Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p19180 Brassica napus HOM05D004971 ORTHO05D006289 5.7e-172 607.4 300 100.0
BcaC01g06098 Brassica carinata HOM05D004971 ORTHO05D006289 2.3e-152 542.3 303 90.4
BolC3t14306H Brassica oleracea HOM05D004971 ORTHO05D006289 2.3e-152 542.3 303 90.4
BraA03t10920Z Brassica rapa HOM05D004971 ORTHO05D006289 5.4e-138 494.6 307 82.4
A03p16290 Brassica napus HOM05D004971 ORTHO05D006289 1.1e-133 480.3 308 81.8
BcaC01g06076 Brassica carinata HOM05D004971 ORTHO05D006289 3.3e-127 458.8 310 78.7
BcaC03g14623 Brassica carinata HOM05D004971 ORTHO05D006289 4.8e-126 454.9 262 85.5
BolC2t08195H Brassica oleracea HOM05D004971 ORTHO05D006289 4.8e-126 454.9 262 85.5
Sp6g13340 Schrenkiella parvula HOM05D004971 ORTHO05D006289 1.1e-125 453.8 264 85.2
CARHR256940 Cardamine hirsuta HOM05D004971 ORTHO05D006289 3.1e-125 452.2 264 84.1
C02p20580 Brassica napus HOM05D004971 ORTHO05D006289 5.3e-125 451.4 262 85.1
BraA02t06311Z Brassica rapa HOM05D004971 ORTHO05D006289 1.5e-124 449.9 264 83.7
A02p12480 Brassica napus HOM05D004971 ORTHO05D006289 2.0e-124 449.5 263 84.0
AL8G25390 Arabidopsis lyrata HOM05D004971 ORTHO05D006289 3.4e-124 448.7 315 74.9
AT5G51130 Arabidopsis thaliana HOM05D004971 ORTHO05D006289 1.3e-120 436.8 320 71.9
Carub.0008s1117 Capsella rubella HOM05D004971 ORTHO05D006289 1.3e-120 436.8 270 81.5
BcaB05g24018 Brassica carinata HOM05D004971 ORTHO05D006289 5.1e-120 434.9 260 82.3
Thhalv10014188m.g Eutrema salsugineum HOM05D004971 ORTHO05D006289 4.0e-117 425.2 260 80.4
THA.LOC104811095 Tarenaya hassleriana HOM05D004971 ORTHO05D006289 6.9e-109 397.9 313 67.1
Aa31LG3G7640 Aethionema arabicum HOM05D004971 ORTHO05D006289 7.2e-106 387.9 315 64.8
Prupe.7G224700 Prunus persica HOM05D004971 ORTHO05D006289 1.5e-92 343.6 292 57.9
Phvul.002G310900 Phaseolus vulgaris HOM05D004971 ORTHO05D006289 8.5e-91 337.8 297 59.3
CiPaw.03G227700 Carya illinoinensis HOM05D004971 ORTHO05D006289 1.1e-90 337.4 268 62.7
CANSAT56G2306 Cannabis sativa HOM05D004971 ORTHO05D006289 7.2e-90 334.7 308 55.8
Lalb_Chr05g0223101 Lupinus albus HOM05D004971 ORTHO05D006289 1.6e-89 333.6 270 60.4
Potri.018G084700 Populus trichocarpa HOM05D004971 ORTHO05D006289 1.6e-89 333.6 289 57.8
Eucgr.C03795 Eucalyptus grandis HOM05D004971 ORTHO05D006289 1.0e-88 330.9 281 59.1
CANSAT56G1645 Cannabis sativa HOM05D004971 ORTHO05D006289 1.4e-88 330.5 295 55.9
Sabra18G0073100 Salix brachista HOM05D004971 ORTHO05D006289 1.8e-88 330.1 259 62.2
Thecc.09G104800 Theobroma cacao HOM05D004971 ORTHO05D006289 8.8e-88 327.8 281 58.4
