Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p15980 Brassica napus HOM05D003788 ORTHO05D004633 0.0e+00 1504.2 761 100.0
BcaC01g06410 Brassica carinata HOM05D003788 ORTHO05D004633 0.0e+00 1437.9 764 96.5
BolC3t14026H Brassica oleracea HOM05D003788 ORTHO05D004633 0.0e+00 1417.1 764 95.5
A03p13630 Brassica napus HOM05D003788 ORTHO05D004633 0.0e+00 1253.0 774 86.4
BraA03t10667Z Brassica rapa HOM05D003788 ORTHO05D004633 0.0e+00 1231.5 774 85.5
BcaB01g04387 Brassica carinata HOM05D003788 ORTHO05D004633 0.0e+00 1160.6 772 82.4
Sp6g18100 Schrenkiella parvula HOM05D003788 ORTHO05D004633 3.4e-277 958.4 826 67.6
Thhalv10012702m.g Eutrema salsugineum HOM05D003788 ORTHO05D004633 4.7e-271 937.9 827 68.1
AL8G31880 Arabidopsis lyrata HOM05D003788 ORTHO05D004633 3.2e-251 872.1 830 63.9
AT5G56250 Arabidopsis thaliana HOM05D003788 ORTHO05D004633 4.2e-235 818.5 824 62.3
CARHR269650 Cardamine hirsuta HOM05D003788 ORTHO05D004633 7.6e-229 797.7 829 60.8
Carub.0008s1657 Capsella rubella HOM05D003788 ORTHO05D004633 1.3e-228 797.0 825 60.1
BcaB05g22252 Brassica carinata HOM05D003788 ORTHO05D004633 2.1e-218 763.1 762 62.5
A02p09250 Brassica napus HOM05D003788 ORTHO05D004633 4.8e-215 751.9 795 60.3
C02p15400 Brassica napus HOM05D003788 ORTHO05D004633 7.7e-205 718.0 753 58.8
BolC2t07655H Brassica oleracea HOM05D003788 ORTHO05D004633 7.9e-202 708.0 759 58.2
BcaC03g14234 Brassica carinata HOM05D003788 ORTHO05D004633 5.0e-196 688.7 759 57.6
C09p47500 Brassica napus HOM05D003788 ORTHO05D004633 9.7e-184 647.9 787 53.7
BcaC04g20115 Brassica carinata HOM05D003788 ORTHO05D004633 3.1e-153 546.6 713 52.2
BolC9t57606H Brassica oleracea HOM05D003788 ORTHO05D004633 5.0e-148 529.3 712 51.3
A10p13510 Brassica napus HOM05D003788 ORTHO05D004633 8.1e-130 468.8 714 48.2
AL8G31870 Arabidopsis lyrata HOM05D003788 ORTHO05D004633 9.6e-107 392.1 990 38.6
Thhalv10012573m.g Eutrema salsugineum HOM05D003788 ORTHO05D004633 9.6e-107 392.1 977 38.8
Aa31LG3G12140 Aethionema arabicum HOM05D003788 ORTHO05D004633 2.1e-106 391.0 937 37.7
THA.LOC104811704 Tarenaya hassleriana HOM05D003788 ORTHO05D004633 3.1e-105 387.1 960 36.6
AL191U10030 Arabidopsis lyrata HOM05D003788 ORTHO05D004633 2.6e-104 384.0 979 37.7
Carub.0008s1656 Capsella rubella HOM05D003788 ORTHO05D004633 4.9e-103 379.8 994 35.5
AT5G56240 Arabidopsis thaliana HOM05D003788 ORTHO05D004633 5.0e-95 353.2 986 36.9
C02p15420 Brassica napus HOM05D003788 ORTHO05D004633 1.1e-94 352.1 956 35.1
BolC2t07656H Brassica oleracea HOM05D003788 ORTHO05D004633 1.1e-94 352.1 956 35.1
CARHR269640 Cardamine hirsuta HOM05D003788 ORTHO05D004633 5.5e-94 349.7 852 39.8
C09p47480 Brassica napus HOM05D003788 ORTHO05D004633 4.8e-90 336.7 939 35.4
BcaC04g20117 Brassica carinata HOM05D003788 ORTHO05D004633 1.2e-88 332.0 932 35.1
BolC9t57603H Brassica oleracea HOM05D003788 ORTHO05D004633 5.9e-88 329.7 942 34.9
