175 618.2 659 51.3
EL10Ac6g13970 Beta vulgaris HOM05D003996 ORTHO05D004665 2.8e-174 616.3 628 53.7
Lj1C780G17 Lonicera japonica HOM05D003996 ORTHO05D004665 1.8e-173 613.6 590 59.3
Nitab4.5_0008863g0010 Nicotiana tabacum HOM05D003996 ORTHO05D004665 3.1e-173 612.8 695 49.8
Ah.03g136730 Amaranthus hybridus HOM05D003996 ORTHO05D004665 2.9e-171 606.3 637 52.7
ECA234G3864 Erigeron canadensis HOM05D003996 ORTHO05D004665 2.9e-171 606.3 646 50.3
HanXRQChr10g0310161 Helianthus annuus HOM05D003996 ORTHO05D004665 2.9e-171 606.3 643 51.3
Oeu010926.4 Olea europaea HOM05D003996 ORTHO05D004665 9.4e-170 601.3 614 52.9
SalBow7G2067 Salvia bowleyana HOM05D003996 ORTHO05D004665 1.0e-168 597.8 658 49.8
TAR626G1560 Trochodendron aralioides HOM05D003996 ORTHO05D004665 2.2e-166 590.1 695 50.4
AUR62040130 Chenopodium quinoa HOM05D003996 ORTHO05D004665 3.7e-166 589.3 649 51.2
CAN.G1493.1 Capsicum annuum HOM05D003996 ORTHO05D004665 4.8e-166 589.0 649 50.4
Migut.M00422 Erythranthe guttata HOM05D003996 ORTHO05D004665 1.4e-165 587.4 679 48.5
Zm00001eb256350 Zea mays HOM05D003996 ORTHO05D004665 2.4e-165 586.6 696 47.4
Nitab4.5_0000482g0250 Nicotiana tabacum HOM05D003996 ORTHO05D004665 5.3e-165 585.5 681 49.0
arahy.Tifrunner.gnm1.ann1.ZWYX82 Arachis hypogaea HOM05D003996 ORTHO05D004665 2.9e-163 579.7 624 51.4
ECA240G4712 Erigeron canadensis HOM05D003996 ORTHO05D004665 1.5e-162 577.4 667 50.7
CSS0033567 Camellia sinensis var. sinensis HOM05D003996 ORTHO05D004665 1.4e-160 570.9 590 53.6
HanXRQChr10g0306531 Helianthus annuus HOM05D003996 ORTHO05D004665 9.8e-159 564.7 652 46.3
Sed0016081 Sechium edule HOM05D003996 ORTHO05D004665 1.4e-157 560.8 618 50.0
Os02g0771800 Oryza sativa ssp. japonica HOM05D003996 ORTHO05D004665 7.0e-157 558.5 680 46.8
SHI10040 Sapria himalayana HOM05D003996 ORTHO05D000023 4.5e-156 555.8 665 47.8
Lsat_1_v5_gn_5_124380 Lactuca sativa HOM05D003996 ORTHO05D004665 2.3e-155 553.5 664 47.3
SGA_v2.0_scaffold70G23382 Striga asiatica HOM05D003996 ORTHO05D004665 5.5e-154 548.9 648 46.9
Lj8A129T88 Lonicera japonica HOM05D003996 ORTHO05D004665 1.6e-153 547.4 686 49.6
Lsat_1_v5_gn_9_105800 Lactuca sativa HOM05D003996 ORTHO05D004665 2.8e-153 546.6 662 48.3
HPP92_010852 Vanilla planifolia HOM05D003996 ORTHO05D004665 5.0e-147 525.8 652 45.6
CiPaw.04G110600 Carya illinoinensis HOM05D003996 ORTHO05D004665 1.6e-145 520.8 486 55.1
CDE07G0144 Ceratophyllum demersum HOM05D003996 ORTHO05D004665 4.0e-144 516.2 698 44.1
Glyma.13G026700 Glycine max HOM05D003996 ORTHO05D004665 3.4e-143 513.1 464 58.2
DCAR_023146 Daucus carota HOM05D003996 ORTHO05D004665 4.1e-141 506.1 696 47.0
Sc06g0009640 Simmondsia chinensis HOM05D003996 ORTHO05D004665 5.4e-141 505.8 478 55.2
COL.COLO4_21871 Corchorus olitorius HOM05D003996 ORTHO05D004665 1.3e-134 484.6 417 62.4
unitig_26.g9924 Utricularia gibba HOM05D003996 ORTHO05D004665 1.6e-124 451.1 505 48.3
SEGI_14118 Sequoiadendron giganteum HOM05D003996 ORTHO05D004665 9.6e-114 415.2 744 38.2
AUR62001107 Chenopodium quinoa HOM05D003996 ORTHO05D004665 1.8e-112 411.0 682 38.0
AUR62008931 Chenopodium quinoa HOM05D003996 ORTHO05D004665 6.4e-110 402.5 699 37.1
