Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p17690 Brassica napus HOM05D003276 ORTHO05D003809 2.4e-60 235.3 120 100.0
BcaC01g06251 Brassica carinata HOM05D003276 ORTHO05D003809 1.2e-59 233.0 118 100.0
A03p15160 Brassica napus HOM05D003276 ORTHO05D003809 7.1e-57 223.8 118 94.9
BcaNung05986 Brassica carinata HOM05D003276 ORTHO05D003809 5.1e-47 191.0 123 83.7
Thhalv10014378m.g Eutrema salsugineum HOM05D003276 ORTHO05D003809 5.1e-47 191.0 123 82.9
AL8G28120 Arabidopsis lyrata HOM05D003276 ORTHO05D003809 3.1e-44 181.8 122 80.3
BcaB05g22038 Brassica carinata HOM05D003276 ORTHO05D003809 5.3e-44 181.0 125 80.8
AT5G53420 Arabidopsis thaliana HOM05D003276 ORTHO05D003809 9.1e-44 180.3 121 80.2
CARHR266540 Cardamine hirsuta HOM05D003276 ORTHO05D003809 1.3e-42 176.4 124 78.2
BcaC04g20454 Brassica carinata HOM05D003276 ORTHO05D003809 6.5e-42 174.1 141 71.6
C09p43280 Brassica napus HOM05D003276 ORTHO05D003809 6.5e-42 174.1 141 71.6
BolC9t57209H Brassica oleracea HOM05D003276 ORTHO05D003809 6.5e-42 174.1 141 71.6
A10p10890 Brassica napus HOM05D003276 ORTHO05D003809 1.4e-41 172.9 141 70.2
BraA10t43177Z Brassica rapa HOM05D003276 ORTHO05D003809 1.4e-41 172.9 141 70.2
Carub.0008s1358 Capsella rubella HOM05D003276 ORTHO05D003809 3.2e-41 171.8 123 77.2
BcaC03g14424 Brassica carinata HOM05D003276 ORTHO05D003809 1.0e-39 166.8 125 76.0
BolC2t07977H Brassica oleracea HOM05D003276 ORTHO05D003809 1.0e-39 166.8 125 76.0
Aa31LG3G9590 Aethionema arabicum HOM05D003276 ORTHO05D003809 4.1e-36 154.8 123 69.9
THA.LOC104825142 Tarenaya hassleriana HOM05D003276 ORTHO05D003809 3.3e-30 135.2 134 61.2
THA.LOC104800294 Tarenaya hassleriana HOM05D003276 ORTHO05D003809 7.7e-27 124.0 134 56.7
CARHR235600 Cardamine hirsuta HOM05D003276 ORTHO05D003809 1.2e-24 116.7 124 54.8
AT4G27900 Arabidopsis thaliana HOM05D003276 ORTHO05D003809 2.7e-24 115.5 122 55.7
AL7G24730 Arabidopsis lyrata HOM05D003276 ORTHO05D003809 3.6e-24 115.2 122 55.7
Sp6g15550 Schrenkiella parvula HOM05D003276 ORTHO05D003809 4.7e-24 114.8 75 80.0
Sp7g25870 Schrenkiella parvula HOM05D003276 ORTHO05D003809 8.0e-24 114.0 122 54.1
Carub.0007s1292 Capsella rubella HOM05D003276 ORTHO05D003809 5.7e-22 107.8 122 54.1
THA.LOC104811921 Tarenaya hassleriana HOM05D003276 ORTHO05D003809 9.7e-22 107.1 136 50.7
Cpa.g.sc3.74 Carica papaya HOM05D003276 ORTHO05D003809 1.8e-20 102.8 130 49.2
Thhalv10026081m.g Eutrema salsugineum HOM05D003276 ORTHO05D003809 2.4e-20 102.4 122 51.6
BcaC07g38297 Brassica carinata HOM05D003276 ORTHO05D003809 4.1e-20 101.7 119 52.1
C08p10410 Brassica napus HOM05D003276 ORTHO05D003809 4.1e-20 101.7 119 52.1