Atru.chr7.1418 Acer truncatum HOM05D004971 ORTHO05D006289 1.5e-87 327.0 296 56.4
Glyma.08G035500 Glycine max HOM05D004971 ORTHO05D006289 1.5e-87 327.0 282 58.9
MD15G1192600 Malus domestica HOM05D004971 ORTHO05D006289 1.5e-87 327.0 270 58.9
QL01p004043 Quercus lobata HOM05D004971 ORTHO05D006289 2.0e-87 326.6 274 60.6
PGR102G0147 Punica granatum HOM05D004971 ORTHO05D006289 1.3e-86 323.9 254 62.2
VMungo0251G3379 Vigna mungo HOM05D004971 ORTHO05D006289 2.2e-86 323.2 282 56.7
RcHm_v2.0_Chr2g0091361 Rosa chinensis HOM05D004971 ORTHO05D006289 2.4e-85 319.7 297 54.9
GSVIVG01015340001 Vitis vinifera HOM05D004971 ORTHO05D006289 7.0e-85 318.2 286 56.3
CSS0031404 Camellia sinensis var. sinensis HOM05D004971 ORTHO05D006289 3.5e-84 315.8 283 57.2
Medtr8g102950 Medicago truncatula HOM05D004971 ORTHO05D006289 4.5e-84 315.5 299 55.2
AUR62021639 Chenopodium quinoa HOM05D004971 ORTHO05D006289 1.3e-83 313.9 291 56.0
Lj4g0001585 Lotus japonicus HOM05D004971 ORTHO05D006289 1.3e-83 313.9 261 59.0
Nitab4.5_0000066g0130 Nicotiana tabacum HOM05D004971 ORTHO05D006289 3.2e-82 309.3 275 57.1
TPR.G23453 Trifolium pratense HOM05D004971 ORTHO05D006289 3.2e-82 309.3 297 55.9
Solyc05g050000.3 Solanum lycopersicum HOM05D004971 ORTHO05D006289 4.2e-82 308.9 294 55.1
Dinv41645 Davidia involucrata HOM05D004971 ORTHO05D006289 7.2e-82 308.1 267 58.4
FAN26G3039 Fragaria x ananassa HOM05D001382 ORTHO05D001266 7.2e-82 308.1 262 56.9
arahy.Tifrunner.gnm1.ann1.050WC1 Arachis hypogaea HOM05D004971 ORTHO05D006289 9.4e-82 307.8 291 52.6
FvH4_1g05710 Fragaria vesca HOM05D004971 ORTHO05D006289 1.6e-81 307.0 263 58.2
FAN19G1252 Fragaria x ananassa HOM05D001382 ORTHO05D001266 2.1e-81 306.6 260 57.7
Lsat_1_v5_gn_7_41360 Lactuca sativa HOM05D004971 ORTHO05D006289 2.1e-81 306.6 282 55.0
Hund26242 Selenicereus undatus HOM05D004971 ORTHO05D006289 2.1e-81 306.6 288 54.5
Nn3g18146 Nelumbo nucifera HOM05D004971 ORTHO05D006289 2.7e-81 306.2 284 54.2
Sopen05g028390 Solanum pennellii HOM05D004971 ORTHO05D006289 3.6e-81 305.8 266 57.5
TWI12G1172 Tripterygium wilfordii HOM05D004971 ORTHO05D006289 3.6e-81 305.8 264 57.6
COL.COLO4_34800 Corchorus olitorius HOM05D004971 ORTHO05D006289 4.7e-81 305.4 244 60.7
MSTRG.19566 Avicennia marina HOM05D004971 ORTHO05D006289 6.1e-81 305.1 315 52.7
Migut.J01131 Erythranthe guttata HOM05D004971 ORTHO05D006289 1.8e-80 303.5 260 58.5
FAN28G1806 Fragaria x ananassa HOM05D001382 ORTHO05D006289 1.8e-80 303.5 262 56.5
Rhsim03G0239000 Rhododendron simsii HOM05D004971 ORTHO05D006289 2.3e-80 303.1 259 58.3
