Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p21220 Brassica napus HOM05D006617 ORTHO05D008247 2.4e-156 555.4 281 100.0
BolC3t14504H Brassica oleracea HOM05D006617 ORTHO05D008247 2.4e-156 555.4 281 100.0
BcaC01g05904 Brassica carinata HOM05D006617 ORTHO05D008247 5.4e-156 554.3 281 99.6
A03p18190 Brassica napus HOM05D006617 ORTHO05D008247 4.7e-152 541.2 281 96.8
BraA03t11079Z Brassica rapa HOM05D006617 ORTHO05D008247 8.1e-152 540.4 281 96.8
BcaB01g03976 Brassica carinata HOM05D006617 ORTHO05D008247 6.9e-143 510.8 281 91.5
Sp4g14850 Schrenkiella parvula HOM05D006617 ORTHO05D008247 3.5e-131 471.9 282 84.4
Thhalv10017053m.g Eutrema salsugineum HOM05D006617 ORTHO05D008247 5.3e-127 458.0 281 82.6
AL4G27880 Arabidopsis lyrata HOM05D006617 ORTHO05D008247 2.6e-126 455.7 282 84.8
Carub.0004s1384 Capsella rubella HOM05D006617 ORTHO05D008247 2.7e-123 445.7 282 80.9
Aa31LG5G4800 Aethionema arabicum HOM05D006617 ORTHO05D008247 9.1e-103 377.5 264 74.6
THA.LOC104800995 Tarenaya hassleriana HOM05D006617 ORTHO05D008247 3.8e-101 372.1 273 69.2
AT2G32500 Arabidopsis thaliana HOM05D006617 ORTHO05D008247 7.4e-89 331.3 219 80.4
Cpa.g.sc39.21 Carica papaya HOM05D006617 ORTHO05D008247 5.0e-85 318.5 236 65.3
Atru.chr6.3216 Acer truncatum HOM05D006617 ORTHO05D008247 4.2e-84 315.5 259 61.8
QL12p017915 Quercus lobata HOM05D006617 ORTHO05D008247 1.0e-82 310.8 281 56.9
COL.COLO4_11251 Corchorus olitorius HOM05D006617 ORTHO05D008247 5.2e-82 308.5 253 59.7
GSVIVG01019803001 Vitis vinifera HOM05D006617 ORTHO05D008247 2.6e-81 306.2 259 59.1
Manes.12G073000 Manihot esculenta HOM05D006617 ORTHO05D008247 5.7e-81 305.1 240 62.5
Prupe.5G095100 Prunus persica HOM05D006617 ORTHO05D008247 6.3e-80 301.6 281 55.2
RcHm_v2.0_Chr7g0198641 Rosa chinensis HOM05D006617 ORTHO05D008247 6.3e-80 301.6 273 54.9
Actinidia14540 Actinidia chinensis HOM05D006617 ORTHO05D008247 8.2e-80 301.2 260 57.7
FAN04G2914 Fragaria x ananassa HOM05D006617 ORTHO05D008247 1.8e-79 300.1 273 55.3
Ciclev10016122m.g Citrus clementina HOM05D006617 ORTHO05D008247 9.1e-79 297.7 259 57.9
Nn6g33542 Nelumbo nucifera HOM05D006617 ORTHO05D008247 9.1e-79 297.7 261 58.2
arahy.Tifrunner.gnm1.ann1.164QK4 Arachis hypogaea HOM05D006617 ORTHO05D008247 1.2e-78 297.4 248 60.1
arahy.Tifrunner.gnm1.ann1.90PEWX Arachis hypogaea HOM05D006617 ORTHO05D008247 1.2e-78 297.4 248 60.1
Thecc.02G366400 Theobroma cacao HOM05D006617 ORTHO05D008247 1.6e-78 297.0 254 58.3
Potri.014G154900 Populus trichocarpa HOM05D006617 ORTHO05D008247 2.0e-78 296.6 225 65.8
MELO3C016345.2 Cucumis melo HOM05D006617 ORTHO05D008247 3.5e-78 295.8 225 62.2