BolC8t48727H Brassica oleracea HOM05D003276 ORTHO05D003809 4.1e-20 101.7 119 52.1
BcaB03g12546 Brassica carinata HOM05D003276 ORTHO05D003809 5.3e-20 101.3 123 50.4
BraA08t33990Z Brassica rapa HOM05D003276 ORTHO05D003809 9.1e-20 100.5 119 52.1
A08p20320 Brassica napus HOM05D003276 ORTHO05D003809 2.7e-19 99.0 119 51.3
Gohir.A08G093600 Gossypium hirsutum HOM05D003276 ORTHO05D003809 2.7e-19 99.0 130 51.5
Gohir.D08G104200 Gossypium hirsutum HOM05D003276 ORTHO05D003809 4.5e-19 98.2 130 51.5
Manes.06G159900 Manihot esculenta HOM05D003276 ORTHO05D003809 2.2e-18 95.9 133 48.1
Thecc.03G197500 Theobroma cacao HOM05D003276 ORTHO05D003809 2.2e-18 95.9 130 50.0
TWI39G0294 Tripterygium wilfordii HOM05D003276 ORTHO05D003809 8.5e-18 94.0 130 50.0
CiPaw.06G010300 Carya illinoinensis HOM05D003276 ORTHO05D003809 1.1e-17 93.6 129 48.8
COL.COLO4_11268 Corchorus olitorius HOM05D003276 ORTHO05D003809 1.1e-17 93.6 130 48.5
Gorai.004G111500 Gossypium raimondii HOM05D003276 ORTHO05D003809 1.1e-17 93.6 130 50.0
QL09p009452 Quercus lobata HOM05D003276 ORTHO05D003809 1.5e-17 93.2 130 47.7
Haze_00224 Corylus avellana HOM05D003276 ORTHO05D003809 2.5e-17 92.4 130 50.0
Duzib068G1205 Durio zibethinus HOM05D003276 ORTHO05D003809 5.5e-17 91.3 130 49.2
Dinv35326 Davidia involucrata HOM05D003276 ORTHO05D003809 1.2e-16 90.1 131 48.1
Phvul.001G074900 Phaseolus vulgaris HOM05D003276 ORTHO05D003809 1.6e-16 89.7 130 44.6
Actinidia08641 Actinidia chinensis HOM05D003276 ORTHO05D003809 2.7e-16 89.0 130 46.9
arahy.Tifrunner.gnm1.ann1.5WR99K Arachis hypogaea HOM05D003276 ORTHO05D003809 2.7e-16 89.0 131 45.8
arahy.Tifrunner.gnm1.ann1.FQS251 Arachis hypogaea HOM05D003276 ORTHO05D003809 3.6e-16 88.6 129 45.0
CAN.G108.69 Capsicum annuum HOM05D003276 ORTHO05D003809 3.6e-16 88.6 131 46.6
Duzib084G0491 Durio zibethinus HOM05D003276 ORTHO05D003809 3.6e-16 88.6 130 46.2
Dinv29291 Davidia involucrata HOM05D003276 ORTHO05D003809 4.7e-16 88.2 130 46.2
Glyma.04G236400 Glycine max HOM05D003276 ORTHO05D003809 4.7e-16 88.2 129 47.3
TAR629G3036 Trochodendron aralioides HOM05D003276 ORTHO05D003809 4.7e-16 88.2 130 44.6
MBI06_g08473_MAGBIO Magnolia biondii HOM05D003276 ORTHO05D003809 6.1e-16 87.8 129 48.8
arahy.Tifrunner.gnm1.ann1.BVW291 Arachis hypogaea HOM05D003276 ORTHO05D003809 8.0e-16 87.4 131 45.0
CiPaw.05G251500 Carya illinoinensis HOM05D003276 ORTHO05D003809 1.0e-15 87.0 131 46.6
Hma1.2p1_0404F.1_g145470 Hydrangea macrophylla HOM05D003276 ORTHO05D003809 1.0e-15 87.0 131 46.6
Phvul.009G053300 Phaseolus vulgaris HOM05D003276 ORTHO05D003809 1.0e-15 87.0 130 44.6
