Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p21260 Brassica napus HOM05D004255 ORTHO05D004815 1.2e-107 394.8 203 100.0
BolC3t14507H Brassica oleracea HOM05D004255 ORTHO05D004815 1.9e-105 387.5 203 98.5
BcaC01g05901 Brassica carinata HOM05D004255 ORTHO05D004815 1.7e-101 374.4 203 95.1
BraA03t11081Z Brassica rapa HOM05D004255 ORTHO05D004815 3.9e-98 363.2 203 93.6
A03p18210 Brassica napus HOM05D004255 ORTHO05D004815 5.6e-97 359.4 203 92.6
BcaB01g03971 Brassica carinata HOM05D004255 ORTHO05D004815 8.4e-85 318.9 207 83.1
Sp4g14950 Schrenkiella parvula HOM05D004255 ORTHO05D004815 3.7e-72 276.9 205 69.3
Thhalv10017786m.g Eutrema salsugineum HOM05D004255 ORTHO05D004815 8.2e-72 275.8 212 66.5
Carub.0004s1396 Capsella rubella HOM05D004255 ORTHO05D004815 1.4e-68 265.0 213 65.3
CARHR126490 Cardamine hirsuta HOM05D004255 ORTHO05D004815 1.2e-67 261.9 213 66.7
AT2G32630 Arabidopsis thaliana HOM05D004255 ORTHO05D004815 1.9e-65 254.6 205 67.3
Aa31LG5G4720 Aethionema arabicum HOM05D004255 ORTHO05D004815 3.2e-60 237.3 205 62.4
CARHR004520 Cardamine hirsuta HOM05D004255 ORTHO05D004815 2.5e-52 211.1 213 55.4
THA.LOC104816036 Tarenaya hassleriana HOM05D004255 ORTHO05D004815 2.2e-48 198.0 202 55.9
RcHm_v2.0_Chr3g0470041 Rosa chinensis HOM05D004255 ORTHO05D004815 6.1e-27 126.7 181 40.9
Thecc.05G064100 Theobroma cacao HOM05D004255 ORTHO05D004815 6.1e-27 126.7 196 43.4
QL07p044001 Quercus lobata HOM05D004255 ORTHO05D004815 1.4e-26 125.6 206 40.3
Ciclev10011284m.g Citrus clementina HOM05D004255 ORTHO05D004815 2.3e-26 124.8 185 40.0
CsaV3_3G035890 Cucumis sativus L. HOM05D004255 ORTHO05D004815 2.3e-26 124.8 179 40.8
ClCG10G020210 Citrullus lanatus HOM05D004255 ORTHO05D004815 3.0e-26 124.4 179 40.2
Cc06_g04130 Coffea canephora HOM05D004255 ORTHO05D004815 3.0e-26 124.4 171 40.9
Haze_22852 Corylus avellana HOM05D000010 ORTHO05D000302 4.0e-26 124.0 198 40.4
Sopen10g033550 Solanum pennellii HOM05D004255 ORTHO05D004815 5.2e-26 123.6 157 44.6
Dinv37304 Davidia involucrata HOM05D004255 ORTHO05D004815 6.8e-26 123.2 158 44.9
Solyc10g084090.3 Solanum lycopersicum HOM05D004255 ORTHO05D004815 8.8e-26 122.9 157 43.9
Atru.chr8.1831 Acer truncatum HOM05D004255 ORTHO05D004815 1.2e-25 122.5 179 40.8
Potri.003G008900 Populus trichocarpa HOM05D004255 ORTHO05D004815 2.0e-25 121.7 199 38.2
Manes.13G072800 Manihot esculenta HOM05D004255 ORTHO05D004815 3.4e-25 120.9 205 38.0
Cfa017586 Carpinus fangiana HOM05D004255 ORTHO05D004815 5.7e-25 120.2 198 39.9
MELO3C009348.2 Cucumis melo HOM05D004255 ORTHO05D004815 7.5e-25 119.8 179 38.5
CiPaw.09G173800 Carya illinoinensis HOM05D004255 ORTHO05D004815 9.8e-25 119.4 181 41.4
DCAR_014992 Daucus carota HOM05D004255 ORTHO05D004815 1.3e-24 119.0 195 36.4
CSS0008426 Camellia sinensis var. sinensis HOM05D004255 ORTHO05D004815 2.8e-24 117.9 205 38.0
