Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p21470 Brassica napus HOM05D014395 ORTHO05D017511 3.6e-132 474.9 244 100.0
BolC3t14533H Brassica oleracea HOM05D014395 ORTHO05D017511 3.6e-132 474.9 244 100.0
BcaC01g05882 Brassica carinata HOM05D014395 ORTHO05D017511 8.2e-60 234.6 123 99.2
BcaC08g44985 Brassica carinata HOM05D014395 ORTHO05D017511 1.2e-29 134.4 121 60.3
C06p26160 Brassica napus HOM05D014395 ORTHO05D017511 1.2e-29 134.4 121 60.3
Sp5g15080 Schrenkiella parvula HOM05D014395 ORTHO05D017511 1.0e-09 68.2 110 43.6
BcaB01g03960 Brassica carinata HOM05D003322 ORTHO05D017511 1.3e-09 67.8 62 59.7
Carub.0004s1448 Capsella rubella HOM05D014395 ORTHO05D017511 3.3e-08 63.2 107 41.1
TAR374G0254 Trochodendron aralioides HOM05D003322 ORTHO05D004228 4.3e-08 62.8 49 59.2
Aa31LG5G4180 Aethionema arabicum HOM05D003322 ORTHO05D004228 9.5e-08 61.6 49 63.3
AL4G28590 Arabidopsis lyrata HOM05D003322 ORTHO05D004228 9.5e-08 61.6 49 63.3
AT2G33040 Arabidopsis thaliana HOM05D003322 ORTHO05D004228 9.5e-08 61.6 49 63.3
BcaB01g01791 Brassica carinata HOM05D003322 ORTHO05D004228 9.5e-08 61.6 49 63.3
BcaB01g03961 Brassica carinata HOM05D003322 ORTHO05D004228 9.5e-08 61.6 49 63.3
BcaB02g10520 Brassica carinata HOM05D003322 ORTHO05D004228 9.5e-08 61.6 49 63.3
BcaB06g28649 Brassica carinata HOM05D003322 ORTHO05D004228 9.5e-08 61.6 49 63.3
BcaC01g05883 Brassica carinata HOM05D003322 ORTHO05D004228 9.5e-08 61.6 49 63.3
BcaC02g07863 Brassica carinata HOM05D003322 ORTHO05D004228 9.5e-08 61.6 49 63.3
BcaC02g11376 Brassica carinata HOM05D003322 ORTHO05D004228 9.5e-08 61.6 49 63.3
A03p18380 Brassica napus HOM05D003322 ORTHO05D004228 9.5e-08 61.6 49 63.3
A04p25420 Brassica napus HOM05D000074 ORTHO05D000696 9.5e-08 61.6 49 63.3
A05p12580 Brassica napus HOM05D003322 ORTHO05D004228 9.5e-08 61.6 49 63.3
C03p21450 Brassica napus HOM05D003322 ORTHO05D004228 9.5e-08 61.6 49 63.3
C04p16450 Brassica napus HOM05D003322 ORTHO05D004228 9.5e-08 61.6 49 63.3
C04p62560 Brassica napus HOM05D000074 ORTHO05D000696 9.5e-08 61.6 49 63.3
BolC3t14530H Brassica oleracea HOM05D003322 ORTHO05D004228 9.5e-08 61.6 49 63.3
BolC4t23195H Brassica oleracea HOM05D003322 ORTHO05D004228 9.5e-08 61.6 49 63.3
BolC4t27737H Brassica oleracea HOM05D003322 ORTHO05D004228 9.5e-08 61.6 49 63.3
BraA03t11101Z Brassica rapa HOM05D003322 ORTHO05D004228 9.5e-08 61.6 49 63.3
BraA04t18045Z Brassica rapa HOM05D003322 ORTHO05D004228 9.5e-08 61.6 49 63.3
BraA05t20195Z Brassica rapa HOM05D003322 ORTHO05D004228 9.5e-08 61.6 49 63.3
Carub.0004s1452 Capsella rubella HOM05D003322 ORTHO05D004228 9.5e-08 61.6 49 63.3