arahy.Tifrunner.gnm1.ann1.V8BXHT Arachis hypogaea HOM05D003276 ORTHO05D003809 1.4e-15 86.7 129 44.2
Glyma.06G127900 Glycine max HOM05D003276 ORTHO05D003809 1.8e-15 86.3 129 46.5
Nitab4.5_0001520g0010 Nicotiana tabacum HOM05D003276 ORTHO05D003809 1.8e-15 86.3 130 43.1
Nitab4.5_0015164g0010 Nicotiana tabacum HOM05D003276 ORTHO05D003809 1.8e-15 86.3 131 43.5
Ca_12808_v3 Cicer arietinum L. HOM05D003276 ORTHO05D003809 2.3e-15 85.9 130 44.6
PGR142G2099 Punica granatum HOM05D003276 ORTHO05D003809 2.3e-15 85.9 130 47.7
VMungo0647G1541 Vigna mungo HOM05D003276 ORTHO05D003809 2.3e-15 85.9 132 44.7
Lalb_Chr23g0271581 Lupinus albus HOM05D003276 ORTHO05D003809 3.0e-15 85.5 127 45.7
Psat6g004440 Pisum sativum HOM05D003276 ORTHO05D003809 3.0e-15 85.5 129 43.4
GSVIVG01038707001 Vitis vinifera HOM05D003276 ORTHO05D003809 3.0e-15 85.5 130 45.4
Rhsim09G0205200 Rhododendron simsii HOM05D003276 ORTHO05D003809 4.0e-15 85.1 128 43.0
CANSAT21G0960 Cannabis sativa HOM05D003276 ORTHO05D003809 5.2e-15 84.7 130 44.6
Gohir.A05G414200 Gossypium hirsutum HOM05D003276 ORTHO05D003809 5.2e-15 84.7 127 48.8
Manes.14G006300 Manihot esculenta HOM05D003276 ORTHO05D003809 5.2e-15 84.7 131 44.3
VMungo1309G2735 Vigna mungo HOM05D003276 ORTHO05D003809 6.8e-15 84.3 130 43.8
Atru.chr2.1747 Acer truncatum HOM05D003276 ORTHO05D003809 8.8e-15 84.0 130 46.9
CSS0035082 Camellia sinensis var. sinensis HOM05D003276 ORTHO05D003809 8.8e-15 84.0 130 45.4
CSS0041355 Camellia sinensis var. sinensis HOM05D003276 ORTHO05D003809 8.8e-15 84.0 130 45.4
Ciclev10022287m.g Citrus clementina HOM05D003276 ORTHO05D003809 8.8e-15 84.0 130 43.1
Lj1g0015034 Lotus japonicus HOM05D003276 ORTHO05D003809 8.8e-15 84.0 129 41.9
Oeu030283.1 Olea europaea HOM05D003276 ORTHO05D003809 1.2e-14 83.6 125 45.6
Potri.015G014000 Populus trichocarpa HOM05D003276 ORTHO05D003809 1.2e-14 83.6 132 43.9
TPR.G12041 Trifolium pratense HOM05D003276 ORTHO05D003809 1.2e-14 83.6 129 41.9
Nn1g00228 Nelumbo nucifera HOM05D003276 ORTHO05D003809 1.5e-14 83.2 131 45.8
PGR042G2895 Punica granatum HOM05D003276 ORTHO05D003809 1.5e-14 83.2 128 44.5
TAR375G0207 Trochodendron aralioides HOM05D003276 ORTHO05D003809 1.5e-14 83.2 130 46.2
TAR375G0411 Trochodendron aralioides HOM05D003276 ORTHO05D003809 1.5e-14 83.2 130 46.2
Actinidia34213 Actinidia chinensis HOM05D003276 ORTHO05D003809 2.0e-14 82.8 131 44.3
Cc02_g01650 Coffea canephora HOM05D003276 ORTHO05D003809 2.0e-14 82.8 126 46.8
Lj1g0017016 Lotus japonicus HOM05D003276 ORTHO05D003809 2.6e-14 82.4 129 45.7
Lalb_Chr08g0240291 Lupinus albus HOM05D003276 ORTHO05D003809 2.6e-14 82.4 127 44.9
Gohir.D04G001900 Gossypium hirsutum HOM05D003276 ORTHO05D003809 3.4e-14 82.0 127 47.2