FvH4_6g16190 Fragaria vesca HOM05D004255 ORTHO05D004815 6.3e-24 116.7 180 39.4
FAN14G1284 Fragaria x ananassa HOM05D004255 ORTHO05D004815 6.3e-24 116.7 180 39.4
Lj4g0021155 Lotus japonicus HOM05D004255 ORTHO05D004815 8.3e-24 116.3 152 44.7
Rhsim07G0183700 Rhododendron simsii HOM05D004255 ORTHO05D004815 1.4e-23 115.5 194 37.6
FAN05G2535 Fragaria x ananassa HOM05D004255 ORTHO05D004815 1.8e-23 115.2 157 42.0
CANSAT80G1593 Cannabis sativa HOM05D004255 ORTHO05D004815 3.1e-23 114.4 196 36.2
AUR62040455 Chenopodium quinoa HOM05D004255 ORTHO05D004815 4.1e-23 114.0 195 38.5
Glyma.19G000100 Glycine max HOM05D004255 ORTHO05D004815 4.1e-23 114.0 201 36.8
Peaxi162Scf00311g00013 Petunia axillaris HOM05D004255 ORTHO05D004815 4.1e-23 114.0 158 39.9
TAR633G1109 Trochodendron aralioides HOM05D004255 ORTHO05D004815 4.1e-23 114.0 178 40.4
Rhsim02G0187700 Rhododendron simsii HOM05D004255 ORTHO05D004815 7.0e-23 113.2 194 37.1
CAN.G1169.8 Capsicum annuum HOM05D004255 ORTHO05D004815 1.2e-22 112.5 184 38.6
Migut.J00519 Erythranthe guttata HOM05D004255 ORTHO05D004815 1.6e-22 112.1 171 41.5
TPR.G23963 Trifolium pratense HOM05D004255 ORTHO05D004815 1.6e-22 112.1 152 43.4
Duzib106G1941 Durio zibethinus HOM05D004255 ORTHO05D004815 2.7e-22 111.3 196 38.8
Nitab4.5_0005518g0020 Nicotiana tabacum HOM05D004255 ORTHO05D004815 2.7e-22 111.3 173 40.5
Gorai.006G165100 Gossypium raimondii HOM05D004255 ORTHO05D004815 7.7e-22 109.8 195 39.0
Oeu047722.1 Olea europaea HOM05D004255 ORTHO05D004815 7.7e-22 109.8 171 37.4
Atru.chr12.311 Acer truncatum HOM05D004255 ORTHO05D004815 1.0e-21 109.4 172 37.8
Phvul.007G232500 Phaseolus vulgaris HOM05D004255 ORTHO05D004815 1.0e-21 109.4 146 43.2
TAR633G2036 Trochodendron aralioides HOM05D004255 ORTHO05D004815 1.3e-21 109.0 172 40.7
Gohir.D09G143800 Gossypium hirsutum HOM05D004255 ORTHO05D004815 1.7e-21 108.6 195 39.0
SHI12481 Sapria himalayana HOM05D004255 ORTHO05D004815 1.7e-21 108.6 156 35.9
AL4G28030 Arabidopsis lyrata HOM05D004255 ORTHO05D004815 2.3e-21 108.2 95 63.2
Prupe.6G234000 Prunus persica HOM05D004255 ORTHO05D004815 2.9e-21 107.8 154 41.6
Atru.chr12.340 Acer truncatum HOM05D004255 ORTHO05D004815 3.8e-21 107.5 172 37.2
Medtr1g045880 Medicago truncatula HOM05D004255 ORTHO05D004815 3.8e-21 107.5 163 40.5
GSVIVG01025719001 Vitis vinifera HOM05D004255 ORTHO05D004815 3.8e-21 107.5 190 33.7
Ah.08g211800 Amaranthus hybridus HOM05D004255 ORTHO05D004815 8.6e-21 106.3 204 35.3
AUR62041993 Chenopodium quinoa HOM05D004255 ORTHO05D004815 8.6e-21 106.3 158 41.8
Nitab4.5_0001297g0100 Nicotiana tabacum HOM05D004255 ORTHO05D004815 1.1e-20 105.9 150 42.0
SalBow3G3143 Salvia bowleyana HOM05D004255 ORTHO05D004815 1.1e-20 105.9 165 38.8
Hund05968 Selenicereus undatus HOM05D004255 ORTHO05D004815 1.5e-20 105.5 204 37.3
SalBow2G0603 Salvia bowleyana HOM05D004255 ORTHO05D004815 2.5e-20 104.8 165 39.4