BcaB05g22251 Brassica carinata HOM05D003788 ORTHO05D004633 1.3e-87 328.6 1003 34.5
BolC3t14027H Brassica oleracea HOM05D003788 ORTHO05D004633 1.6e-85 321.6 913 35.3
BcaC01g06409 Brassica carinata HOM05D003788 ORTHO05D004633 1.4e-84 318.5 933 34.8
C03p15990 Brassica napus HOM05D003788 ORTHO05D004633 5.1e-84 316.6 923 36.0
BcaC03g14236 Brassica carinata HOM05D003788 ORTHO05D004633 8.8e-84 315.8 828 35.6
A10p13490 Brassica napus HOM05D003788 ORTHO05D004633 8.8e-84 315.8 950 34.6
BraA10t43453Z Brassica rapa HOM05D003788 ORTHO05D004633 8.8e-84 315.8 950 34.6
BcaB01g04386 Brassica carinata HOM05D003788 ORTHO05D004633 6.3e-82 309.7 930 35.8
BraA02t05991Z Brassica rapa HOM05D003788 ORTHO05D004633 1.4e-81 308.5 984 33.4
A02p09290 Brassica napus HOM05D003788 ORTHO05D004633 1.1e-78 298.9 973 33.4
BraA03t10668Z Brassica rapa HOM05D003788 ORTHO05D004633 1.9e-78 298.1 941 34.5
A03p13640 Brassica napus HOM05D003788 ORTHO05D004633 1.0e-76 292.4 960 34.0
Sp6g18090 Schrenkiella parvula HOM05D003788 ORTHO05D004633 4.4e-75 287.0 836 36.1
CARHR218680 Cardamine hirsuta HOM05D003788 ORTHO05D004633 6.8e-60 236.5 196 66.8
BraA02t05990Z Brassica rapa HOM05D003788 ORTHO05D004633 1.6e-53 215.3 189 67.7
GSVIVG01014849001 Vitis vinifera HOM05D003788 ORTHO05D004633 1.3e-47 195.7 932 27.6
Gohir.D08G036500 Gossypium hirsutum HOM05D003788 ORTHO05D004633 9.5e-46 189.5 326 40.5
Migut.H01707 Erythranthe guttata HOM05D003788 ORTHO05D004633 3.6e-45 187.6 725 30.3
Gohir.A08G026000 Gossypium hirsutum HOM05D003788 ORTHO05D004633 4.7e-45 187.2 332 39.8
Cfa016964 Carpinus fangiana HOM05D003788 ORTHO05D004633 3.0e-44 184.5 351 38.2
Gorai.004G034500 Gossypium raimondii HOM05D003788 ORTHO05D004633 4.0e-44 184.1 326 39.3
HanXRQChr03g0079411 Helianthus annuus HOM05D003788 ORTHO05D004633 7.5e-43 179.9 835 27.1
THA.LOC104822683 Tarenaya hassleriana HOM05D003788 ORTHO05D004633 1.7e-42 178.7 959 26.8
TWI14G1222 Tripterygium wilfordii HOM05D003788 ORTHO05D004633 3.7e-42 177.6 417 35.0
Haze_09919 Corylus avellana HOM05D003788 ORTHO05D004633 2.4e-41 174.9 352 37.8
TWI39G0992 Tripterygium wilfordii HOM05D003788 ORTHO05D004633 4.1e-41 174.1 421 33.7
Potri.001G472400 Populus trichocarpa HOM05D003788 ORTHO05D004633 4.6e-40 170.6 384 36.7
Rhsim06G0235500 Rhododendron simsii HOM05D003788 ORTHO05D004633 5.9e-40 170.2 350 37.1
Manes.05G204500 Manihot esculenta HOM05D003788 ORTHO05D004633 7.8e-40 169.9 404 33.7
Ciclev10007254m.g Citrus clementina HOM05D003788 ORTHO05D004633 1.0e-39 169.5 366 35.8
CiPaw.11G210900 Carya illinoinensis HOM05D003788 ORTHO05D004633 1.3e-39 169.1 413 34.9
Duzib268G1743 Durio zibethinus HOM05D003788 ORTHO05D004633 1.3e-39 169.1 429 33.3
COL.COLO4_07793 Corchorus olitorius HOM05D003788 ORTHO05D004633 1.7e-39 168.7 373 34.9
Thecc.07G001100 Theobroma cacao HOM05D003788 ORTHO05D004633 2.3e-39 168.3 429 32.4