CARHR126980 Cardamine hirsuta HOM05D003322 ORTHO05D004228 9.5e-08 61.6 49 63.3
Thhalv10016929m.g Eutrema salsugineum HOM05D003322 ORTHO05D004228 9.5e-08 61.6 49 63.3
Sp4g15380 Schrenkiella parvula HOM05D003322 ORTHO05D004228 9.5e-08 61.6 49 63.3
THA.LOC104801002 Tarenaya hassleriana HOM05D003322 ORTHO05D004228 2.1e-07 60.5 49 61.2
THA.LOC104826136 Tarenaya hassleriana HOM05D003322 ORTHO05D004228 2.1e-07 60.5 49 61.2
Ciclev10021169m.g Citrus clementina HOM05D003322 ORTHO05D004228 3.6e-07 59.7 49 61.2
DCAR_002146 Daucus carota HOM05D003322 ORTHO05D004228 3.6e-07 59.7 50 60.0
DCAR_023345 Daucus carota HOM05D003322 ORTHO05D004228 3.6e-07 59.7 50 60.0
MD06G1202600 Malus domestica HOM05D003322 ORTHO05D004228 3.6e-07 59.7 50 60.0
MD14G1211800 Malus domestica HOM05D003322 ORTHO05D004228 3.6e-07 59.7 50 60.0
QL10p019482 Quercus lobata HOM05D003322 ORTHO05D000004 3.6e-07 59.7 49 61.2
Lj5A435G20 Lonicera japonica HOM05D003322 ORTHO05D004228 4.7e-07 59.3 50 58.0
MBI11_g00916_MAGBIO Magnolia biondii HOM05D003322 ORTHO05D004228 4.7e-07 59.3 49 59.2
C06p50470 Brassica napus HOM05D003322 ORTHO05D021835 6.2e-07 58.9 49 61.2
C06p50480 Brassica napus HOM05D003322 ORTHO05D021835 6.2e-07 58.9 49 61.2
C06p50490 Brassica napus HOM05D003322 ORTHO05D021835 6.2e-07 58.9 49 61.2
BolC6t40073H Brassica oleracea HOM05D003322 ORTHO05D021835 6.2e-07 58.9 49 61.2
BolC6t40074H Brassica oleracea HOM05D003322 ORTHO05D021835 6.2e-07 58.9 49 61.2
Eucgr.B00589 Eucalyptus grandis HOM05D003322 ORTHO05D004228 6.2e-07 58.9 35 82.9
Actinidia04825 Actinidia chinensis HOM05D004985 ORTHO05D004228 8.1e-07 58.5 50 60.0
Actinidia16126 Actinidia chinensis HOM05D003322 ORTHO05D005912 8.1e-07 58.5 35 82.9
EL10Ac5g11127 Beta vulgaris HOM05D003322 ORTHO05D004228 8.1e-07 58.5 50 58.0
BcaC08g47262 Brassica carinata HOM05D003322 ORTHO05D021835 8.1e-07 58.5 53 56.6
CSS0041329 Camellia sinensis var. sinensis HOM05D003322 ORTHO05D004228 8.1e-07 58.5 50 58.0
CDE02G3519 Ceratophyllum demersum HOM05D003322 ORTHO05D004228 8.1e-07 58.5 50 58.0
ClCG04G011820 Citrullus lanatus HOM05D003322 ORTHO05D004228 8.1e-07 58.5 49 59.2
COL.COLO4_06862 Corchorus olitorius HOM05D003322 ORTHO05D004228 8.1e-07 58.5 50 58.0
Haze_07721 Corylus avellana HOM05D003322 ORTHO05D004228 8.1e-07 58.5 50 58.0
Haze_07723 Corylus avellana HOM05D003322 ORTHO05D004228 8.1e-07 58.5 50 58.0
Duzib068G1237 Durio zibethinus HOM05D003322 ORTHO05D004228 8.1e-07 58.5 49 59.2
Gohir.A03G070000 Gossypium hirsutum HOM05D003322 ORTHO05D004228 8.1e-07 58.5 49 59.2