Gorai.012G003000 Gossypium raimondii HOM05D003276 ORTHO05D003809 3.4e-14 82.0 127 47.2
TWI14G1218 Tripterygium wilfordii HOM05D003276 ORTHO05D003809 3.4e-14 82.0 130 46.9
MSTRG.54 Avicennia marina HOM05D003276 ORTHO05D003809 4.4e-14 81.6 129 45.0
Potri.012G014000 Populus trichocarpa HOM05D003276 ORTHO05D003809 4.4e-14 81.6 133 42.9
PGSC0003DMG400009122 Solanum tuberosum HOM05D003276 ORTHO05D003809 4.4e-14 81.6 130 44.6
Sc13g0009790 Simmondsia chinensis HOM05D003276 ORTHO05D003809 5.7e-14 81.3 101 50.5
TWI23G0585 Tripterygium wilfordii HOM05D003276 ORTHO05D003809 5.7e-14 81.3 130 46.2
Oeu037086.1 Olea europaea HOM05D003276 ORTHO05D003809 7.5e-14 80.9 130 43.1
Sabra15G0011600 Salix brachista HOM05D003276 ORTHO05D003809 7.5e-14 80.9 131 43.5
Migut.F00223 Erythranthe guttata HOM05D003276 ORTHO05D003809 9.8e-14 80.5 126 42.1
Peaxi162Scf00550g00548 Petunia axillaris HOM05D003276 ORTHO05D003809 9.8e-14 80.5 130 43.1
Gorai.008G269300 Gossypium raimondii HOM05D003276 ORTHO05D003809 1.3e-13 80.1 124 46.8
vmacro10116 Vaccinium macrocarpon HOM05D003276 ORTHO05D003809 1.3e-13 80.1 129 41.1
Gohir.D11G014800 Gossypium hirsutum HOM05D003276 ORTHO05D003809 2.2e-13 79.3 129 44.2
Medtr1g008220 Medicago truncatula HOM05D003276 ORTHO05D003809 2.2e-13 79.3 129 41.1
vmacro06538 Vaccinium macrocarpon HOM05D003276 ORTHO05D003809 2.2e-13 79.3 129 41.1
MELO3C008491.2 Cucumis melo HOM05D003276 ORTHO05D003809 2.8e-13 79.0 131 42.7
Hund20995 Selenicereus undatus HOM05D003276 ORTHO05D003809 2.8e-13 79.0 129 43.4
Solyc03g083400.3 Solanum lycopersicum HOM05D003276 ORTHO05D003809 2.8e-13 79.0 130 45.4
Sopen03g023170 Solanum pennellii HOM05D003276 ORTHO05D003809 2.8e-13 79.0 130 45.4
ClCG01G000460 Citrullus lanatus HOM05D003276 ORTHO05D003809 3.7e-13 78.6 112 47.3
Gohir.A12G250400 Gossypium hirsutum HOM05D003276 ORTHO05D003809 3.7e-13 78.6 124 46.8
Gohir.D12G251200 Gossypium hirsutum HOM05D003276 ORTHO05D003809 3.7e-13 78.6 124 46.0
Gohir.A11G014700 Gossypium hirsutum HOM05D003276 ORTHO05D003809 6.3e-13 77.8 128 44.5
Gorai.007G015200 Gossypium raimondii HOM05D003276 ORTHO05D003809 6.3e-13 77.8 128 44.5
Rhsim03G0208000 Rhododendron simsii HOM05D003276 ORTHO05D003809 6.3e-13 77.8 131 42.0
MSTRG.8518 Avicennia marina HOM05D003276 ORTHO05D003809 8.3e-13 77.4 128 45.3
TPR.G23309 Trifolium pratense HOM05D003276 ORTHO05D003809 8.3e-13 77.4 129 40.3
Aqoxy7G00091 Aquilegia oxysepala HOM05D003276 ORTHO05D003809 1.1e-12 77.0 128 43.8
CsaV3_3G019950 Cucumis sativus L. HOM05D003276 ORTHO05D003809 1.4e-12 76.6 130 42.3
