Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p18910 Brassica napus HOM05D000504 ORTHO05D000403 1.0e-120 436.8 225 100.0
BcaC01g06133 Brassica carinata HOM05D000504 ORTHO05D000403 2.7e-73 279.3 154 96.8
BcaB01g04161 Brassica carinata HOM05D000504 ORTHO05D000403 7.6e-68 261.2 156 90.4
BcaB01g04160 Brassica carinata HOM05D000504 ORTHO05D000403 4.9e-67 258.5 158 89.9
BcaB08g35514 Brassica carinata HOM05D000504 ORTHO05D000403 1.4e-61 240.4 158 83.5
Sp6g13840 Schrenkiella parvula HOM05D000504 ORTHO05D000403 1.3e-59 233.8 158 82.3
AT5G51600 Arabidopsis thaliana HOM05D000504 ORTHO05D000403 1.3e-54 217.2 154 81.2
BcaC04g20653 Brassica carinata HOM05D000504 ORTHO05D000403 1.6e-54 216.9 158 77.8
AL8G25880 Arabidopsis lyrata HOM05D000504 ORTHO05D000403 9.0e-53 211.1 152 79.6
Carub.0008s1164 Capsella rubella HOM05D000504 ORTHO05D000403 9.9e-52 207.6 152 78.9
CARHR264400 Cardamine hirsuta HOM05D000504 ORTHO05D000403 6.2e-46 188.3 155 73.5
Thhalv10012827m.g Eutrema salsugineum HOM05D000504 ORTHO05D000403 4.5e-36 155.6 160 61.9
THA.LOC104811509 Tarenaya hassleriana HOM05D000504 ORTHO05D000403 5.5e-26 122.1 166 52.4
Aa31sc16G150 Aethionema arabicum HOM05D000504 ORTHO05D000403 2.7e-25 119.8 155 49.0
THA.LOC104825073 Tarenaya hassleriana HOM05D000504 ORTHO05D000403 2.0e-23 113.6 169 50.3
COL.COLO4_14181 Corchorus olitorius HOM05D000504 ORTHO05D000403 1.7e-19 100.5 172 44.2
Ciclev10004422m.g Citrus clementina HOM05D000504 ORTHO05D000403 3.8e-19 99.4 158 46.2
Aqoxy7G00611 Aquilegia oxysepala HOM05D000504 ORTHO05D000403 9.4e-18 94.7 156 43.6
PGR042G0372 Punica granatum HOM05D000504 ORTHO05D000403 1.0e-16 91.3 160 42.5
GSVIVG01018512001 Vitis vinifera HOM05D000504 ORTHO05D000403 1.8e-16 90.5 156 42.3
Cc02_g03890 Coffea canephora HOM05D000504 ORTHO05D000403 2.3e-16 90.1 158 41.1
Peaxi162Scf01372g00031 Petunia axillaris HOM05D000504 ORTHO05D000403 2.3e-16 90.1 162 40.7
TAR375G0909 Trochodendron aralioides HOM05D000504 ORTHO05D000403 5.1e-16 89.0 154 42.9
Potri.012G129600 Populus trichocarpa HOM05D000504 ORTHO05D000403 6.7e-16 88.6 152 44.7
Thecc.03G161600 Theobroma cacao HOM05D000504 ORTHO05D000403 1.1e-15 87.8 171 41.5
Dinv28533 Davidia involucrata HOM05D000504 ORTHO05D000403 1.5e-15 87.4 162 42.6
Oeu042585.1 Olea europaea HOM05D000504 ORTHO05D000403 2.0e-15 87.0 152 43.4
Potri.015G131400 Populus trichocarpa HOM05D000504 ORTHO05D000403 2.0e-15 87.0 161 41.0
CAN.G1022.2 Capsicum annuum HOM05D000504 ORTHO05D000403 2.6e-15 86.7 158 42.4
Duzib068G1114 Durio zibethinus HOM05D000504 ORTHO05D000403 2.6e-15 86.7 163 41.7
Eucgr.A02875 Eucalyptus grandis HOM05D000504 ORTHO05D000403 2.6e-15 86.7 155 41.9
Lsat_1_v5_gn_8_8160 Lactuca sativa HOM05D000504 ORTHO05D000403 2.6e-15 86.7 151 44.4
Duzib205G0098 Durio zibethinus HOM05D000504 ORTHO05D000403 3.3e-15 86.3 183 39.3