Gohir.A07G068700 Gossypium hirsutum HOM05D003322 ORTHO05D004228 8.1e-07 58.5 49 59.2
Gohir.A12G182500 Gossypium hirsutum HOM05D003322 ORTHO05D004228 8.1e-07 58.5 49 59.2
Gohir.D03G096600 Gossypium hirsutum HOM05D003322 ORTHO05D004228 8.1e-07 58.5 49 59.2
Gohir.D07G073200 Gossypium hirsutum HOM05D003322 ORTHO05D004228 8.1e-07 58.5 49 59.2
Gohir.D12G185600 Gossypium hirsutum HOM05D003322 ORTHO05D004228 8.1e-07 58.5 49 59.2
Gorai.001G077400 Gossypium raimondii HOM05D003322 ORTHO05D004228 8.1e-07 58.5 49 59.2
Gorai.003G101200 Gossypium raimondii HOM05D003322 ORTHO05D004228 8.1e-07 58.5 49 59.2
Gorai.008G199000 Gossypium raimondii HOM05D003322 ORTHO05D004228 8.1e-07 58.5 49 59.2
Lalb_Chr08g0246391 Lupinus albus HOM05D003322 ORTHO05D004228 8.1e-07 58.5 50 58.0
Lalb_Chr11g0061621 Lupinus albus HOM05D003322 ORTHO05D004228 8.1e-07 58.5 50 58.0
Manes.06G084900 Manihot esculenta HOM05D003322 ORTHO05D004228 8.1e-07 58.5 49 59.2
Manes.14G085400 Manihot esculenta HOM05D003322 ORTHO05D004228 8.1e-07 58.5 49 59.2
Medtr4g129790 Medicago truncatula HOM05D003322 ORTHO05D004228 8.1e-07 58.5 50 58.0
Nn8g40879 Nelumbo nucifera HOM05D003322 ORTHO05D004228 8.1e-07 58.5 49 59.2
Prupe.5G204800 Prunus persica HOM05D003322 ORTHO05D004228 8.1e-07 58.5 50 58.0
Sc12g0006660 Simmondsia chinensis HOM05D003322 ORTHO05D004228 8.1e-07 58.5 50 58.0
Thecc.03G101400 Theobroma cacao HOM05D003322 ORTHO05D004228 8.1e-07 58.5 49 59.2
HPP92_009478 Vanilla planifolia HOM05D003322 ORTHO05D004228 8.1e-07 58.5 50 56.0
Atru.chr9.581 Acer truncatum HOM05D003322 ORTHO05D004228 1.1e-06 58.2 49 57.1
MSTRG.22966 Avicennia marina HOM05D003322 ORTHO05D004228 1.1e-06 58.2 50 58.0
Cc03_g13130 Coffea canephora HOM05D003322 ORTHO05D004228 1.1e-06 58.2 49 57.1
Duzib205G0199 Durio zibethinus HOM05D003322 ORTHO05D004228 1.1e-06 58.2 49 59.2
Migut.D01664 Erythranthe guttata HOM05D003322 ORTHO05D004228 1.1e-06 58.2 50 56.0
HanXRQChr12g0374611 Helianthus annuus HOM05D003322 ORTHO05D004228 1.1e-06 58.2 50 56.0
HanXRQChr12g0374621 Helianthus annuus HOM05D003322 ORTHO05D004228 1.1e-06 58.2 50 56.0
Hma1.2p1_0060F.1_g033120 Hydrangea macrophylla HOM05D003322 ORTHO05D004228 1.1e-06 58.2 50 56.0
Lsat_1_v5_gn_8_121700 Lactuca sativa HOM05D003322 ORTHO05D004228 1.1e-06 58.2 50 56.0
Lj1g0009894 Lotus japonicus HOM05D003322 ORTHO05D004228 1.1e-06 58.2 50 58.0
MBI13_g34044_MAGBIO Magnolia biondii HOM05D003322 ORTHO05D004228 1.1e-06 58.2 49 57.1
Oeu014404.1 Olea europaea HOM05D003322 ORTHO05D004228 1.1e-06 58.2 50 56.0
Oeu061163.1 Olea europaea HOM05D003322 ORTHO05D004228 1.1e-06 58.2 50 56.0