CiPaw.11G138400 Carya illinoinensis HOM05D006617 ORTHO05D008247 5.9e-78 295.0 278 55.8
CSS0023405 Camellia sinensis var. sinensis HOM05D006617 ORTHO05D008247 7.7e-78 294.7 264 55.7
CsaV3_4G006040 Cucumis sativus L. HOM05D006617 ORTHO05D008247 1.0e-77 294.3 225 62.7
Gohir.D12G177000 Gossypium hirsutum HOM05D006617 ORTHO05D008247 1.7e-77 293.5 263 55.5
Gorai.008G189400 Gossypium raimondii HOM05D006617 ORTHO05D008247 1.7e-77 293.5 263 55.5
Gohir.A12G174300 Gossypium hirsutum HOM05D006617 ORTHO05D008247 2.2e-77 293.1 263 55.5
Dinv38979 Davidia involucrata HOM05D006617 ORTHO05D008247 2.9e-77 292.7 225 62.7
VMungo0251G0775 Vigna mungo HOM05D006617 ORTHO05D008247 2.9e-77 292.7 253 56.5
Phvul.002G287200 Phaseolus vulgaris HOM05D006617 ORTHO05D008247 8.5e-77 291.2 252 56.7
Glyma.05G205300 Glycine max HOM05D006617 ORTHO05D008247 1.1e-76 290.8 252 57.1
ECA233G3703 Erigeron canadensis HOM05D006617 ORTHO05D008247 4.2e-76 288.9 245 57.1
MD06G1077000 Malus domestica HOM05D006617 ORTHO05D008247 4.2e-76 288.9 278 54.7
Psat7g035840 Pisum sativum HOM05D006617 ORTHO05D008247 4.2e-76 288.9 252 56.7
FAN13G2116 Fragaria x ananassa HOM05D006617 ORTHO05D008247 5.5e-76 288.5 266 54.9
Lj4g0017727 Lotus japonicus HOM05D006617 ORTHO05D008247 5.5e-76 288.5 254 57.9
Lalb_Chr05g0224971 Lupinus albus HOM05D006617 ORTHO05D008247 9.4e-76 287.7 249 58.2
Lj8A235T58 Lonicera japonica HOM05D006617 ORTHO05D008247 2.1e-75 286.6 239 57.7
TWI36G1290 Tripterygium wilfordii HOM05D006617 ORTHO05D008247 2.7e-75 286.2 248 58.1
Sc22g0000340 Simmondsia chinensis HOM05D006617 ORTHO05D008247 4.7e-75 285.4 256 57.4
TPR.G12841 Trifolium pratense HOM05D006617 ORTHO05D008247 6.1e-75 285.0 280 52.1
Sed0011813 Sechium edule HOM05D006617 ORTHO05D008247 8.0e-75 284.6 232 60.3
Hma1.2p1_0514F.1_g169800 Hydrangea macrophylla HOM05D006617 ORTHO05D008247 1.0e-74 284.3 251 57.8
Cc08_g14300 Coffea canephora HOM05D006617 ORTHO05D008247 1.4e-74 283.9 225 60.0
Duzib251G0852 Durio zibethinus HOM05D006617 ORTHO05D008247 1.8e-74 283.5 262 54.6
Ca_17553_v3 Cicer arietinum L. HOM05D006617 ORTHO05D008247 2.3e-74 283.1 252 56.7
Glyma.08G012200 Glycine max HOM05D006617 ORTHO05D008247 2.3e-74 283.1 252 55.6
CAN.G26.17 Capsicum annuum HOM05D006617 ORTHO05D008247 4.0e-74 282.3 253 53.4
SalBow6G1063 Salvia bowleyana HOM05D006617 ORTHO05D008247 5.2e-74 282.0 248 56.0
Medtr8g096960 Medicago truncatula HOM05D006617 ORTHO05D008247 1.5e-73 280.4 248 54.4
Lsat_1_v5_gn_6_6941 Lactuca sativa HOM05D006617 ORTHO05D008247 2.0e-73 280.0 236 58.1
Ah.12g057360 Amaranthus hybridus HOM05D006617 ORTHO05D008247 3.4e-73 279.3 243 57.2
Eucgr.D01883 Eucalyptus grandis HOM05D006617 ORTHO05D008247 2.2e-72 276.6 269 55.0
