Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g05908 Brassica carinata HOM05D011011 ORTHO05D009872 1.0e-61 240.4 167 100.0
C03p21180 Brassica napus HOM05D011011 ORTHO05D009872 1.0e-61 240.4 167 100.0
BolC3t14501H Brassica oleracea HOM05D011011 ORTHO05D009872 3.1e-58 228.8 167 94.6
A03p18150 Brassica napus HOM05D011011 ORTHO05D009872 7.6e-57 224.2 167 82.6
BraA03t11075Z Brassica rapa HOM05D011011 ORTHO05D009872 7.6e-57 224.2 167 82.6
BcaB01g03982 Brassica carinata HOM05D011011 ORTHO05D009872 5.5e-55 218.0 157 96.2
BcaB01g03981 Brassica carinata HOM05D011011 ORTHO05D009872 7.1e-47 191.0 174 82.2
Sp4g14730 Schrenkiella parvula HOM05D011011 ORTHO05D009872 3.4e-41 172.2 175 78.9
BcaB06g28588 Brassica carinata HOM05D011011 ORTHO05D009872 5.1e-37 158.3 113 75.2
BolC4t27657H Brassica oleracea HOM05D011011 ORTHO05D009872 2.6e-33 146.0 115 72.2
BcaC02g07938 Brassica carinata HOM05D011011 ORTHO05D009872 7.7e-33 144.4 115 71.3
C04p61740 Brassica napus HOM05D011011 ORTHO05D009872 2.2e-32 142.9 115 70.4
AT2G32360 Arabidopsis thaliana HOM05D011011 ORTHO05D009872 6.5e-32 141.4 111 69.4
AL4G27740 Arabidopsis lyrata HOM05D011011 ORTHO05D009872 1.5e-25 120.2 85 75.3
AL125U10020 Arabidopsis lyrata HOM05D011011 ORTHO05D009872 7.7e-25 117.9 85 74.1
Carub.0004s1371 Capsella rubella HOM05D011011 ORTHO05D009872 2.2e-24 116.3 113 62.8
CARHR126180 Cardamine hirsuta HOM05D011011 ORTHO05D009872 6.1e-22 108.2 85 70.6
THA.LOC104816105 Tarenaya hassleriana HOM05D011011 ORTHO05D009872 3.9e-21 105.5 112 54.5
Eucgr.A01721 Eucalyptus grandis HOM05D008139 ORTHO05D009872 9.1e-10 67.8 83 45.8
COL.COLO4_15724 Corchorus olitorius HOM05D008139 ORTHO05D009872 1.6e-09 67.0 82 43.9
Atru.chr6.3155 Acer truncatum HOM05D008139 ORTHO05D009872 1.7e-08 63.5 80 40.0
Lalb_Chr03g0028851 Lupinus albus HOM05D008139 ORTHO05D009872 2.2e-08 63.2 79 43.0
Ciclev10017826m.g Citrus clementina HOM05D008139 ORTHO05D009872 5.0e-08 62.0 83 43.4
RcHm_v2.0_Chr2g0126901 Rosa chinensis HOM05D008139 ORTHO05D009872 5.0e-08 62.0 83 41.0
Sabra17G0024400 Salix brachista HOM05D008139 ORTHO05D009872 5.0e-08 62.0 114 40.4
Thecc.04G120400 Theobroma cacao HOM05D008139 ORTHO05D009872 5.0e-08 62.0 81 42.0
Atru.chr6.3157 Acer truncatum HOM05D008139 ORTHO05D009872 6.5e-08 61.6 80 40.0
FAN02G4280 Fragaria x ananassa HOM05D008139 ORTHO05D009872 6.5e-08 61.6 83 39.8
PGR083G1842 Punica granatum HOM05D008139 ORTHO05D009872 8.5e-08 61.2 95 40.0
MD07G1098300 Malus domestica HOM05D008139 ORTHO05D009872 1.1e-07 60.8 86 40.7
Prupe.3G131300 Prunus persica HOM05D008139 ORTHO05D009872 1.1e-07 60.8 80 42.5
Lj3g0004995 Lotus japonicus HOM05D008139 ORTHO05D009872 1.5e-07 60.5 83 42.2
Manes.13G103000 Manihot esculenta HOM05D008139 ORTHO05D009872 2.5e-07 59.7 79 41.8
Gohir.A11G161900 Gossypium hirsutum HOM05D008139 ORTHO05D009872 3.2e-07 59.3 79 38.0
Gohir.D11G168166 Gossypium hirsutum HOM05D008139 ORTHO05D009872 3.2e-07 59.3 79 38.0
Gorai.007G179600 Gossypium raimondii HOM05D008139 ORTHO05D009872 3.2e-07 59.3 79 38.0
Potri.017G037500 Populus trichocarpa HOM05D008139 ORTHO05D009872 4.2e-07 58.9 79 39.2
TPR.G19049 Trifolium pratense HOM05D008139 ORTHO05D009872 5.5e-07 58.5 83 41.0
Glyma.12G100900 Glycine max HOM05D008139 ORTHO05D009872 9.4e-07 57.8 88 40.9
Phvul.011G105800 Phaseolus vulgaris HOM05D008139 ORTHO05D009872 9.4e-07 57.8 79 38.0
PGSC0003DMG400045933 Solanum tuberosum HOM05D008139 ORTHO05D009872 9.4e-07 57.8 83 36.1
Hma1.2p1_0249F.1_g102430 Hydrangea macrophylla HOM05D008139 ORTHO05D009872 2.1e-06 56.6 83 38.6
Medtr4g046720 Medicago truncatula HOM05D008139 ORTHO05D009872 2.1e-06 56.6 83 37.3
Prupe.2G122300 Prunus persica HOM05D008139 ORTHO05D009872 2.1e-06 56.6 81 38.3
Potri.007G122500 Populus trichocarpa HOM05D008139 ORTHO05D009872 3.6e-06 55.8 83 38.6
SGA_v2.0_scaffold48G18067 Striga asiatica HOM05D008139 ORTHO05D009872 3.6e-06 55.8 85 35.3
CAN.G1139.6 Capsicum annuum HOM05D008139 ORTHO05D009872 6.1e-06 55.1 113 31.9
Sed0019249 Sechium edule HOM05D008139 ORTHO05D009872 6.1e-06 55.1 79 36.7


User provided reference genes

Program Settings