Solyc03g007130.4 Solanum lycopersicum HOM05D000504 ORTHO05D000403 3.3e-15 86.3 161 43.5
Nitab4.5_0014314g0010 Nicotiana tabacum HOM05D000504 ORTHO05D000403 4.4e-15 85.9 162 38.9
TWI23G0479 Tripterygium wilfordii HOM05D000504 ORTHO05D000403 4.4e-15 85.9 167 43.1
Sopen03g003120 Solanum pennellii HOM05D000504 ORTHO05D000403 5.7e-15 85.5 160 43.8
PGSC0003DMG400031025 Solanum tuberosum HOM05D000504 ORTHO05D000403 7.4e-15 85.1 162 44.4
Nitab4.5_0000072g0390 Nicotiana tabacum HOM05D000504 ORTHO05D000403 9.7e-15 84.7 162 38.3
Glyma.10G178100 Glycine max HOM05D000504 ORTHO05D000403 1.3e-14 84.3 165 38.8
Lj1A984T87 Lonicera japonica HOM05D000504 ORTHO05D000403 1.3e-14 84.3 161 40.4
Sabra15G0144500 Salix brachista HOM05D000504 ORTHO05D000403 2.8e-14 83.2 161 41.0
CSS0031659 Camellia sinensis var. sinensis HOM05D000504 ORTHO05D000403 3.7e-14 82.8 164 40.2
Sed0014513 Sechium edule HOM05D000504 ORTHO05D000403 3.7e-14 82.8 158 40.5
Oeu022506.1 Olea europaea HOM05D000504 ORTHO05D000403 4.8e-14 82.4 153 38.6
Phvul.007G111500 Phaseolus vulgaris HOM05D000504 ORTHO05D000403 4.8e-14 82.4 165 38.8
Hma1.2p1_0099F.1_g048910 Hydrangea macrophylla HOM05D000504 ORTHO05D000403 6.3e-14 82.0 159 40.9
Cpa.g.sc3.270 Carica papaya HOM05D000504 ORTHO05D000403 1.1e-13 81.3 159 40.9
ECA233G0370 Erigeron canadensis HOM05D000504 ORTHO05D000403 1.1e-13 81.3 155 42.6
Lalb_Chr06g0168911 Lupinus albus HOM05D000504 ORTHO05D000403 1.4e-13 80.9 153 40.5
VMungo0720G2133 Vigna mungo HOM05D000504 ORTHO05D000403 1.4e-13 80.9 165 37.0
CiPaw.04G063500 Carya illinoinensis HOM05D000504 ORTHO05D000403 2.4e-13 80.1 157 38.9
ClCG05G007490 Citrullus lanatus HOM05D000504 ORTHO05D000403 3.1e-13 79.7 162 40.1
Cfa008233 Carpinus fangiana HOM05D000504 ORTHO05D000403 4.1e-13 79.3 159 36.5
Atru.chr1.633 Acer truncatum HOM05D000504 ORTHO05D000403 5.3e-13 79.0 174 40.8
TAR374G0403 Trochodendron aralioides HOM05D000504 ORTHO05D000403 5.3e-13 79.0 177 36.2
Glyma.20G212100 Glycine max HOM05D000504 ORTHO05D000403 7.0e-13 78.6 165 35.8
QL12p039468 Quercus lobata HOM05D000504 ORTHO05D000403 9.1e-13 78.2 160 39.4
Nn1g01216 Nelumbo nucifera HOM05D000504 ORTHO05D000403 1.6e-12 77.4 172 38.4
Gohir.A09G044000 Gossypium hirsutum HOM05D000504 ORTHO05D000403 2.0e-12 77.0 161 42.2
DCAR_020221 Daucus carota HOM05D000504 ORTHO05D000403 2.6e-12 76.6 154 39.6
Sed0000836 Sechium edule HOM05D000504 ORTHO05D000403 2.6e-12 76.6 153 41.8
MSTRG.8801 Avicennia marina HOM05D000504 ORTHO05D000403 3.5e-12 76.3 182 34.1
Sed0015124 Sechium edule HOM05D000504 ORTHO05D000403 3.5e-12 76.3 161 39.8
Haze_13822 Corylus avellana HOM05D000504 ORTHO05D000403 4.5e-12 75.9 159 35.8
Gohir.A07G039300 Gossypium hirsutum HOM05D000504 ORTHO05D000403 4.5e-12 75.9 155 43.9
CiPaw.03G097200 Carya illinoinensis HOM05D000504 ORTHO05D000403 5.9e-12 75.5 167 37.1
HanXRQChr08g0224041 Helianthus annuus HOM05D000504 ORTHO05D000403 7.7e-12 75.1 164 41.5