HanXRQChr12g0384501 Helianthus annuus HOM05D006617 ORTHO05D008247 2.8e-72 276.2 243 55.6
EL10Ac5g12764 Beta vulgaris HOM05D006617 ORTHO05D008247 6.3e-72 275.0 229 60.3
Migut.A00797 Erythranthe guttata HOM05D006617 ORTHO05D008247 8.3e-72 274.6 287 49.5
PSO478G3588 Papaver somniferum HOM05D006617 ORTHO05D008247 1.8e-71 273.5 247 55.9
PSO782G1088 Papaver somniferum HOM05D006617 ORTHO05D008247 1.6e-70 270.4 247 55.9
FvH4_5g01880 Fragaria vesca HOM05D006617 ORTHO05D008247 2.0e-70 270.0 244 57.4
Solyc12g056350.2 Solanum lycopersicum HOM05D006617 ORTHO05D008247 2.0e-70 270.0 250 53.6
Sopen12g028920 Solanum pennellii HOM05D006617 ORTHO05D008247 4.5e-70 268.9 250 53.2
DCAR_008412 Daucus carota HOM05D006617 ORTHO05D008247 5.9e-70 268.5 242 55.4
PGSC0003DMG400004251 Solanum tuberosum HOM05D006617 ORTHO05D008247 1.0e-69 267.7 253 52.2
FAN18G0570 Fragaria x ananassa HOM05D006617 ORTHO05D008247 2.9e-69 266.2 244 57.0
FAN08G3651 Fragaria x ananassa HOM05D006617 ORTHO05D008247 1.1e-68 264.2 244 56.6
Os03g0110900 Oryza sativa ssp. japonica HOM05D006617 ORTHO05D008247 3.0e-66 256.1 232 52.6
TAR375G0379 Trochodendron aralioides HOM05D006617 ORTHO05D008247 1.5e-65 253.8 224 58.9
AUR62017243 Chenopodium quinoa HOM05D006617 ORTHO05D008247 2.0e-65 253.4 251 53.4
ATR0680G238 Amborella trichopoda HOM05D006617 ORTHO05D008247 2.6e-65 253.1 225 54.7
Sabra14G0117100 Salix brachista HOM05D006617 ORTHO05D008247 1.3e-64 250.8 207 62.3
AUR62010601 Chenopodium quinoa HOM05D000030 ORTHO05D008247 2.2e-64 250.0 219 58.9
CARHR126330 Cardamine hirsuta HOM05D006617 ORTHO05D008247 8.3e-64 248.1 134 92.5
Zm00001eb404120 Zea mays HOM05D006617 ORTHO05D008247 1.1e-63 247.7 228 53.1
Hund11496 Selenicereus undatus HOM05D006617 ORTHO05D008247 2.9e-61 239.6 215 55.3
PGR031G1807 Punica granatum HOM05D006617 ORTHO05D008247 7.3e-60 235.0 206 59.2
ClCG07G007980 Citrullus lanatus HOM05D006617 ORTHO05D008247 1.4e-58 230.7 175 60.6
HPP92_004974 Vanilla planifolia HOM05D006617 ORTHO05D008247 8.9e-58 228.0 267 44.2
Peaxi162Scf01294g00327 Petunia axillaris HOM05D006617 ORTHO05D008247 1.2e-57 227.6 234 49.6
Haze_08904 Corylus avellana HOM05D006617 ORTHO05D008247 1.5e-57 227.3 212 55.7
Haze_08908 Corylus avellana HOM05D006617 ORTHO05D008247 7.5e-57 224.9 213 54.9
MBI18_g01147_MAGBIO Magnolia biondii HOM05D006617 ORTHO05D008247 7.5e-57 224.9 190 57.4
SEGI_22684 Sequoiadendron giganteum HOM05D006617 ORTHO05D008247 7.8e-54 214.9 221 45.2
Oeu025101.1 Olea europaea HOM05D006617 ORTHO05D008247 3.6e-51 206.1 165 58.8
SGA_v2.0_scaffold146G36248 Striga asiatica HOM05D006617 ORTHO05D008247 1.2e-49 201.1 178 57.3