Gohir.D13G131700 Gossypium hirsutum HOM05D003788 ORTHO05D004633 3.0e-39 167.9 377 36.1
MD03G1043400 Malus domestica HOM05D003788 ORTHO05D004633 3.0e-39 167.9 389 37.3
PGR031G1033 Punica granatum HOM05D003788 ORTHO05D004633 3.9e-39 167.5 389 35.7
Sed0023936 Sechium edule HOM05D003788 ORTHO05D004633 5.0e-39 167.2 381 35.7
Dinv40920 Davidia involucrata HOM05D003788 ORTHO05D004633 8.6e-39 166.4 332 38.3
Duzib213G0477 Durio zibethinus HOM05D003788 ORTHO05D004633 1.1e-38 166.0 436 33.0
Gorai.013G147700 Gossypium raimondii HOM05D003788 ORTHO05D004633 1.1e-38 166.0 377 36.9
QL08p000460 Quercus lobata HOM05D003788 ORTHO05D004633 1.1e-38 166.0 433 35.6
CsaV3_3G003820 Cucumis sativus L. HOM05D003788 ORTHO05D004633 1.5e-38 165.6 367 36.8
FAN25G3203 Fragaria x ananassa HOM05D003788 ORTHO05D004633 1.9e-38 165.2 406 36.2
Gohir.A13G128300 Gossypium hirsutum HOM05D003788 ORTHO05D004633 1.9e-38 165.2 377 35.3
MD11G1046500 Malus domestica HOM05D003788 ORTHO05D004633 3.3e-38 164.5 467 33.4
Sabra16G0320700 Salix brachista HOM05D003788 ORTHO05D004633 5.6e-38 163.7 433 33.5
Manes.01G007100 Manihot esculenta HOM05D003788 ORTHO05D004633 7.3e-38 163.3 580 29.7
ClCG00G001230 Citrullus lanatus HOM05D003788 ORTHO05D004633 9.5e-38 162.9 401 33.9
ClCG10G003960 Citrullus lanatus HOM05D003788 ORTHO05D004633 9.5e-38 162.9 401 33.9
FvH4_3g41530 Fragaria vesca HOM05D003788 ORTHO05D004633 9.5e-38 162.9 410 35.4
FAN11G0056 Fragaria x ananassa HOM05D003788 ORTHO05D004633 9.5e-38 162.9 410 35.4
HanXRQChr17g0546861 Helianthus annuus HOM05D003788 ORTHO05D004633 1.6e-37 162.2 885 26.8
THA.LOC104810306 Tarenaya hassleriana HOM05D003788 ORTHO05D004633 1.6e-37 162.2 460 30.7
ClCG10G003840 Citrullus lanatus HOM05D003788 ORTHO05D004633 2.1e-37 161.8 403 34.2
FAN21G2445 Fragaria x ananassa HOM05D003788 ORTHO05D004633 2.1e-37 161.8 410 35.1
MELO3C014063.2 Cucumis melo HOM05D003788 ORTHO05D004633 2.8e-37 161.4 364 35.2
FAN16G1134 Fragaria x ananassa HOM05D003788 ORTHO05D004633 2.8e-37 161.4 410 35.4
Atru.chr2.3902 Acer truncatum HOM05D003788 ORTHO05D004633 6.2e-37 160.2 389 34.4
TWI38G0822 Tripterygium wilfordii HOM05D003788 ORTHO05D004633 1.0e-36 159.5 412 35.0
Os04g0471400 Oryza sativa ssp. japonica HOM05D003788 ORTHO05D004633 3.1e-36 157.9 559 29.7
Lsat_1_v5_gn_7_115701 Lactuca sativa HOM05D003788 ORTHO05D004633 4.0e-36 157.5 901 26.4
RcHm_v2.0_Chr5g0074531 Rosa chinensis HOM05D003788 ORTHO05D004633 4.0e-36 157.5 399 34.6
Eucgr.F01984 Eucalyptus grandis HOM05D003788 ORTHO05D004633 5.2e-36 157.1 442 32.8
Zm00001eb424700 Zea mays HOM05D003788 ORTHO05D004633 5.2e-36 157.1 372 34.4
CSS0001498 Camellia sinensis var. sinensis HOM05D003788 ORTHO05D004633 8.9e-36 156.4 397 33.5
CSS0046183 Camellia sinensis var. sinensis HOM05D003788 ORTHO05D004633 8.9e-36 156.4 397 33.5
Cc05_g15760 Coffea canephora HOM05D003788 ORTHO05D004633 8.9e-36 156.4 428 32.5
