Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p16740 Brassica napus HOM05D009587 ORTHO05D004912 2.0e-59 232.3 117 100.0
BolC3t14094H Brassica oleracea HOM05D009587 ORTHO05D004912 3.7e-58 228.0 117 97.4
A03p14360 Brassica napus HOM05D009587 ORTHO05D004912 2.2e-55 218.8 117 93.2
BraA03t10733Z Brassica rapa HOM05D009587 ORTHO05D004912 2.3e-52 208.8 118 93.2
BcaB01g04338 Brassica carinata HOM05D009587 ORTHO05D004912 1.0e-47 193.4 117 86.3
BcaC01g06332 Brassica carinata HOM05D009587 ORTHO05D004912 5.4e-41 171.0 120 80.0
Sp6g16920 Schrenkiella parvula HOM05D009587 ORTHO05D004912 1.8e-36 156.0 138 65.9
Thhalv10015018m.g Eutrema salsugineum HOM05D009587 ORTHO05D004912 2.6e-35 152.1 129 65.9
Carub.0008s1526 Capsella rubella HOM05D009587 ORTHO05D004912 7.5e-35 150.6 135 66.7
AT5G54970 Arabidopsis thaliana HOM05D009587 ORTHO05D004912 1.1e-33 146.7 127 66.9
AL8G30440 Arabidopsis lyrata HOM05D009587 ORTHO05D004912 1.4e-33 146.4 135 64.4
CARHR268310 Cardamine hirsuta HOM05D009587 ORTHO05D004912 1.1e-30 136.7 132 61.4
Carub.0007s1391 Capsella rubella HOM05D009587 ORTHO05D004912 1.3e-26 123.2 136 58.1
THA.LOC104813425 Tarenaya hassleriana HOM05D009587 ORTHO05D004912 4.6e-24 114.8 112 58.9
Aa31LG3G10880 Aethionema arabicum HOM05D009587 ORTHO05D004912 3.9e-23 111.7 133 51.1
Sp7g24900 Schrenkiella parvula HOM05D009587 ORTHO05D004912 3.3e-22 108.6 122 54.9
CARHR234560 Cardamine hirsuta HOM05D009587 ORTHO05D004912 7.3e-22 107.5 127 55.9
AT4G26960 Arabidopsis thaliana HOM05D009587 ORTHO05D004912 3.6e-21 105.1 121 52.1
THA.LOC104817668 Tarenaya hassleriana HOM05D009587 ORTHO05D004912 6.2e-21 104.4 119 53.8
C08p10050 Brassica napus HOM05D009587 ORTHO05D004912 1.1e-20 103.6 117 53.8
BolC8t48684H Brassica oleracea HOM05D009587 ORTHO05D004912 1.1e-20 103.6 117 53.8
AL7G25880 Arabidopsis lyrata HOM05D009587 ORTHO05D004912 1.4e-20 103.2 105 61.0
BcaC07g38259 Brassica carinata HOM05D009587 ORTHO05D004912 1.4e-20 103.2 117 53.8
A08p20650 Brassica napus HOM05D009587 ORTHO05D004912 1.2e-19 100.1 120 53.3
BraA08t34019Z Brassica rapa HOM05D009587 ORTHO05D004912 1.2e-19 100.1 126 52.4
Aa31LG5G12020 Aethionema arabicum HOM05D009587 ORTHO05D004912 2.2e-18 95.9 123 53.7
BcaB03g12516 Brassica carinata HOM05D009587 ORTHO05D004912 6.4e-18 94.4 119 50.4
Cpa.g.sc12.298 Carica papaya HOM05D007398 ORTHO05D004912 5.4e-17 91.3 118 44.1
Manes.03G130000 Manihot esculenta HOM05D007398 ORTHO05D004912 8.1e-13 77.4 114 45.6
Manes.15G071300 Manihot esculenta HOM05D007398 ORTHO05D004912 3.1e-12 75.5 112 42.0
Duzib213G1052 Durio zibethinus HOM05D007398 ORTHO05D004912 5.8e-11 71.2 89 47.2
Thecc.07G035100 Theobroma cacao HOM05D007398 ORTHO05D004912 9.9e-11 70.5 110 44.5
QL08p033081 Quercus lobata HOM05D007398 ORTHO05D004912 1.1e-09 67.0 126 41.3
Sed0017131 Sechium edule HOM05D007398 ORTHO05D004912 1.4e-09 66.6 125 38.4
CiPaw.03G160000 Carya illinoinensis HOM05D007398 ORTHO05D004912 4.1e-09 65.1 130 36.9
Dinv39711 Davidia involucrata HOM05D007398 ORTHO05D004912 4.1e-09 65.1 109 39.4
Glyma.13G308800 Glycine max HOM05D007398 ORTHO05D004912 4.1e-09 65.1 101 44.6
TAR626G0532 Trochodendron aralioides HOM05D007398 ORTHO05D004912 4.1e-09 65.1 117 38.5
MELO3C018817.2 Cucumis melo HOM05D007398 ORTHO05D004912 9.2e-09 63.9 125 38.4
Gohir.D01G067500 Gossypium hirsutum HOM05D007398 ORTHO05D004912 9.2e-09 63.9 94 43.6
