Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g05952 Brassica carinata HOM05D006537 ORTHO05D008186 6.2e-135 484.2 252 100.0
C03p20710 Brassica napus HOM05D006537 ORTHO05D008186 6.2e-135 484.2 252 100.0
BolC3t14452H Brassica oleracea HOM05D006537 ORTHO05D008186 6.2e-135 484.2 252 100.0
BraA03t11027Z Brassica rapa HOM05D006537 ORTHO05D008186 6.8e-134 480.7 252 98.8
A03p17600 Brassica napus HOM05D006537 ORTHO05D008186 8.9e-134 480.3 252 98.8
BcaB01g04045 Brassica carinata HOM05D006537 ORTHO05D008186 3.2e-131 471.9 252 98.0
Sp4g13920 Schrenkiella parvula HOM05D006537 ORTHO05D008186 1.1e-128 463.4 252 94.8
AL4G26710 Arabidopsis lyrata HOM05D006537 ORTHO05D008186 2.1e-127 459.1 249 93.2
AT2G31440 Arabidopsis thaliana HOM05D006537 ORTHO05D008186 2.1e-127 459.1 249 93.2
Carub.0004s1277 Capsella rubella HOM05D006537 ORTHO05D008186 3.1e-126 455.3 249 92.4
Thhalv10017140m.g Eutrema salsugineum HOM05D006537 ORTHO05D008186 2.6e-125 452.2 246 95.5
CARHR125090 Cardamine hirsuta HOM05D006537 ORTHO05D008186 6.4e-124 447.6 252 91.3
TWI63G0033 Tripterygium wilfordii HOM05D006537 ORTHO05D008186 2.5e-112 409.1 249 79.1
MD04G1039500 Malus domestica HOM05D006537 ORTHO05D008186 5.6e-112 407.9 248 78.6
Thecc.04G185300 Theobroma cacao HOM05D006537 ORTHO05D008186 8.1e-111 404.1 248 78.6
Prupe.1G190300 Prunus persica HOM05D006537 ORTHO05D008186 1.1e-110 403.7 248 77.8
Aa31LG5G5440 Aethionema arabicum HOM05D006537 ORTHO05D008186 1.8e-110 402.9 246 85.0
Dinv22722 Davidia involucrata HOM05D006537 ORTHO05D008186 2.4e-110 402.5 249 77.9
Haze_01534 Corylus avellana HOM05D006537 ORTHO05D008186 3.1e-110 402.1 248 78.6
Duzib212G0958 Durio zibethinus HOM05D006537 ORTHO05D008186 4.0e-110 401.7 248 77.8
FvH4_4g11160 Fragaria vesca HOM05D006537 ORTHO05D008186 1.5e-109 399.8 245 79.6
CiPaw.01G101300 Carya illinoinensis HOM05D006537 ORTHO05D008186 2.6e-109 399.1 248 79.0
Gohir.A02G015200 Gossypium hirsutum HOM05D006537 ORTHO05D008186 3.4e-109 398.7 248 76.6
Gohir.D02G016700 Gossypium hirsutum HOM05D006537 ORTHO05D008186 4.4e-109 398.3 248 77.0
CSS0005792 Camellia sinensis var. sinensis HOM05D006537 ORTHO05D008186 1.3e-108 396.7 245 78.4
Ciclev10021930m.g Citrus clementina HOM05D006537 ORTHO05D008186 2.2e-108 396.0 242 80.2
QL10p048350 Quercus lobata HOM05D006537 ORTHO05D008186 2.2e-108 396.0 249 75.5
Solyc06g073410.3 Solanum lycopersicum HOM05D006537 ORTHO05D008186 2.9e-108 395.6 248 77.4
Sopen06g029790 Solanum pennellii HOM05D006537 ORTHO05D008186 2.9e-108 395.6 248 77.4
Gorai.005G020200 Gossypium raimondii HOM05D006537 ORTHO05D008186 4.9e-108 394.8 248 76.2