Prupe.6G035800 Prunus persica HOM05D003788 ORTHO05D004633 8.9e-36 156.4 400 35.0
Sc03g0011790 Simmondsia chinensis HOM05D003788 ORTHO05D004633 1.5e-35 155.6 344 34.9
CSS0022631 Camellia sinensis var. sinensis HOM05D003788 ORTHO05D004633 2.0e-35 155.2 430 33.3
Potri.011G169100 Populus trichocarpa HOM05D003788 ORTHO05D004633 3.4e-35 154.5 434 33.6
ECA236G3073 Erigeron canadensis HOM05D003788 ORTHO05D004633 9.8e-35 152.9 891 26.7
Oeu052883.2 Olea europaea HOM05D003788 ORTHO05D004633 9.8e-35 152.9 413 33.7
SalBow8G5584 Salvia bowleyana HOM05D003788 ORTHO05D004633 9.8e-35 152.9 340 36.8
Lj1A901G37 Lonicera japonica HOM05D003788 ORTHO05D004633 1.3e-34 152.5 424 32.8
Migut.M01579 Erythranthe guttata HOM05D003788 ORTHO05D004633 4.9e-34 150.6 422 33.9
Nitab4.5_0001732g0050 Nicotiana tabacum HOM05D003788 ORTHO05D004633 4.9e-34 150.6 329 36.5
MSTRG.16130 Avicennia marina HOM05D003788 ORTHO05D004633 6.4e-34 150.2 339 36.3
Zm00001eb079970 Zea mays HOM05D003788 ORTHO05D004633 6.4e-34 150.2 375 33.9
Lsat_1_v5_gn_9_88661 Lactuca sativa HOM05D003788 ORTHO05D004633 1.9e-33 148.7 778 27.1
DCAR_013754 Daucus carota HOM05D003788 ORTHO05D004633 2.4e-33 148.3 356 36.2
HanXRQChr11g0346921 Helianthus annuus HOM05D003788 ORTHO05D004633 2.4e-33 148.3 342 34.8
MSTRG.7044 Avicennia marina HOM05D003788 ORTHO05D004633 3.2e-33 147.9 351 34.2
Nitab4.5_0000152g0020 Nicotiana tabacum HOM05D003788 ORTHO05D004633 3.2e-33 147.9 376 34.0
Sed0020897 Sechium edule HOM05D003788 ORTHO05D004633 3.2e-33 147.9 403 33.0
Sabra11G0137700 Salix brachista HOM05D003788 ORTHO05D004633 4.1e-33 147.5 496 31.0
PGSC0003DMG400022144 Solanum tuberosum HOM05D003788 ORTHO05D004633 5.4e-33 147.1 377 35.5
Hma1.2p1_0321F.1_g124360 Hydrangea macrophylla HOM05D003788 ORTHO05D004633 7.0e-33 146.7 335 36.1
Nn1g07620 Nelumbo nucifera HOM05D003788 ORTHO05D004633 1.6e-32 145.6 415 32.5
Oeu015274.1 Olea europaea HOM05D003788 ORTHO05D004633 4.6e-32 144.1 410 33.7
Solyc07g066200.4 Solanum lycopersicum HOM05D003788 ORTHO05D004633 4.6e-32 144.1 377 35.5
unitig_37.g12213 Utricularia gibba HOM05D003788 ORTHO05D004633 4.6e-32 144.1 324 34.9
Aqoxy4G02274 Aquilegia oxysepala HOM05D003788 ORTHO05D004633 6.0e-32 143.7 424 31.8
Sopen07g034380 Solanum pennellii HOM05D003788 ORTHO05D004633 1.0e-31 142.9 376 35.4
Dinv19640 Davidia involucrata HOM05D003788 ORTHO05D004633 1.3e-31 142.5 460 30.2
HPP92_015789 Vanilla planifolia HOM05D003788 ORTHO05D004633 1.7e-31 142.1 320 34.1
SGA_v2.0_scaffold11G05962 Striga asiatica HOM05D003788 ORTHO05D004633 5.0e-31 140.6 788 27.0
AUR62017148 Chenopodium quinoa HOM05D003788 ORTHO05D004633 6.6e-31 140.2 365 31.5
Ah.04g166650 Amaranthus hybridus HOM05D003788 ORTHO05D004633 1.5e-30 139.0 709 28.1
AUR62035659 Chenopodium quinoa HOM05D003788 ORTHO05D004633 3.3e-30 137.9 365 31.2