Peaxi162Scf00013g00630 Petunia axillaris HOM05D003322 ORTHO05D004228 1.1e-06 58.2 49 57.1
Peaxi162Scf00201g00237 Petunia axillaris HOM05D003322 ORTHO05D004228 1.1e-06 58.2 50 56.0
Phvul.009G191400 Phaseolus vulgaris HOM05D003322 ORTHO05D004228 1.1e-06 58.2 50 58.0
QL10p019459 Quercus lobata HOM05D003322 ORTHO05D004228 1.1e-06 58.2 50 56.0
Hund09909 Selenicereus undatus HOM05D003322 ORTHO05D004228 1.1e-06 58.2 50 58.0
TWI60G0212 Tripterygium wilfordii HOM05D003322 ORTHO05D004228 1.1e-06 58.2 49 59.2
Cfa019330 Carpinus fangiana HOM05D003322 ORTHO05D004228 1.4e-06 57.8 47 59.6
Ca_21165_v3 Cicer arietinum L. HOM05D003322 ORTHO05D004228 1.4e-06 57.8 41 70.7
ECA233G0034 Erigeron canadensis HOM05D003322 ORTHO05D004228 1.4e-06 57.8 50 56.0
Os10g0320400 Oryza sativa ssp. japonica HOM05D003322 ORTHO05D004228 1.4e-06 57.8 50 56.0
Psat0s2642g0080 Pisum sativum HOM05D003322 ORTHO05D004228 1.4e-06 57.8 50 56.0
SalBow5G1734 Salvia bowleyana HOM05D003322 ORTHO05D004228 1.4e-06 57.8 50 56.0
SGA_v2.0_scaffold28G11757 Striga asiatica HOM05D003322 ORTHO05D004228 1.4e-06 57.8 50 56.0
TPR.G24877 Trifolium pratense HOM05D003322 ORTHO05D004228 1.4e-06 57.8 50 56.0
Ah.11g047800 Amaranthus hybridus HOM05D003322 ORTHO05D004228 1.8e-06 57.4 50 56.0
CANSAT80G2201 Cannabis sativa HOM05D003322 ORTHO05D004228 1.8e-06 57.4 50 54.0
Cpa.g.sc25.176 Carica papaya HOM05D003322 ORTHO05D004228 1.8e-06 57.4 49 57.1
CDE05G1000 Ceratophyllum demersum HOM05D003322 ORTHO05D004228 1.8e-06 57.4 50 56.0
MELO3C002027.2 Cucumis melo HOM05D003322 ORTHO05D004228 1.8e-06 57.4 49 57.1
CsaV3_1G005960 Cucumis sativus L. HOM05D003322 ORTHO05D004228 1.8e-06 57.4 49 57.1
Glyma.04G162800 Glycine max HOM05D003322 ORTHO05D004228 1.8e-06 57.4 49 57.1
Glyma.06G203200 Glycine max HOM05D003322 ORTHO05D004228 1.8e-06 57.4 49 57.1
HanXRQChr09g0248401 Helianthus annuus HOM05D003322 ORTHO05D004228 1.8e-06 57.4 50 56.0
HanXRQChr09g0248501 Helianthus annuus HOM05D003322 ORTHO05D004228 1.8e-06 57.4 50 56.0
HanXRQChr09g0248941 Helianthus annuus HOM05D003322 ORTHO05D004228 1.8e-06 57.4 50 56.0
PGR083G0152 Punica granatum HOM05D003322 ORTHO05D004228 1.8e-06 57.4 49 57.1
Sc10g0009720 Simmondsia chinensis HOM05D003322 ORTHO05D004228 1.8e-06 57.4 50 56.0
SGA_v2.0_scaffold25G10961 Striga asiatica HOM05D003322 ORTHO05D004228 1.8e-06 57.4 50 56.0
VMungo1309G2770 Vigna mungo HOM05D003322 ORTHO05D004228 1.8e-06 57.4 50 56.0
GSVIVG01007868001 Vitis vinifera HOM05D003322 ORTHO05D004228 1.8e-06 57.4 49 57.1
AUR62008524 Chenopodium quinoa HOM05D003322 ORTHO05D004228 2.4e-06 57.0 50 56.0
