Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p16240 Brassica napus HOM05D004836 ORTHO05D005150 0.0e+00 2995.7 1813 100.0
BolC3t14046H Brassica oleracea HOM05D004836 ORTHO05D005150 0.0e+00 2838.1 1808 96.3
A03p13800 Brassica napus HOM05D004836 ORTHO05D005150 0.0e+00 2761.9 1810 92.9
BraA03t10683Z Brassica rapa HOM05D004836 ORTHO05D005150 0.0e+00 2728.4 1879 89.6
Sp6g17700 Schrenkiella parvula HOM05D004836 ORTHO05D005150 0.0e+00 2108.6 1842 74.5
AT5G55820 Arabidopsis thaliana HOM05D004836 ORTHO05D005150 0.0e+00 1805.0 1841 66.1
AL8G31380 Arabidopsis lyrata HOM05D004836 ORTHO05D005150 0.0e+00 1724.9 1896 61.2
Carub.0008s1617 Capsella rubella HOM05D004836 ORTHO05D005150 0.0e+00 1704.5 1833 61.6
CARHR269190 Cardamine hirsuta HOM05D004836 ORTHO05D005150 0.0e+00 1686.8 1925 59.9
Thhalv10012421m.g Eutrema salsugineum HOM05D004836 ORTHO05D005150 0.0e+00 1644.4 1828 63.4
Aa31LG3G11720 Aethionema arabicum HOM05D004836 ORTHO05D005150 0.0e+00 1325.1 2011 50.8
BcaB08g35940 Brassica carinata HOM05D004836 ORTHO05D005150 9.8e-283 978.0 1078 59.3
THA.LOC104811669 Tarenaya hassleriana HOM05D004836 ORTHO05D005150 2.6e-251 873.6 2049 40.1
BcaC01g06394 Brassica carinata HOM05D004836 ORTHO05D005150 1.3e-165 589.0 293 100.0
BcaB08g35941 Brassica carinata HOM05D004836 ORTHO05D005150 1.3e-117 429.5 379 67.5
CiPaw.11G204300 Carya illinoinensis HOM05D004836 ORTHO05D005150 5.3e-63 248.1 2009 26.7
Gohir.A01G091700 Gossypium hirsutum HOM05D004836 ORTHO05D005150 2.6e-57 229.2 735 37.8
Manes.03G141700 Manihot esculenta HOM05D004836 ORTHO05D005150 3.4e-57 228.8 1856 27.7
C02p15810 Brassica napus HOM05D004836 ORTHO05D017167 4.8e-56 224.9 213 63.4
Dinv40862 Davidia involucrata HOM05D004836 ORTHO05D005150 3.1e-55 222.2 675 38.5
QL08p004015 Quercus lobata HOM05D004836 ORTHO05D005150 3.5e-54 218.8 1952 27.8
FAN10G2990 Fragaria x ananassa HOM05D004836 ORTHO05D005150 3.0e-50 205.7 747 31.9
Thecc.07G013200 Theobroma cacao HOM05D004836 ORTHO05D005150 3.0e-50 205.7 1911 26.7
Prupe.7G022200 Prunus persica HOM05D004836 ORTHO05D005150 1.2e-49 203.8 665 37.0
Gorai.002G100500 Gossypium raimondii HOM05D004836 ORTHO05D005150 9.8e-49 200.7 1953 26.6
MD03G1024600 Malus domestica HOM05D004836 ORTHO05D005150 2.2e-48 199.5 1939 26.2
CANSAT35G0529 Cannabis sativa HOM05D004836 ORTHO05D005150 4.9e-48 198.4 678 34.7
MD11G1029700 Malus domestica HOM05D004836 ORTHO05D005150 3.1e-47 195.7 1996 25.2
CANSAT11G1576 Cannabis sativa HOM05D004836 ORTHO05D005150 9.2e-47 194.1 679 35.5
Gohir.D01G061900 Gossypium hirsutum HOM05D004836 ORTHO05D005150 1.2e-46 193.7 1970 26.3
TWI38G0981 Tripterygium wilfordii HOM05D004836 ORTHO05D005150 1.2e-46 193.7 664 38.4
Ciclev10007227m.g Citrus clementina HOM05D004836 ORTHO05D005150 2.0e-46 193.0 460 35.4
Duzib213G0869 Durio zibethinus HOM05D004836 ORTHO05D005150 7.8e-46 191.0 1999 25.7
Atru.chr2.3693 Acer truncatum HOM05D004836 ORTHO05D005150 1.3e-45 190.3 655 31.8
Gohir.D13G135900 Gossypium hirsutum HOM05D004836 ORTHO05D005150 8.6e-45 187.6 707 36.6