arahy.Tifrunner.gnm1.ann1.L32ZBM Arachis hypogaea HOM05D000504 ORTHO05D000403 1.7e-11 73.9 154 37.7
Gohir.D09G045300 Gossypium hirsutum HOM05D000504 ORTHO05D000403 1.7e-11 73.9 161 41.6
Gorai.006G065100 Gossypium raimondii HOM05D000504 ORTHO05D000403 1.7e-11 73.9 161 41.6
arahy.Tifrunner.gnm1.ann1.ASBV53 Arachis hypogaea HOM05D000504 ORTHO05D000403 2.2e-11 73.6 159 37.7
Gohir.D07G043500 Gossypium hirsutum HOM05D000504 ORTHO05D000403 2.2e-11 73.6 157 43.3
Lalb_Chr02g0149941 Lupinus albus HOM05D000504 ORTHO05D000403 2.2e-11 73.6 152 38.8
Nitab4.5_0000205g0160 Nicotiana tabacum HOM05D000504 ORTHO05D000403 2.2e-11 73.6 171 38.6
DCAR_018126 Daucus carota HOM05D000504 ORTHO05D000403 2.9e-11 73.2 167 34.7
Peaxi162Scf00132g01312 Petunia axillaris HOM05D000504 ORTHO05D000403 2.9e-11 73.2 157 39.5
PGSC0003DMG400027381 Solanum tuberosum HOM05D000504 ORTHO05D000403 5.0e-11 72.4 167 37.1
MBI04_g20745_MAGBIO Magnolia biondii HOM05D000504 ORTHO05D000403 6.5e-11 72.0 192 36.5
MELO3C006834.2 Cucumis melo HOM05D000504 ORTHO05D000403 8.5e-11 71.6 161 38.5
Sopen11g029950 Solanum pennellii HOM05D000504 ORTHO05D000403 8.5e-11 71.6 167 37.1
SGA_v2.0_scaffold2G01137 Striga asiatica HOM05D000504 ORTHO05D000403 8.5e-11 71.6 179 33.5
TWI39G1058 Tripterygium wilfordii HOM05D000504 ORTHO05D000403 8.5e-11 71.6 162 34.6
Gorai.001G046500 Gossypium raimondii HOM05D000504 ORTHO05D000403 1.1e-10 71.2 155 41.9
Ca_09892_v3 Cicer arietinum L. HOM05D000504 ORTHO05D000403 1.5e-10 70.9 170 35.3
MD07G1257900 Malus domestica HOM05D000504 ORTHO05D000403 1.9e-10 70.5 155 38.1
Solyc11g072280.3 Solanum lycopersicum HOM05D000504 ORTHO05D000403 1.9e-10 70.5 167 37.1
AUR62005580 Chenopodium quinoa HOM05D000504 ORTHO05D000403 2.5e-10 70.1 167 37.1
Migut.F01171 Erythranthe guttata HOM05D000504 ORTHO05D000403 2.5e-10 70.1 159 34.0
SalBow4G0586 Salvia bowleyana HOM05D000504 ORTHO05D000403 2.5e-10 70.1 178 32.0
SalBow4G2565 Salvia bowleyana HOM05D000504 ORTHO05D000403 2.5e-10 70.1 178 32.0
Nitab4.5_0001589g0030 Nicotiana tabacum HOM05D000504 ORTHO05D000403 3.2e-10 69.7 165 39.4
CsaV3_3G016350 Cucumis sativus L. HOM05D000504 ORTHO05D000403 4.2e-10 69.3 156 40.4
Lj8C36T7 Lonicera japonica HOM05D000504 ORTHO05D000403 4.2e-10 69.3 161 37.3
unitig_0.g2496 Utricularia gibba HOM05D000504 ORTHO05D000403 4.2e-10 69.3 156 38.5
MELO3C005420.2 Cucumis melo HOM05D000504 ORTHO05D000403 5.5e-10 68.9 162 38.9
ATR0810G006 Amborella trichopoda HOM05D000504 ORTHO05D000403 9.4e-10 68.2 163 36.2
CSS0020275 Camellia sinensis var. sinensis HOM05D000504 ORTHO05D000403 9.4e-10 68.2 163 32.5
Medtr1g076700 Medicago truncatula HOM05D000504 ORTHO05D000403 1.2e-09 67.8 170 33.5
AUR62024150 Chenopodium quinoa HOM05D000504 ORTHO05D000403 1.6e-09 67.4 167 33.5
CsaV3_5G005380 Cucumis sativus L. HOM05D000504 ORTHO05D000403 2.1e-09 67.0 166 36.7