Lj1A1015T33 Lonicera japonica HOM05D003276 ORTHO05D003809 1.4e-12 76.6 128 44.5
MELO3C005883.2 Cucumis melo HOM05D003276 ORTHO05D003809 1.8e-12 76.3 112 45.5
Lalb_Chr11g0066821 Lupinus albus HOM05D003276 ORTHO05D003809 1.8e-12 76.3 121 44.6
ClCG05G008890 Citrullus lanatus HOM05D003276 ORTHO05D003809 2.4e-12 75.9 130 42.3
CsaV3_5G000530 Cucumis sativus L. HOM05D003276 ORTHO05D003809 2.4e-12 75.9 112 45.5
Sabra12G0017800 Salix brachista HOM05D003276 ORTHO05D003809 2.4e-12 75.9 131 42.7
SalBow2G0551 Salvia bowleyana HOM05D003276 ORTHO05D003809 3.1e-12 75.5 130 43.8
Ca_16700_v3 Cicer arietinum L. HOM05D003276 ORTHO05D003809 4.1e-12 75.1 129 39.5
Medtr3g091340 Medicago truncatula HOM05D003276 ORTHO05D003809 5.4e-12 74.7 130 39.2
RcHm_v2.0_Chr1g0380881 Rosa chinensis HOM05D003276 ORTHO05D003809 5.4e-12 74.7 130 44.6
AUR62006104 Chenopodium quinoa HOM05D003276 ORTHO05D003809 7.0e-12 74.3 129 43.4
MBI07_g07105_MAGBIO Magnolia biondii HOM05D003276 ORTHO05D003809 7.0e-12 74.3 127 41.7
SGA_v2.0_scaffold192G40560 Striga asiatica HOM05D003276 ORTHO05D003809 7.0e-12 74.3 119 42.9
EL10Ac3g05297 Beta vulgaris HOM05D003276 ORTHO05D003809 1.2e-11 73.6 130 41.5
Sed0018456 Sechium edule HOM05D003276 ORTHO05D003809 1.2e-11 73.6 130 42.3
CSS0039935 Camellia sinensis var. sinensis HOM05D003276 ORTHO05D003809 2.0e-11 72.8 130 44.6
AUR62019388 Chenopodium quinoa HOM05D003276 ORTHO05D003809 2.0e-11 72.8 129 42.6
BcaB03g16341 Brassica carinata HOM05D003276 ORTHO05D003809 2.7e-11 72.4 66 63.6
Eucgr.K00370 Eucalyptus grandis HOM05D003276 ORTHO05D003809 3.5e-11 72.0 130 40.8
Sed0013328 Sechium edule HOM05D003276 ORTHO05D003809 3.5e-11 72.0 130 40.8
Ah.13g070160 Amaranthus hybridus HOM05D003276 ORTHO05D003809 4.5e-11 71.6 130 39.2
FAN10G2276 Fragaria x ananassa HOM05D003276 ORTHO05D003809 5.9e-11 71.2 130 44.6
FAN10G4131 Fragaria x ananassa HOM05D003276 ORTHO05D003809 5.9e-11 71.2 130 44.6
Oeu041047.3 Olea europaea HOM05D003276 ORTHO05D003809 5.9e-11 71.2 131 40.5
FvH4_7g31700 Fragaria vesca HOM05D003276 ORTHO05D003809 1.0e-10 70.5 130 43.8
FAN06G1499 Fragaria x ananassa HOM05D003276 ORTHO05D003809 1.0e-10 70.5 130 43.8
FAN06G2573 Fragaria x ananassa HOM05D003276 ORTHO05D003809 1.0e-10 70.5 130 43.8
unitig_46.g18817 Utricularia gibba HOM05D003276 ORTHO05D003809 1.3e-10 70.1 131 42.0
Lsat_1_v5_gn_2_135961 Lactuca sativa HOM05D003276 ORTHO05D003809 1.7e-10 69.7 133 38.3
HanXRQChr07g0206531 Helianthus annuus HOM05D003276 ORTHO05D003809 2.3e-10 69.3 136 40.4
Os05g0595300 Oryza sativa ssp. japonica HOM05D003276 ORTHO05D003809 2.3e-10 69.3 139 37.4
Prupe.2G310900 Prunus persica HOM05D003276 ORTHO05D003809 2.3e-10 69.3 131 41.2