Actinidia02025 Actinidia chinensis HOM05D006617 ORTHO05D008247 1.9e-47 193.7 182 53.8
Nitab4.5_0010198g0030 Nicotiana tabacum HOM05D006617 ORTHO05D008247 1.1e-42 177.9 257 39.7
Aqoxy7G00382 Aquilegia oxysepala HOM05D006617 ORTHO05D008247 1.1e-39 167.9 133 58.6
Nitab4.5_0000360g0080 Nicotiana tabacum HOM05D006617 ORTHO05D008247 7.1e-39 165.2 181 44.8
AagrBONN_evm.TU.Sc2ySwM_228.4793 Anthoceros agrestis HOM05D006617 ORTHO05D008247 7.8e-38 161.8 223 37.7
SMO329G0076 Selaginella moellendorffii HOM05D006617 ORTHO05D008247 3.9e-37 159.5 223 37.2
Nitab4.5_0029474g0010 Nicotiana tabacum HOM05D006617 ORTHO05D008247 1.1e-36 157.9 142 54.2
Hma1.2p1_3255F.1_g334560 Hydrangea macrophylla HOM05D006617 ORTHO05D008247 4.3e-36 156.0 195 49.2
Pp3c20_8200 Physcomitrium patens HOM05D006617 ORTHO05D008247 4.0e-34 149.4 220 36.8
AUR62042944 Chenopodium quinoa HOM05D006617 ORTHO05D008247 1.4e-26 124.4 137 50.4
MSTRG.12003 Avicennia marina HOM05D006617 ORTHO05D008247 4.4e-25 119.4 91 59.3
Aqoxy7G00383 Aquilegia oxysepala HOM05D006617 ORTHO05D008247 1.7e-24 117.5 112 55.4
Mapoly0086s0010 Marchantia polymorpha HOM05D006617 ORTHO05D008247 4.9e-24 115.9 235 34.5
Pp3c7_1410 Physcomitrium patens HOM05D006617 ORTHO05D008247 4.9e-24 115.9 195 33.8
Mapoly0086s0005 Marchantia polymorpha HOM05D006617 ORTHO05D008247 6.2e-19 99.0 228 27.6
PRCOL_00003136 Prasinoderma coloniale HOM05D006617 ORTHO05D008247 9.0e-18 95.1 204 30.4
Glyma.05G087800 Glycine max HOM05D006617 ORTHO05D008247 1.7e-16 90.9 74 54.1
Lsat_1_v5_gn_8_1081 Lactuca sativa HOM05D006617 ORTHO05D008247 4.9e-16 89.4 98 51.0
Carub.0004s3068 Capsella rubella HOM05D006617 ORTHO05D008247 7.1e-15 85.5 48 91.7
Pp3c8_19270 Physcomitrium patens HOM05D006617 ORTHO05D008247 9.3e-15 85.1 228 27.2
CBR_g57728 Chara braunii HOM05D006617 ORTHO05D008247 1.5e-12 77.8 115 40.0
SMO307G0050 Selaginella moellendorffii HOM05D037974 ORTHO05D008247 1.1e-07 61.6 218 27.1
CDE06G1437 Ceratophyllum demersum HOM05D006617 ORTHO05D008247 1.4e-07 61.2 61 57.4
Aa31sc437G20 Aethionema arabicum HOM05D003252 ORTHO05D003640 1.9e-07 60.8 223 26.0
Aa31sc893G10 Aethionema arabicum HOM05D003252 ORTHO05D003640 2.4e-07 60.5 224 25.9
Gohir.A07G014600 Gossypium hirsutum HOM05D003252 ORTHO05D003640 5.5e-07 59.3 232 23.7
Gorai.001G015100 Gossypium raimondii HOM05D003252 ORTHO05D003640 5.5e-07 59.3 230 24.3
Ciclev10012522m.g Citrus clementina HOM05D003252 ORTHO05D003640 9.3e-07 58.5 226 24.3
Aqoxy7G04115 Aquilegia oxysepala HOM05D003252 ORTHO05D003640 6.0e-06 55.8 135 27.4


User provided reference genes

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