Gorai.001G007500 Gossypium raimondii HOM05D004971 ORTHO05D006289 3.0e-80 302.8 312 50.6
FAN23G0317 Fragaria x ananassa HOM05D001382 ORTHO05D006289 4.0e-80 302.4 262 56.1
Gohir.D07G007800 Gossypium hirsutum HOM05D004971 ORTHO05D006289 5.2e-80 302.0 312 50.6
HanXRQChr09g0239411 Helianthus annuus HOM05D004971 ORTHO05D006289 2.0e-79 300.1 287 52.6
Nitab4.5_0003331g0010 Nicotiana tabacum HOM05D004971 ORTHO05D006289 2.6e-79 299.7 290 53.1
Gohir.A07G004400 Gossypium hirsutum HOM05D004971 ORTHO05D006289 3.3e-79 299.3 322 50.3
Peaxi162Scf00539g00614 Petunia axillaris HOM05D004971 ORTHO05D006289 5.7e-79 298.5 275 55.6
Cc06_g10130 Coffea canephora HOM05D004971 ORTHO05D006289 7.5e-79 298.1 255 58.8
ECA240G1764 Erigeron canadensis HOM05D004971 ORTHO05D006289 7.5e-79 298.1 294 52.0
ClCG06G008900 Citrullus lanatus HOM05D004971 ORTHO05D006289 1.7e-78 297.0 270 56.7
Psat7g014440 Pisum sativum HOM05D004971 ORTHO05D006289 1.7e-78 297.0 269 55.4
Aqoxy7G01513 Aquilegia oxysepala HOM05D004971 ORTHO05D006289 2.8e-78 296.2 275 54.2
TAR636G2606 Trochodendron aralioides HOM05D004971 ORTHO05D006289 4.8e-78 295.4 273 54.2
Oeu000366.2 Olea europaea HOM05D004971 ORTHO05D006289 6.3e-78 295.0 313 49.8
Os08g0540500 Oryza sativa ssp. japonica HOM05D004971 ORTHO05D006289 8.2e-78 294.7 254 55.1
SGA_v2.0_scaffold22G09903 Striga asiatica HOM05D004971 ORTHO05D006289 8.2e-78 294.7 291 52.6
SGA_v2.0_scaffold20G09148 Striga asiatica HOM05D004971 ORTHO05D006289 1.8e-77 293.5 308 50.3
arahy.Tifrunner.gnm1.ann1.R8N6MQ Arachis hypogaea HOM05D004971 ORTHO05D006289 1.2e-76 290.8 291 51.2
PSO541G6366 Papaver somniferum HOM05D004971 ORTHO05D006289 1.6e-76 290.4 277 52.0
TAR626G1908 Trochodendron aralioides HOM05D001382 ORTHO05D006289 1.6e-76 290.4 303 51.5
CAN.G399.3 Capsicum annuum HOM05D004971 ORTHO05D006289 2.0e-76 290.0 241 58.1
PSO675G4950 Papaver somniferum HOM05D004971 ORTHO05D006289 7.7e-76 288.1 277 52.0
SHI02711 Sapria himalayana HOM05D004971 ORTHO05D006289 8.5e-75 284.6 270 55.2
Sc08g0007770 Simmondsia chinensis HOM05D004971 ORTHO05D006289 1.5e-74 283.9 284 53.2
Ciclev10009268m.g Citrus clementina HOM05D004971 ORTHO05D006289 9.4e-74 281.2 271 52.8
PGSC0003DMG400021659 Solanum tuberosum HOM05D004971 ORTHO05D006289 1.2e-73 280.8 252 56.3
Thhalv10006518m.g Eutrema salsugineum HOM05D004971 ORTHO05D006289 2.7e-73 279.6 213 66.7
Thhalv10027230m.g Eutrema salsugineum HOM05D004971 ORTHO05D006289 2.7e-73 279.6 213 66.7
AUR62008451 Chenopodium quinoa HOM05D004971 ORTHO05D006289 3.6e-73 279.3 248 57.3