Sc05g0002040 Simmondsia chinensis HOM05D003996 ORTHO05D004665 8.4e-110 402.1 650 37.7
Duzib133G0500 Durio zibethinus HOM05D003996 ORTHO05D004665 1.1e-109 401.7 636 39.8
CiPaw.03G155400 Carya illinoinensis HOM05D003996 ORTHO05D004665 1.4e-109 401.4 403 53.3
CANSAT01G0074 Cannabis sativa HOM05D003996 ORTHO05D004665 3.0e-107 393.7 666 38.6
EL10Ac7g17863 Beta vulgaris HOM05D003996 ORTHO05D004665 2.4e-101 374.0 660 36.8
Pp3c17_9940 Physcomitrium patens HOM05D003996 ORTHO05D004665 1.9e-98 364.4 742 36.5
Hund18404 Selenicereus undatus HOM05D003996 ORTHO05D004665 4.3e-98 363.2 663 36.3
GSVIVG01003286001 Vitis vinifera HOM05D003996 ORTHO05D004665 5.3e-96 356.3 629 37.4
SMO361G0133 Selaginella moellendorffii HOM05D003996 ORTHO05D004665 4.6e-92 343.2 649 38.1
Pp3c9_1750 Physcomitrium patens HOM05D003996 ORTHO05D004665 1.9e-90 337.8 758 33.2
Mapoly0071s0059 Marchantia polymorpha HOM05D003996 ORTHO05D004665 1.3e-86 325.1 802 32.2
CANSAT01G3237 Cannabis sativa HOM05D003996 ORTHO05D004665 2.2e-86 324.3 499 40.3
Zm00001eb297890 Zea mays HOM05D003996 ORTHO05D004665 3.0e-83 313.9 623 35.2
Manes.13G046600 Manihot esculenta HOM05D003996 ORTHO05D004665 6.7e-83 312.8 533 40.3
HPP92_011782 Vanilla planifolia HOM05D003996 ORTHO05D004665 5.7e-82 309.7 338 46.7
Ah.08g214450 Amaranthus hybridus HOM05D003996 ORTHO05D004665 1.4e-75 288.5 505 37.4
Cpa.g.sc132.19 Carica papaya HOM05D003996 ORTHO05D004665 1.5e-74 285.0 322 50.0
AagrBONN_evm.TU.Sc2ySwM_368.1061 Anthoceros agrestis HOM05D003996 ORTHO05D004665 2.4e-72 277.7 744 30.5
CiPaw.03G155500 Carya illinoinensis HOM05D003996 ORTHO05D004665 3.8e-70 270.4 221 61.5
Hund05567 Selenicereus undatus HOM05D003996 ORTHO05D004665 1.9e-69 268.1 492 35.4
COL.COLO4_21870 Corchorus olitorius HOM05D003996 ORTHO05D004665 1.2e-68 265.4 215 64.2
CBR_g29855 Chara braunii HOM05D003996 ORTHO05D004665 1.3e-57 228.8 331 39.6
C09p40870 Brassica napus HOM05D003996 ORTHO05D004665 5.4e-32 143.7 69 97.1
Actinidia03595 Actinidia chinensis HOM05D003996 ORTHO05D004665 7.3e-29 133.3 108 62.0
Actinidia03596 Actinidia chinensis HOM05D003996 ORTHO05D004665 2.3e-27 128.3 280 33.2
Actinidia03594 Actinidia chinensis HOM05D003996 ORTHO05D004665 9.8e-26 122.9 92 64.1
Thecc.01G223400 Theobroma cacao HOM05D003996 ORTHO05D004665 1.9e-21 108.6 192 35.9
CiPaw.04G110700 Carya illinoinensis HOM05D003996 ORTHO05D004665 1.5e-18 99.0 66 71.2
Hund15378 Selenicereus undatus HOM05D003996 ORTHO05D004665 1.5e-18 99.0 111 50.5
Cre12.g513852 Chlamydomonas reinhardtii HOM05D003996 ORTHO05D004665 7.3e-13 80.1 156 34.0
MCO15G069 Micromonas commoda HOM05D003996 ORTHO05D004665 7.3e-13 80.1 161 34.2
BcaC09g50171 Brassica carinata HOM05D003996 ORTHO05D092235 9.9e-10 69.7 49 71.4
Ah.08g214440 Amaranthus hybridus HOM05D003996 ORTHO05D004665 2.2e-09 68.6 60 55.0
DCAR_019433 Daucus carota HOM05D003996 ORTHO05D004665 8.3e-09 66.6 54 63.0
unitig_26.g9925 Utricularia gibba HOM05D003996 ORTHO05D004665 2.4e-08 65.1 52 61.5
Os05g0597400 Oryza sativa ssp. japonica HOM05D003996 ORTHO05D004665 4.1e-08 64.3 54 53.7


User provided reference genes

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