GSVIVG01010746001 Vitis vinifera HOM05D006537 ORTHO05D008186 4.9e-108 394.8 249 75.5
Potri.007G127400 Populus trichocarpa HOM05D006537 ORTHO05D008186 6.4e-108 394.4 243 79.4
Duzib268G1074 Durio zibethinus HOM05D006537 ORTHO05D008186 8.4e-108 394.0 248 76.6
ClCG08G004470 Citrullus lanatus HOM05D006537 ORTHO05D008186 1.4e-107 393.3 248 76.6
MELO3C011641.2 Cucumis melo HOM05D006537 ORTHO05D008186 2.4e-107 392.5 248 76.6
PGSC0003DMG400027008 Solanum tuberosum HOM05D006537 ORTHO05D008186 3.2e-107 392.1 248 76.2
Atru.chr3.1537 Acer truncatum HOM05D006537 ORTHO05D008186 7.1e-107 391.0 247 77.3
AUR62015408 Chenopodium quinoa HOM05D006537 ORTHO05D008186 4.6e-106 388.3 252 75.0
Nitab4.5_0004579g0020 Nicotiana tabacum HOM05D006537 ORTHO05D008186 1.0e-105 387.1 245 75.9
CsaV3_6G003840 Cucumis sativus L. HOM05D006537 ORTHO05D008186 2.3e-105 386.0 244 77.0
Eucgr.A00074 Eucalyptus grandis HOM05D006537 ORTHO05D008186 2.3e-105 386.0 242 76.9
TAR633G2589 Trochodendron aralioides HOM05D006537 ORTHO05D008186 5.1e-105 384.8 249 75.1
Eucgr.A00271 Eucalyptus grandis HOM05D006537 ORTHO05D008186 6.6e-105 384.4 242 76.9
Sed0000584 Sechium edule HOM05D006537 ORTHO05D008186 6.6e-105 384.4 252 75.8
Cc00_g09850 Coffea canephora HOM05D006537 ORTHO05D008186 1.1e-104 383.6 249 75.5
Peaxi162Scf00375g00618 Petunia axillaris HOM05D006537 ORTHO05D008186 1.1e-104 383.6 248 74.2
Ca_20779_v3 Cicer arietinum L. HOM05D006537 ORTHO05D008186 4.3e-104 381.7 247 73.7
arahy.Tifrunner.gnm1.ann1.RQ8JR0 Arachis hypogaea HOM05D006537 ORTHO05D008186 7.3e-104 380.9 240 75.8
arahy.Tifrunner.gnm1.ann1.W0CVEC Arachis hypogaea HOM05D006537 ORTHO05D008186 7.3e-104 380.9 240 75.8
Aqoxy2G04100 Aquilegia oxysepala HOM05D006537 ORTHO05D008186 1.3e-103 380.2 249 73.1
THA.LOC104826193 Tarenaya hassleriana HOM05D006537 ORTHO05D008186 1.6e-103 379.8 245 79.2
A10p04320 Brassica napus HOM05D006537 ORTHO05D008186 2.8e-103 379.0 201 94.5
CANSAT78G1337 Cannabis sativa HOM05D006537 ORTHO05D008186 6.2e-103 377.9 245 75.9
Oeu011639.1 Olea europaea HOM05D006537 ORTHO05D008186 6.2e-103 377.9 249 74.7
Lj3g0010197 Lotus japonicus HOM05D006537 ORTHO05D008186 8.1e-103 377.5 242 73.6
PSO732G0008 Papaver somniferum HOM05D006537 ORTHO05D008186 1.1e-102 377.1 246 74.4
Actinidia35970 Actinidia chinensis HOM05D006537 ORTHO05D008186 1.4e-102 376.7 245 74.7
Medtr4g067050 Medicago truncatula HOM05D006537 ORTHO05D008186 1.8e-102 376.3 242 74.8
Psat7g214000 Pisum sativum HOM05D006537 ORTHO05D008186 1.8e-102 376.3 242 74.0
Glyma.12G053200 Glycine max HOM05D006537 ORTHO05D008186 2.4e-102 375.9 242 75.2