FvH4_5g13860 Fragaria vesca HOM05D003322 ORTHO05D004228 2.4e-06 57.0 50 56.0
FAN08G0721 Fragaria x ananassa HOM05D003322 ORTHO05D004228 2.4e-06 57.0 50 56.0
FAN13G2646 Fragaria x ananassa HOM05D003322 ORTHO05D004228 2.4e-06 57.0 50 56.0
Gohir.D06G107050 Gossypium hirsutum HOM05D003322 ORTHO05D004228 2.4e-06 57.0 49 57.1
Peaxi162Scf00702g00035 Petunia axillaris HOM05D003322 ORTHO05D004228 2.4e-06 57.0 49 55.1
Rhsim08G0146100 Rhododendron simsii HOM05D003322 ORTHO05D004228 2.4e-06 57.0 50 54.0
RcHm_v2.0_Chr7g0183071 Rosa chinensis HOM05D003322 ORTHO05D004228 2.4e-06 57.0 50 56.0
Sed0007546 Sechium edule HOM05D003322 ORTHO05D004228 2.4e-06 57.0 50 54.0
unitig_46.g18457 Utricularia gibba HOM05D003322 ORTHO05D004228 2.4e-06 57.0 50 54.0
Gorai.010G121700 Gossypium raimondii HOM05D003322 ORTHO05D004228 3.1e-06 56.6 49 57.1
Nitab4.5_0001485g0170 Nicotiana tabacum HOM05D003322 ORTHO05D004228 3.1e-06 56.6 49 55.1
Potri.015G057700 Populus trichocarpa HOM05D003322 ORTHO05D004228 3.1e-06 56.6 49 55.1
TWI81G0037 Tripterygium wilfordii HOM05D003322 ORTHO05D004228 3.1e-06 56.6 49 57.1
Aqoxy6G00786 Aquilegia oxysepala HOM05D003322 ORTHO05D004228 4.0e-06 56.2 49 55.1
Aqoxy6G02351 Aquilegia oxysepala HOM05D003322 ORTHO05D004228 4.0e-06 56.2 49 55.1
PSO017G5003 Papaver somniferum HOM05D003322 ORTHO05D004228 4.0e-06 56.2 35 77.1
PSO478G0061 Papaver somniferum HOM05D003322 ORTHO05D004228 4.0e-06 56.2 35 77.1
Sabra15G0083800 Salix brachista HOM05D003322 ORTHO05D004228 4.0e-06 56.2 49 55.1
CARHR127030 Cardamine hirsuta HOM05D003322 ORTHO05D004228 5.2e-06 55.8 35 80.0
CiPaw.11G053100 Carya illinoinensis HOM05D003322 ORTHO05D004228 5.2e-06 55.8 50 54.0
CiPaw.11G053200 Carya illinoinensis HOM05D003322 ORTHO05D004228 5.2e-06 55.8 50 54.0
AUR62021565 Chenopodium quinoa HOM05D003322 ORTHO05D004228 5.2e-06 55.8 50 54.0
BcaC08g44984 Brassica carinata HOM05D003322 ORTHO05D004228 6.8e-06 55.5 38 73.7
SEGI_19317 Sequoiadendron giganteum HOM05D003322 ORTHO05D004228 6.8e-06 55.5 36 75.0
arahy.Tifrunner.gnm1.ann1.0NDH2Q Arachis hypogaea HOM05D003322 ORTHO05D004228 8.9e-06 55.1 49 53.1
arahy.Tifrunner.gnm1.ann1.54SFA6 Arachis hypogaea HOM05D003322 ORTHO05D004228 8.9e-06 55.1 49 53.1
Dinv17411 Davidia involucrata HOM05D003322 ORTHO05D004228 8.9e-06 55.1 35 74.3
Gorai.004G104400 Gossypium raimondii HOM05D003322 ORTHO05D004228 8.9e-06 55.1 35 77.1
Zm00001eb008610 Zea mays HOM05D003322 ORTHO05D004228 8.9e-06 55.1 49 53.1


User provided reference genes

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