Cpa.g.sc12.114 Carica papaya HOM05D004836 ORTHO05D005150 4.3e-44 185.3 613 30.2
Dinv10337 Davidia involucrata HOM05D004836 ORTHO05D005150 1.6e-43 183.3 1885 26.3
Potri.001G368200 Populus trichocarpa HOM05D004836 ORTHO05D005150 4.7e-43 181.8 1868 27.1
RcHm_v2.0_Chr1g0333641 Rosa chinensis HOM05D004836 ORTHO05D005150 1.4e-42 180.3 1894 26.1
Gorai.013G152400 Gossypium raimondii HOM05D004836 ORTHO05D005150 2.3e-42 179.5 1968 26.4
Prupe.5G032900 Prunus persica HOM05D004836 ORTHO05D005150 4.0e-42 178.7 1916 25.2
Actinidia37154 Actinidia chinensis HOM05D004836 ORTHO05D005150 2.6e-41 176.0 678 34.5
ClCG09G021380 Citrullus lanatus HOM05D004836 ORTHO05D005150 4.9e-40 171.8 467 32.3
Gohir.A13G132500 Gossypium hirsutum HOM05D004836 ORTHO05D005150 8.3e-40 171.0 1944 26.2
Haze_09829 Corylus avellana HOM05D004836 ORTHO05D005150 4.1e-39 168.7 1974 25.7
Sed0003689 Sechium edule HOM05D004836 ORTHO05D005150 2.0e-38 166.4 749 33.2
BolC2t07687H Brassica oleracea HOM05D000026 ORTHO05D017167 4.6e-38 165.2 152 61.8
Eucgr.F02046 Eucalyptus grandis HOM05D004836 ORTHO05D005150 3.0e-37 162.5 627 34.4
CSS0029600 Camellia sinensis var. sinensis HOM05D004836 ORTHO05D005150 8.6e-37 161.0 388 35.1
FvH4_7g06090 Fragaria vesca HOM05D004836 ORTHO05D005150 8.6e-37 161.0 2036 25.4
PGSC0003DMG400022276 Solanum tuberosum HOM05D004836 ORTHO05D005150 8.6e-37 161.0 723 32.9
MELO3C024947.2 Cucumis melo HOM05D004836 ORTHO05D005150 1.1e-36 160.6 644 37.0
COL.COLO4_09837 Corchorus olitorius HOM05D004836 ORTHO05D005150 5.6e-36 158.3 1862 24.2
CSS0003147 Camellia sinensis var. sinensis HOM05D004836 ORTHO05D005150 7.3e-36 157.9 389 34.4
Cc05_g14960 Coffea canephora HOM05D004836 ORTHO05D005150 9.5e-36 157.5 720 31.7
Sabra16G0241300 Salix brachista HOM05D004836 ORTHO05D005150 1.2e-35 157.1 2014 25.3
Actinidia05002 Actinidia chinensis HOM05D004836 ORTHO05D005150 1.6e-35 156.8 672 33.8
Manes.15G059500 Manihot esculenta HOM05D004836 ORTHO05D005150 2.1e-35 156.4 649 32.0
CAN.G623.12 Capsicum annuum HOM05D004836 ORTHO05D005150 8.0e-35 154.5 645 33.0
GSVIVG01014692001 Vitis vinifera HOM05D004836 ORTHO05D005150 3.1e-34 152.5 1935 26.3
Nitab4.5_0002736g0020 Nicotiana tabacum HOM05D004836 ORTHO05D005150 4.0e-34 152.1 481 33.5
FAN06G1091 Fragaria x ananassa HOM05D004836 ORTHO05D005150 5.2e-34 151.8 2009 25.1
FAN01G1635 Fragaria x ananassa HOM05D004836 ORTHO05D005150 6.8e-34 151.4 2008 25.3
Oeu014362.2 Olea europaea HOM05D004836 ORTHO05D005150 8.9e-34 151.0 1950 23.7
Nitab4.5_0007415g0020 Nicotiana tabacum HOM05D004836 ORTHO05D005150 1.5e-33 150.2 740 31.6
PGR083G2228 Punica granatum HOM05D004836 ORTHO05D005150 2.6e-33 149.4 1857 25.3
TWI39G0854 Tripterygium wilfordii HOM05D004836 ORTHO05D005150 3.4e-33 149.1 497 38.4
Sopen07g033810 Solanum pennellii HOM05D004836 ORTHO05D005150 1.7e-32 146.7 720 31.8
CsaV3_7G011380 Cucumis sativus L. HOM05D004836 ORTHO05D005150 2.9e-32 146.0 1861 25.1
Solyc07g065600.3 Solanum lycopersicum HOM05D004836 ORTHO05D005150 1.1e-31 144.1 650 32.9
TAR624G0729 Trochodendron aralioides HOM05D004836 ORTHO05D005150 1.6e-30 140.2 670 34.9