PSO478G1947 Papaver somniferum HOM05D000504 ORTHO05D000403 2.1e-09 67.0 148 39.2
PSO782G1378 Papaver somniferum HOM05D000504 ORTHO05D000403 2.1e-09 67.0 148 39.2
MSTRG.120 Avicennia marina HOM05D000504 ORTHO05D000403 2.7e-09 66.6 160 35.6
Hund13374 Selenicereus undatus HOM05D000504 ORTHO05D000403 2.7e-09 66.6 166 36.1
DCAR_009434 Daucus carota HOM05D000504 ORTHO05D000403 4.7e-09 65.9 159 32.7
Migut.F00430 Erythranthe guttata HOM05D000504 ORTHO05D000403 4.7e-09 65.9 180 32.8
Dinv43716 Davidia involucrata HOM05D000504 ORTHO05D000403 1.0e-08 64.7 148 36.5
TWI59G0114 Tripterygium wilfordii HOM05D000504 ORTHO05D000403 2.3e-08 63.5 162 37.0
ClCG01G005090 Citrullus lanatus HOM05D000504 ORTHO05D000403 3.0e-08 63.2 157 38.9
MD01G1185800 Malus domestica HOM05D000504 ORTHO05D000403 6.7e-08 62.0 167 35.9
Eucgr.K00145 Eucalyptus grandis HOM05D000504 ORTHO05D000403 1.1e-07 61.2 160 35.6
Rhsim09G0193700 Rhododendron simsii HOM05D000504 ORTHO05D000403 1.5e-07 60.8 138 40.6
Oeu021727.1 Olea europaea HOM05D000504 ORTHO05D000403 2.0e-07 60.5 161 36.6
Prupe.2G146300 Prunus persica HOM05D000504 ORTHO05D000403 2.0e-07 60.5 163 38.7
COL.COLO4_12553 Corchorus olitorius HOM05D000504 ORTHO05D000403 2.6e-07 60.1 154 39.0
Duzib133G0366 Durio zibethinus HOM05D000504 ORTHO05D000403 2.6e-07 60.1 163 35.0
Medtr6g061690 Medicago truncatula HOM05D000504 ORTHO05D000403 2.6e-07 60.1 153 30.7
Sabra12G0097500 Salix brachista HOM05D000504 ORTHO05D000403 3.3e-07 59.7 157 35.0
CDE11G0077 Ceratophyllum demersum HOM05D000504 ORTHO05D000403 4.4e-07 59.3 153 34.0
Gohir.D09G174000 Gossypium hirsutum HOM05D000504 ORTHO05D000403 5.7e-07 58.9 175 36.0
Gorai.006G196000 Gossypium raimondii HOM05D000504 ORTHO05D000403 5.7e-07 58.9 175 36.0
TPR.G10661 Trifolium pratense HOM05D000504 ORTHO05D000403 5.7e-07 58.9 155 35.5
EL10Ac6g13451 Beta vulgaris HOM05D000504 ORTHO05D000403 7.5e-07 58.5 167 30.5
CSS0015341 Camellia sinensis var. sinensis HOM05D000504 ORTHO05D000403 1.3e-06 57.8 140 36.4
CAN.G1187.6 Capsicum annuum HOM05D000504 ORTHO05D000403 1.7e-06 57.4 169 33.1
Gohir.A08G134000 Gossypium hirsutum HOM05D000504 ORTHO05D000403 2.2e-06 57.0 155 32.9
Manes.05G044733 Manihot esculenta HOM05D000504 ORTHO05D000403 2.2e-06 57.0 154 37.0
Zm00001eb439650 Zea mays HOM05D000504 ORTHO05D000403 2.8e-06 56.6 157 35.0
Gohir.D08G155200 Gossypium hirsutum HOM05D000504 ORTHO05D000403 4.8e-06 55.8 160 31.2
Ah.02g130640 Amaranthus hybridus HOM05D000504 ORTHO05D000403 8.2e-06 55.1 168 31.5
ECA232G0823 Erigeron canadensis HOM05D000504 ORTHO05D000403 8.2e-06 55.1 172 33.7
MD02G1203200 Malus domestica HOM05D000504 ORTHO05D000403 8.2e-06 55.1 150 37.3
Rhsim01G0147600 Rhododendron simsii HOM05D000504 ORTHO05D000403 8.2e-06 55.1 154 33.1


User provided reference genes

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