Thhalv10027350m.g Eutrema salsugineum HOM05D004971 ORTHO05D006289 4.7e-73 278.9 218 67.0
HPP92_012921 Vanilla planifolia HOM05D004971 ORTHO05D006289 6.1e-73 278.5 280 49.6
HPP92_012900 Vanilla planifolia HOM05D004971 ORTHO05D006289 4.0e-72 275.8 280 49.3
unitig_748.g8739 Utricularia gibba HOM05D004971 ORTHO05D006289 6.8e-72 275.0 301 49.2
HanXRQChr03g0061421 Helianthus annuus HOM05D004971 ORTHO05D006289 3.7e-70 269.2 246 53.7
CsaV3_1G020790 Cucumis sativus L. HOM05D004971 ORTHO05D006289 4.8e-70 268.9 252 55.6
Thhalv10026861m.g Eutrema salsugineum HOM05D004971 ORTHO05D006289 1.1e-69 267.7 213 64.3
Thhalv10027410m.g Eutrema salsugineum HOM05D004971 ORTHO05D006289 1.1e-69 267.7 213 64.3
Actinidia32663 Actinidia chinensis HOM05D004971 ORTHO05D006289 5.9e-68 261.9 273 49.8
Cfa003218 Carpinus fangiana HOM05D001382 ORTHO05D001266 1.0e-67 261.2 217 58.5
Manes.16G112100 Manihot esculenta HOM05D004971 ORTHO05D006289 2.5e-66 256.5 208 60.6
MELO3C024707.2 Cucumis melo HOM05D004971 ORTHO05D006289 4.2e-66 255.8 278 48.6
Oeu017816.1 Olea europaea HOM05D004971 ORTHO05D006289 4.2e-66 255.8 241 53.9
Lj7A659G31 Lonicera japonica HOM05D004971 ORTHO05D006289 7.2e-66 255.0 266 51.9
Sed0000382 Sechium edule HOM05D004971 ORTHO05D006289 9.4e-66 254.6 241 53.5
AagrBONN_evm.TU.Sc2ySwM_117.3390 Anthoceros agrestis HOM05D004971 ORTHO05D006289 1.2e-65 254.2 271 49.4
vmacro06238 Vaccinium macrocarpon HOM05D004971 ORTHO05D006289 4.7e-65 252.3 297 47.5
Mapoly0002s0233 Marchantia polymorpha HOM05D004971 ORTHO05D006289 7.7e-60 235.0 294 41.5
Lalb_Chr14g0371731 Lupinus albus HOM05D004971 ORTHO05D006289 6.6e-59 231.9 260 46.2
CDE11G0552 Ceratophyllum demersum HOM05D004971 ORTHO05D006289 2.5e-58 229.9 263 45.6
SMO232G0003 Selaginella moellendorffii HOM05D004971 ORTHO05D006289 2.1e-57 226.9 274 42.0
SEGI_33858 Sequoiadendron giganteum HOM05D004971 ORTHO05D006289 2.8e-57 226.5 368 37.8
SMO241G0030 Selaginella moellendorffii HOM05D004971 ORTHO05D006289 8.0e-57 224.9 276 41.7
DCAR_028679 Daucus carota HOM05D004971 ORTHO05D006289 1.4e-56 224.2 282 46.1
Pp3c17_15270 Physcomitrium patens HOM05D004971 ORTHO05D006289 7.0e-53 211.8 301 38.5
Duzib150G1337 Durio zibethinus HOM05D004971 ORTHO05D006289 1.2e-52 211.1 188 56.4
Nitab4.5_0002165g0080 Nicotiana tabacum HOM05D004971 ORTHO05D006289 1.3e-51 207.6 269 43.1
CSS0049746 Camellia sinensis var. sinensis HOM05D004971 ORTHO05D006289 8.0e-49 198.4 194 53.6
ATR0315G075 Amborella trichopoda HOM05D004971 ORTHO05D006289 4.4e-47 192.6 201 48.3