Glyma.10G277400 Glycine max HOM05D004836 ORTHO05D005150 4.6e-30 138.7 655 31.0
HanXRQChr03g0074011 Helianthus annuus HOM05D004836 ORTHO05D005150 6.0e-30 138.3 646 31.0
Lj5g0000015 Lotus japonicus HOM05D004836 ORTHO05D005150 1.0e-29 137.5 670 30.6
Phvul.003G265300 Phaseolus vulgaris HOM05D004836 ORTHO05D005150 1.7e-29 136.7 662 32.9
Migut.M01650 Erythranthe guttata HOM05D004836 ORTHO05D005150 6.6e-29 134.8 738 30.9
TAR626G1210 Trochodendron aralioides HOM05D004836 ORTHO05D005150 1.1e-28 134.0 1904 25.7
Phvul.007G023800 Phaseolus vulgaris HOM05D004836 ORTHO05D005150 1.5e-28 133.7 681 34.5
Ca_25650_v3 Cicer arietinum L. HOM05D004836 ORTHO05D005150 1.6e-27 130.2 656 32.8
Glyma.20G112200 Glycine max HOM05D004836 ORTHO05D005150 1.6e-27 130.2 675 31.9
FAN03G2987 Fragaria x ananassa HOM05D004836 ORTHO05D005150 2.3e-26 126.3 1959 24.7
Sed0002835 Sechium edule HOM05D004836 ORTHO05D005150 2.3e-26 126.3 1934 24.0
MBI15_g03895_MAGBIO Magnolia biondii HOM05D004836 ORTHO05D005150 3.4e-25 122.5 431 31.1
SGA_v2.0_scaffold168G38564 Striga asiatica HOM05D004836 ORTHO05D005150 1.7e-24 120.2 674 30.3
MD11G1030200 Malus domestica HOM05D004836 ORTHO05D005150 2.9e-24 119.4 281 35.6
MD00G1168400 Malus domestica HOM05D004836 ORTHO05D005150 6.4e-24 118.2 548 32.7
Lalb_Chr06g0166281 Lupinus albus HOM05D004836 ORTHO05D005150 2.4e-23 116.3 943 27.9
Rhsim06G0230000 Rhododendron simsii HOM05D004836 ORTHO05D005150 3.2e-23 115.9 1910 23.8
VMungo0720G3177 Vigna mungo HOM05D004836 ORTHO05D005150 3.2e-23 115.9 418 33.3
Nn1g03169 Nelumbo nucifera HOM05D004836 ORTHO05D005150 2.1e-22 113.2 406 30.3
Rhsim04G0012500 Rhododendron simsii HOM05D004836 ORTHO05D005150 3.5e-22 112.5 426 30.0
BcaB08g35942 Brassica carinata HOM05D004836 ORTHO05D005150 7.8e-22 111.3 113 55.8
arahy.Tifrunner.gnm1.ann1.LI7RG4 Arachis hypogaea HOM05D004836 ORTHO05D005150 1.3e-21 110.5 1908 26.4
Oeu046935.1 Olea europaea HOM05D004836 ORTHO05D005150 1.3e-21 110.5 1726 22.7
HanXRQChr13g0408421 Helianthus annuus HOM05D004836 ORTHO05D005150 6.6e-21 108.2 632 34.8
Aqoxy4G02292 Aquilegia oxysepala HOM05D004836 ORTHO05D005150 1.6e-19 103.6 413 30.5
Sc03g0011330 Simmondsia chinensis HOM05D004836 ORTHO05D005150 3.6e-19 102.4 425 30.6
Lsat_1_v5_gn_9_90560 Lactuca sativa HOM05D004836 ORTHO05D005150 6.2e-19 101.7 406 31.5
AUR62017108 Chenopodium quinoa HOM05D004836 ORTHO05D005150 1.4e-18 100.5 350 31.4
AUR62036461 Chenopodium quinoa HOM05D004836 ORTHO05D005150 1.4e-18 100.5 350 31.1
Psat6g230520 Pisum sativum HOM05D004836 ORTHO05D005150 2.4e-18 99.8 655 29.9
Hund23108 Selenicereus undatus HOM05D004836 ORTHO05D005150 2.4e-18 99.8 679 31.1
Sc16g0008100 Simmondsia chinensis HOM05D004836 ORTHO05D005150 2.4e-18 99.8 1963 23.8
ECA240G1942 Erigeron canadensis HOM05D004836 ORTHO05D000368 3.1e-18 99.4 635 33.2
Lalb_Chr21g0309081 Lupinus albus HOM05D004836 ORTHO05D005150 4.0e-18 99.0 1891 24.9
Medtr1g111660 Medicago truncatula HOM05D004836 ORTHO05D005150 4.0e-18 99.0 1062 25.1