VMungo1127G2200 Vigna mungo HOM05D006537 ORTHO05D008186 4.0e-102 375.2 247 73.7
PSO675G9308 Papaver somniferum HOM05D006537 ORTHO05D008186 6.9e-102 374.4 245 73.9
TPR.G34202 Trifolium pratense HOM05D006537 ORTHO05D008186 9.0e-102 374.0 242 73.6
Rhsim09G0028500 Rhododendron simsii HOM05D006537 ORTHO05D008186 1.5e-101 373.2 257 71.6
Lalb_Chr01g0003221 Lupinus albus HOM05D006537 ORTHO05D008186 3.4e-101 372.1 243 75.3
EL10Ac3g05587 Beta vulgaris HOM05D006537 ORTHO05D008186 4.5e-101 371.7 273 69.6
Phvul.011G055200 Phaseolus vulgaris HOM05D006537 ORTHO05D008186 4.5e-101 371.7 247 72.9
Glyma.11G128700 Glycine max HOM05D006537 ORTHO05D008186 5.8e-101 371.3 242 74.8
HanXRQChr14g0433111 Helianthus annuus HOM05D006537 ORTHO05D008186 9.9e-101 370.5 243 72.8
SGA_v2.0_scaffold74G24571 Striga asiatica HOM05D006537 ORTHO05D008186 1.3e-100 370.2 247 71.3
RcHm_v2.0_Chr4g0407291 Rosa chinensis HOM05D006537 ORTHO05D008186 1.7e-100 369.8 245 75.1
Migut.C00288 Erythranthe guttata HOM05D006537 ORTHO05D008186 8.4e-100 367.5 247 72.9
unitig_747.g21541 Utricularia gibba HOM05D006537 ORTHO05D008186 8.4e-100 367.5 239 73.6
Actinidia34608 Actinidia chinensis HOM05D006537 ORTHO05D008186 4.2e-99 365.2 245 73.1
CDE04G1858 Ceratophyllum demersum HOM05D006537 ORTHO05D008186 1.3e-95 353.6 244 68.4
ECA238G3138 Erigeron canadensis HOM05D000961 ORTHO05D000001 1.3e-95 353.6 234 73.5
Lsat_1_v5_gn_2_34721 Lactuca sativa HOM05D006537 ORTHO05D008186 2.4e-94 349.4 243 70.4
CAN.G65.183 Capsicum annuum HOM05D006537 ORTHO05D008186 1.3e-92 343.6 248 68.5
Nn1g09574 Nelumbo nucifera HOM05D006537 ORTHO05D008186 3.8e-92 342.0 245 69.0
Manes.04G042325 Manihot esculenta HOM05D006537 ORTHO05D008186 1.1e-91 340.5 203 83.3
COL.COLO4_24411 Corchorus olitorius HOM05D006537 ORTHO05D008186 3.2e-91 339.0 203 81.8
SEGI_14947 Sequoiadendron giganteum HOM05D006537 ORTHO05D008186 1.6e-90 336.7 239 68.6
Zm00001eb237480 Zea mays HOM05D006537 ORTHO05D008186 1.0e-89 334.0 245 66.5
Nitab4.5_0003132g0110 Nicotiana tabacum HOM05D006537 ORTHO05D008186 8.7e-89 330.9 217 75.1
ATR0686G132 Amborella trichopoda HOM05D006537 ORTHO05D008186 1.6e-87 326.6 245 65.7
HPP92_005584 Vanilla planifolia HOM05D006537 ORTHO05D008186 1.6e-87 326.6 242 66.1
HPP92_005589 Vanilla planifolia HOM05D006537 ORTHO05D008186 2.1e-87 326.2 242 66.1
vmacro22675 Vaccinium macrocarpon HOM05D006537 ORTHO05D008186 2.8e-87 325.9 203 76.8
Sc25g0002980 Simmondsia chinensis HOM05D006537 ORTHO05D008186 6.2e-87 324.7 245 66.9
Sabra07G0103400 Salix brachista HOM05D006537 ORTHO05D008186 8.2e-87 324.3 213 76.1
Os02g0272600 Oryza sativa ssp. japonica HOM05D006537 ORTHO05D008186 1.2e-85 320.5 249 63.5