Lalb_Chr24g0397391 Lupinus albus HOM05D004971 ORTHO05D006289 1.3e-46 191.0 185 49.7
MD02G1058100 Malus domestica HOM05D004971 ORTHO05D006289 1.1e-45 188.0 239 41.8
CDE05G3470 Ceratophyllum demersum HOM05D004971 ORTHO05D006289 1.2e-41 174.5 123 65.0
MCO09G154 Micromonas commoda HOM05D004971 ORTHO05D006289 3.4e-39 166.4 301 34.6
EL10Ac8g18422 Beta vulgaris HOM05D004971 ORTHO05D006289 1.3e-38 164.5 139 59.7
CBR_g687 Chara braunii HOM05D004971 ORTHO05D006289 2.1e-36 157.1 455 27.3
Ca_17315_v3 Cicer arietinum L. HOM05D004971 ORTHO05D006289 3.3e-34 149.8 177 47.5
Zm00001eb198370 Zea mays HOM05D004971 ORTHO05D006289 6.8e-32 142.1 185 44.9
Cre15.g636450 Chlamydomonas reinhardtii HOM05D004971 ORTHO05D006289 3.2e-29 133.3 392 27.6
Lj4g0009518 Lotus japonicus HOM05D004971 ORTHO05D006289 4.6e-28 129.4 76 73.7
PRCOL_00000240 Prasinoderma coloniale HOM05D004971 ORTHO05D006289 8.6e-27 125.2 319 28.2
MBI04_g02609_MAGBIO Magnolia biondii HOM05D004971 ORTHO05D000022 2.5e-26 123.6 138 50.0
Haze_02526 Corylus avellana HOM05D004971 ORTHO05D006289 4.0e-24 116.3 131 46.6
arahy.Tifrunner.gnm1.ann1.D57MTL Arachis hypogaea HOM05D004971 ORTHO05D006289 2.0e-23 114.0 145 41.4
Cpa.g.sc40.24 Carica papaya HOM05D004971 ORTHO05D006289 2.2e-22 110.5 58 77.6
arahy.Tifrunner.gnm1.ann1.2J0XRF Arachis hypogaea HOM05D004971 ORTHO05D006289 1.2e-20 104.8 146 37.7
Haze_02523 Corylus avellana HOM05D004971 ORTHO05D006289 2.1e-20 104.0 121 47.1
CSS0032398 Camellia sinensis var. sinensis HOM05D004971 ORTHO05D006289 6.0e-20 102.4 71 64.8
Nitab4.5_0002165g0090 Nicotiana tabacum HOM05D004971 ORTHO05D006289 1.3e-17 94.7 57 68.4
Lalb_Chr24g0397371 Lupinus albus HOM05D004971 ORTHO05D006289 4.0e-16 89.7 134 39.6
Actinidia07401 Actinidia chinensis HOM05D004971 ORTHO05D006289 3.2e-13 80.1 57 64.9
MBI19_g42779_MAGBIO Magnolia biondii HOM05D004971 ORTHO05D006289 7.1e-13 79.0 169 34.3
Nitab4.5_0001706g0070 Nicotiana tabacum HOM05D004971 ORTHO05D006289 1.0e-11 75.1 72 51.4
MBI19_g24589_MAGBIO Magnolia biondii HOM05D004971 ORTHO05D006289 2.8e-09 67.0 63 49.2
FvH4_7g02480 Fragaria vesca HOM05D004971 ORTHO05D022553 3.1e-08 63.5 38 68.4
FvH4_7g02600 Fragaria vesca HOM05D004971 ORTHO05D022553 3.1e-08 63.5 38 68.4
Nitab4.5_0001706g0080 Nicotiana tabacum HOM05D004971 ORTHO05D006289 1.2e-07 61.6 29 86.2
CiPaw.05G218700 Carya illinoinensis HOM05D004971 ORTHO05D006289 7.6e-07 58.9 32 75.0
Haze_02522 Corylus avellana HOM05D004971 ORTHO05D006289 8.4e-06 55.5 87 35.6


User provided reference genes

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