SalBow2G0953 Salvia bowleyana HOM05D004255 ORTHO05D004815 2.5e-20 104.8 165 39.4
VMungo0720G0391 Vigna mungo HOM05D004255 ORTHO05D004815 2.5e-20 104.8 190 36.8
SGA_v2.0_scaffold75G24836 Striga asiatica HOM05D004255 ORTHO05D004815 7.2e-20 103.2 173 38.2
PGR083G1347 Punica granatum HOM05D004255 ORTHO05D004815 3.6e-19 100.9 205 34.6
arahy.Tifrunner.gnm1.ann1.RBUQ0I Arachis hypogaea HOM05D004255 ORTHO05D004815 8.0e-19 99.8 151 41.7
EL10Ac7g16556 Beta vulgaris HOM05D004255 ORTHO05D004815 1.4e-18 99.0 194 34.5
TWI74G0375 Tripterygium wilfordii HOM05D004255 ORTHO05D004815 1.8e-18 98.6 176 36.9
Duzib170G0445 Durio zibethinus HOM05D004255 ORTHO05D004815 1.3e-16 92.4 200 35.0
Hma1.2p1_0297F.1_g117010 Hydrangea macrophylla HOM05D004255 ORTHO05D004815 1.3e-16 92.4 183 35.5
Nn2g11560 Nelumbo nucifera HOM05D004255 ORTHO05D004815 1.7e-16 92.0 150 40.7
Thecc.09G346900 Theobroma cacao HOM05D004255 ORTHO05D004815 1.7e-16 92.0 208 34.6
Haze_20563 Corylus avellana HOM05D004255 ORTHO05D011583 2.2e-16 91.7 160 38.1
Sc20g0005250 Simmondsia chinensis HOM05D004255 ORTHO05D004815 4.9e-16 90.5 204 32.8
MBI19_g30280_MAGBIO Magnolia biondii HOM05D004255 ORTHO05D004815 1.4e-15 89.0 207 33.8
FAN09G2699 Fragaria x ananassa HOM05D004255 ORTHO05D004815 1.8e-15 88.6 140 37.9
MD04G1094800 Malus domestica HOM05D004255 ORTHO05D004815 4.1e-15 87.4 159 36.5
COL.COLO4_18281 Corchorus olitorius HOM05D004255 ORTHO05D004815 5.4e-15 87.0 192 33.3
Lsat_1_v5_gn_2_106641 Lactuca sativa HOM05D004255 ORTHO05D004815 7.0e-15 86.7 150 38.0
HanXRQChr07g0206501 Helianthus annuus HOM05D004255 ORTHO05D004815 4.6e-14 84.0 201 32.3
Cpa.g.sc65.27 Carica papaya HOM05D004255 ORTHO05D004815 7.8e-14 83.2 163 34.4
Aqoxy1G01172 Aquilegia oxysepala HOM05D004255 ORTHO05D004815 1.7e-13 82.0 170 34.7
Lsat_1_v5_gn_2_99540 Lactuca sativa HOM05D004255 ORTHO05D004815 2.3e-13 81.6 171 27.5
Gorai.009G110100 Gossypium raimondii HOM05D004255 ORTHO05D004815 1.5e-12 79.0 157 36.3
CANSAT54G2410 Cannabis sativa HOM05D004255 ORTHO05D004815 1.9e-12 78.6 162 32.7
PSO063G1866 Papaver somniferum HOM05D004255 ORTHO05D004815 1.9e-12 78.6 146 34.2
AL4G22170 Arabidopsis lyrata HOM05D004255 ORTHO05D004815 2.5e-12 78.2 167 31.1
Gohir.A05G106000 Gossypium hirsutum HOM05D004255 ORTHO05D004815 3.3e-12 77.8 174 34.5
Prupe.6G107000 Prunus persica HOM05D004255 ORTHO05D004815 3.3e-12 77.8 155 35.5
Lj1A198G34 Lonicera japonica HOM05D004255 ORTHO05D004815 7.3e-12 76.6 181 30.9
Oeu034113.1 Olea europaea HOM05D004255 ORTHO05D004815 1.6e-11 75.5 155 31.0
CARHR120730 Cardamine hirsuta HOM05D004255 ORTHO05D004815 3.6e-11 74.3 171 29.8
AT2G28050 Arabidopsis thaliana HOM05D004255 ORTHO05D004815 4.7e-11 73.9 167 29.9
TWI75G0856 Tripterygium wilfordii HOM05D004255 ORTHO05D004815 4.7e-11 73.9 150 31.3
Carub.0004s0880 Capsella rubella HOM05D004255 ORTHO05D004815 6.1e-11 73.6 163 29.4