AUR62002287 Chenopodium quinoa HOM05D006537 ORTHO05D008186 2.9e-84 315.8 205 71.7
Dinv44198 Davidia involucrata HOM05D006537 ORTHO05D008186 4.2e-83 312.0 184 83.2
Cpa.g.sc409.1 Carica papaya HOM05D006537 ORTHO05D008186 7.4e-80 301.2 202 74.3
PGR083G1737 Punica granatum HOM05D006537 ORTHO05D008186 2.4e-78 296.2 249 60.2
BraA10t42709Z Brassica rapa HOM05D006537 ORTHO05D008186 1.5e-77 293.5 162 93.8
Lj6A56G22 Lonicera japonica HOM05D006537 ORTHO05D008186 1.2e-74 283.9 249 61.0
MSTRG.24999 Avicennia marina HOM05D006537 ORTHO05D008186 2.3e-73 279.6 245 60.4
Hund03149 Selenicereus undatus HOM05D006537 ORTHO05D008186 6.7e-73 278.1 257 60.7
AagrBONN_evm.TU.Sc2ySwM_344.2170 Anthoceros agrestis HOM05D006537 ORTHO05D008186 9.7e-72 274.2 238 57.6
Mapoly0042s0024 Marchantia polymorpha HOM05D006537 ORTHO05D008186 3.6e-66 255.8 251 51.8
SMO174G0097 Selaginella moellendorffii HOM05D006537 ORTHO05D008186 6.3e-63 245.0 238 55.0
Pp3c14_4280 Physcomitrium patens HOM05D006537 ORTHO05D008186 4.1e-62 242.3 244 50.4
FAN07G2858 Fragaria x ananassa HOM05D006537 ORTHO05D008186 1.6e-58 230.3 202 62.9
Pp3c10_5780 Physcomitrium patens HOM05D006537 ORTHO05D008186 2.7e-58 229.6 237 46.4
SHI21233 Sapria himalayana HOM05D006537 ORTHO05D008186 9.4e-51 204.5 161 60.9
PSO675G6606 Papaver somniferum HOM05D006537 ORTHO05D008186 4.4e-48 195.7 152 62.5
PSO675G1145 Papaver somniferum HOM05D006537 ORTHO05D008186 7.5e-48 194.9 159 61.6
PSO229G0026 Papaver somniferum HOM05D006537 ORTHO05D008186 3.7e-47 192.6 152 61.8
PSO832G3398 Papaver somniferum HOM05D006537 ORTHO05D008186 2.4e-46 189.9 117 77.8
SalBow7G4202 Salvia bowleyana HOM05D006537 ORTHO05D008186 7.0e-46 188.3 115 73.9
PSO017G0422 Papaver somniferum HOM05D006537 ORTHO05D008186 1.2e-45 187.6 116 77.6
A10p04420 Brassica napus HOM05D006537 ORTHO05D008186 1.6e-45 187.2 100 97.0
BraA10t42699Z Brassica rapa HOM05D006537 ORTHO05D008186 1.3e-36 157.5 94 87.2
DCAR_022903 Daucus carota HOM05D006537 ORTHO05D008186 6.6e-36 155.2 119 65.5
Cre13.g576300 Chlamydomonas reinhardtii HOM05D006537 ORTHO05D008186 1.9e-35 153.7 231 40.3
Lj6P622T45 Lonicera japonica HOM05D006537 ORTHO05D008186 2.8e-31 139.8 91 72.5
CBR_g29804 Chara braunii HOM05D006537 ORTHO05D008186 6.8e-17 92.0 70 62.9
vmacro00700 Vaccinium macrocarpon HOM05D006537 ORTHO05D008186 3.4e-16 89.7 167 38.3
Sopen06g005930 Solanum pennellii HOM05D006537 ORTHO05D008186 7.6e-08 62.0 38 86.8
Cpa.g.c46401 Carica papaya HOM05D006537 ORTHO05D008186 2.2e-07 60.5 42 57.1


User provided reference genes

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