Gorai.002G089400 Gossypium raimondii HOM05D007398 ORTHO05D004912 9.2e-09 63.9 94 43.6
ClCG00G003290 Citrullus lanatus HOM05D007398 ORTHO05D004912 1.2e-08 63.5 122 38.5
ClCG02G001930 Citrullus lanatus HOM05D007398 ORTHO05D004912 1.2e-08 63.5 122 38.5
Gohir.A01G080300 Gossypium hirsutum HOM05D007398 ORTHO05D004912 1.2e-08 63.5 94 43.6
TAR627G0987 Trochodendron aralioides HOM05D007398 ORTHO05D004912 1.2e-08 63.5 98 41.8
CsaV3_7G003580 Cucumis sativus L. HOM05D007398 ORTHO05D004912 1.6e-08 63.2 116 39.7
Sed0017095 Sechium edule HOM05D007398 ORTHO05D004912 2.1e-08 62.8 113 40.7
BcaB01g04337 Brassica carinata HOM05D009587 ORTHO05D004912 2.7e-08 62.4 53 71.7
MBI02_g21879_MAGBIO Magnolia biondii HOM05D007398 ORTHO05D004912 2.7e-08 62.4 90 47.8
Phvul.005G115200 Phaseolus vulgaris HOM05D007398 ORTHO05D004912 2.7e-08 62.4 91 42.9
QL07p015665 Quercus lobata HOM05D007398 ORTHO05D004912 2.7e-08 62.4 112 42.0
Hma1.2p1_0328F.1_g126925 Hydrangea macrophylla HOM05D007398 ORTHO05D004912 4.6e-08 61.6 109 37.6
Hma1.2p1_0328F.1_g126930 Hydrangea macrophylla HOM05D007398 ORTHO05D004912 4.6e-08 61.6 109 37.6
Sed0010410 Sechium edule HOM05D007398 ORTHO05D004912 7.8e-08 60.8 117 41.0
CSS0017183 Camellia sinensis var. sinensis HOM05D007398 ORTHO05D004912 1.0e-07 60.5 102 39.2
Ca_01601_v3 Cicer arietinum L. HOM05D007398 ORTHO05D004912 1.7e-07 59.7 99 43.4
PGR083G1220 Punica granatum HOM05D007398 ORTHO05D004912 1.7e-07 59.7 110 40.9
Potri.006G052300 Populus trichocarpa HOM05D007398 ORTHO05D004912 2.3e-07 59.3 114 35.1
Nn1g03511 Nelumbo nucifera HOM05D007398 ORTHO05D004912 3.0e-07 58.9 117 37.6
TPR.G4189 Trifolium pratense HOM05D007398 ORTHO05D004912 3.0e-07 58.9 117 40.2
VMungo1080G0246 Vigna mungo HOM05D007398 ORTHO05D004912 3.9e-07 58.5 90 42.2
Lalb_Chr24g0393181 Lupinus albus HOM05D007398 ORTHO05D004912 5.1e-07 58.2 80 46.2
TWI75G1275 Tripterygium wilfordii HOM05D007398 ORTHO05D004912 6.6e-07 57.8 106 40.6
CANSAT64G0797 Cannabis sativa HOM05D007398 ORTHO05D004912 1.1e-06 57.0 110 37.3
COL.COLO4_27711 Corchorus olitorius HOM05D007398 ORTHO05D004912 1.1e-06 57.0 102 35.3
Gohir.A04G144600 Gossypium hirsutum HOM05D007398 ORTHO05D004912 1.1e-06 57.0 83 39.8
Gohir.D04G189100 Gossypium hirsutum HOM05D007398 ORTHO05D004912 1.1e-06 57.0 83 39.8
Ciclev10017196m.g Citrus clementina HOM05D007398 ORTHO05D004912 1.5e-06 56.6 112 34.8
Prupe.3G217200 Prunus persica HOM05D007398 ORTHO05D004912 1.5e-06 56.6 104 36.5
Cfa014400 Carpinus fangiana HOM05D007398 ORTHO05D004912 1.9e-06 56.2 131 35.1
Glyma.12G193700 Glycine max HOM05D007398 ORTHO05D004912 2.5e-06 55.8 102 40.2
PSO541G0095 Papaver somniferum HOM05D007398 ORTHO05D004912 2.5e-06 55.8 114 36.0
Psat5g264000 Pisum sativum HOM05D007398 ORTHO05D004912 2.5e-06 55.8 84 44.0
Haze_12865 Corylus avellana HOM05D007398 ORTHO05D004912 3.3e-06 55.5 132 34.8
MD17G1096900 Malus domestica HOM05D007398 ORTHO05D004912 4.3e-06 55.1 106 36.8
TAR629G1636 Trochodendron aralioides HOM05D007398 ORTHO05D004912 4.3e-06 55.1 100 39.0
ClCG02G008700 Citrullus lanatus HOM05D007398 ORTHO05D004912 5.6e-06 54.7 128 34.4
FvH4_6g43180 Fragaria vesca HOM05D007398 ORTHO05D004912 5.6e-06 54.7 95 40.0
Thecc.02G314700 Theobroma cacao HOM05D007398 ORTHO05D004912 5.6e-06 54.7 113 37.2
Cc05_g04620 Coffea canephora HOM05D007398 ORTHO05D004912 9.5e-06 53.9 87 40.2


User provided reference genes

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