PSO339G5596 Papaver somniferum HOM05D004255 ORTHO05D004815 6.1e-11 73.6 146 32.9
RcHm_v2.0_Chr5g0057911 Rosa chinensis HOM05D004255 ORTHO05D004815 6.1e-11 73.6 155 34.8
Cfa011366 Carpinus fangiana HOM05D004255 ORTHO05D004815 8.0e-11 73.2 172 30.8
Ca_11878_v3 Cicer arietinum L. HOM05D004255 ORTHO05D004815 8.0e-11 73.2 89 46.1
Duzib168G2269 Durio zibethinus HOM05D004255 ORTHO05D004815 8.0e-11 73.2 159 33.3
RcHm_v2.0_Chr5g0057961 Rosa chinensis HOM05D004255 ORTHO05D004815 8.0e-11 73.2 155 34.8
TAR633G0618 Trochodendron aralioides HOM05D004255 ORTHO05D004815 1.0e-10 72.8 102 41.2
Haze_23917 Corylus avellana HOM05D004255 ORTHO05D004815 1.4e-10 72.4 192 30.7
Glyma.20G081700 Glycine max HOM05D004255 ORTHO05D004815 1.4e-10 72.4 139 35.3
Thhalv10016624m.g Eutrema salsugineum HOM05D004255 ORTHO05D004815 1.8e-10 72.0 157 33.1
RcHm_v2.0_Chr5g0058011 Rosa chinensis HOM05D004255 ORTHO05D004815 4.0e-10 70.9 155 33.5
Sc15g0001630 Simmondsia chinensis HOM05D004255 ORTHO05D004815 4.0e-10 70.9 192 28.6
CiPaw.14G077900 Carya illinoinensis HOM05D004255 ORTHO05D004815 6.8e-10 70.1 214 27.6
QL01p037114 Quercus lobata HOM05D004255 ORTHO05D004815 8.9e-10 69.7 199 30.7
AUR62022768 Chenopodium quinoa HOM05D004255 ORTHO05D004815 1.2e-09 69.3 212 28.3
Rhsim04G0144500 Rhododendron simsii HOM05D004255 ORTHO05D004815 1.2e-09 69.3 98 37.8
Aa31LG5G8100 Aethionema arabicum HOM05D004255 ORTHO05D004815 1.5e-09 68.9 133 31.6
HanXRQChr09g0259341 Helianthus annuus HOM05D004255 ORTHO05D004815 2.6e-09 68.2 175 25.7
MD03G1124300 Malus domestica HOM05D004255 ORTHO05D004815 2.6e-09 68.2 142 33.8
Cc01_g10670 Coffea canephora HOM05D004255 ORTHO05D004815 4.4e-09 67.4 207 29.0
Sed0023037 Sechium edule HOM05D004255 ORTHO05D004815 4.4e-09 67.4 92 39.1
CDE02G3824 Ceratophyllum demersum HOM05D004255 ORTHO05D004815 1.7e-08 65.5 153 29.4
Sopen10g033540 Solanum pennellii HOM05D004255 ORTHO05D004815 2.9e-08 64.7 144 29.2
BcaB02g10133 Brassica carinata HOM05D004255 ORTHO05D004815 4.9e-08 63.9 161 27.3
Sp4g10830 Schrenkiella parvula HOM05D004255 ORTHO05D004815 4.9e-08 63.9 154 27.9
COL.COLO4_30932 Corchorus olitorius HOM05D000090 ORTHO05D004815 1.9e-07 62.0 120 36.7
PGR102G0358 Punica granatum HOM05D004255 ORTHO05D004815 3.2e-07 61.2 166 27.1
Eucgr.K03591 Eucalyptus grandis HOM05D004255 ORTHO05D004815 4.1e-07 60.8 90 35.6
PGSC0003DMG400010458 Solanum tuberosum HOM05D004255 ORTHO05D004815 5.4e-07 60.5 55 49.1
Cc10_g03430 Coffea canephora HOM05D007639 ORTHO05D009509 2.7e-06 58.2 135 28.9
Manes.05G164100 Manihot esculenta HOM05D007639 ORTHO05D009509 2.7e-06 58.2 143 29.4
PSO675G4860 Papaver somniferum HOM05D007639 ORTHO05D009509 2.7e-06 58.2 134 28.4
Ah.01g003110 Amaranthus hybridus HOM05D004255 ORTHO05D004815 3.5e-06 57.8 201 26.4


User provided reference genes

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