Zm00001eb297870 Zea mays HOM05D003276 ORTHO05D003809 2.3e-10 69.3 105 43.8
unitig_37.g11981 Utricularia gibba HOM05D003276 ORTHO05D003809 2.9e-10 68.9 132 42.4
BcaNung01613 Brassica carinata HOM05D003276 ORTHO05D003809 3.8e-10 68.6 105 41.0
FAN01G2576 Fragaria x ananassa HOM05D003276 ORTHO05D003809 3.8e-10 68.6 130 43.1
Lj3C906G18 Lonicera japonica HOM05D003276 ORTHO05D003809 3.8e-10 68.6 129 42.6
MSTRG.27032 Avicennia marina HOM05D003276 ORTHO05D003809 5.0e-10 68.2 127 39.4
FAN03G0680 Fragaria x ananassa HOM05D003276 ORTHO05D003809 5.0e-10 68.2 130 42.3
FAN06G3022 Fragaria x ananassa HOM05D003276 ORTHO05D003809 5.0e-10 68.2 130 42.3
Sed0018241 Sechium edule HOM05D003276 ORTHO05D003809 5.0e-10 68.2 136 40.4
SalBow4G2479 Salvia bowleyana HOM05D003276 ORTHO05D003809 6.6e-10 67.8 131 40.5
Psat5g077440 Pisum sativum HOM05D003276 ORTHO05D003809 1.1e-09 67.0 130 36.9
CDE02G0738 Ceratophyllum demersum HOM05D003276 ORTHO05D003809 2.5e-09 65.9 139 41.0
MSTRG.8663 Avicennia marina HOM05D003276 ORTHO05D003809 7.2e-09 64.3 134 39.6
ECA233G4081 Erigeron canadensis HOM05D003276 ORTHO05D003809 7.2e-09 64.3 129 38.8
Eucgr.A01461 Eucalyptus grandis HOM05D003276 ORTHO05D003809 7.2e-09 64.3 132 40.2
Zm00001eb081920 Zea mays HOM05D003276 ORTHO05D003809 7.2e-09 64.3 105 41.9
Sed0011826 Sechium edule HOM05D003276 ORTHO05D003809 1.6e-08 63.2 110 40.9
ECA238G2839 Erigeron canadensis HOM05D003276 ORTHO05D003809 2.1e-08 62.8 127 37.0
Migut.F01036 Erythranthe guttata HOM05D003276 ORTHO05D003809 2.8e-08 62.4 138 36.2
Nn3g19001 Nelumbo nucifera HOM05D003276 ORTHO05D003809 2.8e-08 62.4 130 39.2
Zm00001eb345540 Zea mays HOM05D003276 ORTHO05D003809 3.6e-08 62.0 127 37.0
CDE08G1590 Ceratophyllum demersum HOM05D003276 ORTHO05D003809 1.0e-07 60.5 139 41.7
Hma1.2p1_0612F.1_g189050 Hydrangea macrophylla HOM05D003276 ORTHO05D003809 1.0e-07 60.5 130 34.6
Oeu041316.1 Olea europaea HOM05D003276 ORTHO05D003809 1.0e-07 60.5 132 39.4
Hund11669 Selenicereus undatus HOM05D003276 ORTHO05D003809 1.0e-07 60.5 112 41.1
unitig_92.g28256 Utricularia gibba HOM05D003276 ORTHO05D003809 1.4e-07 60.1 136 35.3
Actinidia06153 Actinidia chinensis HOM05D003276 ORTHO05D003809 3.0e-07 58.9 121 37.2
CiPaw.05G251300 Carya illinoinensis HOM05D003276 ORTHO05D003809 3.0e-07 58.9 106 41.5
C01p24270 Brassica napus HOM05D060717 ORTHO05D031718 4.0e-07 58.5 78 50.0
DCAR_008917 Daucus carota HOM05D003276 ORTHO05D003809 1.2e-06 57.0 108 34.3
BcaC09g50529 Brassica carinata HOM05D003276 ORTHO05D031718 5.7e-06 54.7 71 47.9


User provided reference genes

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