Sc03g0011420 Simmondsia chinensis HOM05D004836 ORTHO05D005150 4.0e-18 99.0 425 30.4
Hma1.2p1_1109F.1_g258180 Hydrangea macrophylla HOM05D004836 ORTHO05D005150 5.2e-18 98.6 320 31.6
Hund20644 Selenicereus undatus HOM05D004836 ORTHO05D005150 1.5e-17 97.1 82 59.8
Ah.06g181450 Amaranthus hybridus HOM05D004836 ORTHO05D005150 2.6e-17 96.3 717 27.6
TWI39G0173 Tripterygium wilfordii HOM05D004836 ORTHO05D005150 1.3e-16 94.0 92 51.1
arahy.Tifrunner.gnm1.ann1.D5NCPP Arachis hypogaea HOM05D004836 ORTHO05D005150 4.9e-16 92.0 1632 22.7
EL10Ac4g07562 Beta vulgaris HOM05D004836 ORTHO05D005150 1.4e-15 90.5 120 44.2
Peaxi162Scf00139g01321 Petunia axillaris HOM05D004836 ORTHO05D005150 4.1e-15 89.0 1686 23.7
AUR62044127 Chenopodium quinoa HOM05D004836 ORTHO05D005150 5.4e-15 88.6 98 49.0
MD03G1025800 Malus domestica HOM05D004836 ORTHO05D005150 7.8e-14 84.7 88 56.8
Cpa.g.c38368 Carica papaya HOM05D004836 ORTHO05D005150 1.0e-13 84.3 56 67.9
Actinidia30401 Actinidia chinensis HOM05D004836 ORTHO05D005150 6.6e-13 81.6 64 60.9
unitig_22.g5946 Utricularia gibba HOM05D004836 ORTHO05D005150 8.7e-13 81.3 74 50.0
ATR0751G141 Amborella trichopoda HOM05D004836 ORTHO05D005150 3.3e-12 79.3 179 36.3
AUR62006337 Chenopodium quinoa HOM05D004836 ORTHO05D005150 7.3e-12 78.2 151 42.4
CDE04G0223 Ceratophyllum demersum HOM05D000588 ORTHO05D005150 9.6e-12 77.8 142 44.4
vmacro11592 Vaccinium macrocarpon HOM05D004836 ORTHO05D005150 9.6e-12 77.8 322 28.0
SEGI_04158 Sequoiadendron giganteum HOM05D014698 ORTHO05D016532 2.4e-10 73.2 88 47.7
TPR.G26309 Trifolium pratense HOM05D004836 ORTHO05D005150 2.4e-10 73.2 1600 22.5
SGA_v2.0_scaffold171G38861 Striga asiatica HOM05D004836 ORTHO05D005150 1.5e-09 70.5 1925 22.5
TPR.G26295 Trifolium pratense HOM05D004836 ORTHO05D005150 5.8e-09 68.6 111 38.7
PSO675G3612 Papaver somniferum HOM05D004836 ORTHO05D005150 7.6e-09 68.2 257 28.8
ATR0712G030 Amborella trichopoda HOM05D004836 ORTHO05D005150 9.9e-09 67.8 110 38.2
HanXRQChr03g0074021 Helianthus annuus HOM05D004836 ORTHO05D005150 9.9e-09 67.8 58 51.7
RhsimUnG0156400 Rhododendron simsii HOM05D000074 ORTHO05D001262 9.9e-09 67.8 54 59.3
PSO541G5284 Papaver somniferum HOM05D004836 ORTHO05D005150 1.3e-08 67.4 257 28.8
C02p15800 Brassica napus HOM05D000026 ORTHO05D017167 2.9e-08 66.2 80 46.2
Pp3c1_42830 Physcomitrium patens HOM05D014698 ORTHO05D016532 2.9e-08 66.2 74 54.1
arahy.Tifrunner.gnm1.ann1.TB163P Arachis hypogaea HOM05D004836 ORTHO05D005150 3.8e-08 65.9 381 26.0
Lj1A890T52 Lonicera japonica HOM05D004836 ORTHO05D005150 6.4e-08 65.1 350 25.4
SEGI_26437 Sequoiadendron giganteum HOM05D014698 ORTHO05D016532 6.4e-08 65.1 208 32.2
CDE02G2584 Ceratophyllum demersum HOM05D004836 ORTHO05D005150 1.1e-07 64.3 59 61.0
Actinidia30399 Actinidia chinensis HOM05D004836 ORTHO05D005150 1.9e-07 63.5 102 38.2
DCAR_013235 Daucus carota HOM05D004836 ORTHO05D005150 2.4e-07 63.2 1908 23.2
Os09g0477700 Oryza sativa ssp. japonica HOM05D028105 ORTHO05D005150 9.3e-07 61.2 60 55.0


User provided reference genes

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