vmacro11644 Vaccinium macrocarpon HOM05D003788 ORTHO05D004633 3.3e-30 137.9 399 33.1
ECA240G4117 Erigeron canadensis HOM05D003788 ORTHO05D004633 7.3e-30 136.7 776 26.8
unitig_0.g982 Utricularia gibba HOM05D003788 ORTHO05D004633 2.8e-29 134.8 440 30.9
Lj8C184G1 Lonicera japonica HOM05D003788 ORTHO05D004633 3.6e-29 134.4 381 33.6
Peaxi162Scf00232g00078 Petunia axillaris HOM05D003788 ORTHO05D004633 4.7e-29 134.0 805 26.7
TAR626G0610 Trochodendron aralioides HOM05D003788 ORTHO05D004633 4.7e-29 134.0 423 29.1
MBI14_g10253_MAGBIO Magnolia biondii HOM05D003788 ORTHO05D004633 6.2e-29 133.7 444 29.7
TAR629G3040 Trochodendron aralioides HOM05D003788 ORTHO05D004633 1.8e-28 132.1 401 31.9
MBI15_g35998_MAGBIO Magnolia biondii HOM05D003788 ORTHO05D004633 3.1e-28 131.3 411 29.7
SGA_v2.0_scaffold7G03552 Striga asiatica HOM05D003788 ORTHO05D004633 3.1e-28 131.3 743 26.9
CANSAT11G0655 Cannabis sativa HOM05D003788 ORTHO05D004633 6.8e-28 130.2 467 29.1
unitig_46.g18528 Utricularia gibba HOM05D003788 ORTHO05D004633 2.0e-27 128.6 319 34.8
CiPaw.12G143000 Carya illinoinensis HOM05D003788 ORTHO05D004633 2.6e-27 128.3 140 54.3
Actinidia30346 Actinidia chinensis HOM05D003788 ORTHO05D004633 4.4e-27 127.5 291 38.1
CDE11G0275 Ceratophyllum demersum HOM05D003788 ORTHO05D004633 5.8e-27 127.1 376 33.0
Cpa.g.sc12.61 Carica papaya HOM05D003788 ORTHO05D004633 7.5e-27 126.7 277 36.1
HPP92_022807 Vanilla planifolia HOM05D003788 ORTHO05D004633 1.3e-26 125.9 351 32.2
PSO782G4685 Papaver somniferum HOM05D003788 ORTHO05D004633 4.9e-26 124.0 430 29.5
Actinidia31533 Actinidia chinensis HOM05D003788 ORTHO05D004633 6.4e-26 123.6 562 28.5
ATR0751G208 Amborella trichopoda HOM05D003788 ORTHO05D004633 9.2e-25 119.8 332 32.5
EL10Ac4g07522 Beta vulgaris HOM05D003788 ORTHO05D004633 1.0e-23 116.3 472 28.0
Duzib170G0482 Durio zibethinus HOM05D003788 ORTHO05D004633 1.3e-23 115.9 396 29.3
TAR627G0146 Trochodendron aralioides HOM05D003788 ORTHO05D004633 1.9e-22 112.1 500 27.0
MSTRG.13048 Avicennia marina HOM05D003788 ORTHO05D004633 5.6e-22 110.5 130 51.5
CDE06G0258 Ceratophyllum demersum HOM05D003788 ORTHO05D004633 8.9e-20 103.2 258 34.1
Hund23029 Selenicereus undatus HOM05D003788 ORTHO05D004633 2.0e-19 102.1 462 28.4
HPP92_007487 Vanilla planifolia HOM05D003788 ORTHO05D004633 1.5e-11 75.9 77 50.6
CDE05G2211 Ceratophyllum demersum HOM05D003788 ORTHO05D004633 1.1e-09 69.7 436 27.5
Aqoxy2G04009 Aquilegia oxysepala HOM05D003788 ORTHO05D010879 3.2e-09 68.2 209 30.1
TAR365G1027 Trochodendron aralioides HOM05D010496 ORTHO05D010879 4.2e-09 67.8 221 29.0
Nn1g09760 Nelumbo nucifera HOM05D003788 ORTHO05D010879 7.1e-09 67.0 236 26.3
SEGI_04749 Sequoiadendron giganteum HOM05D003788 ORTHO05D004633 2.1e-08 65.5 76 48.7
CiPaw.01G109800 Carya illinoinensis HOM05D010496 ORTHO05D010879 2.7e-08 65.1 296 27.0
Cc05_g15750 Coffea canephora HOM05D003788 ORTHO05D004633 3.5e-08 64.7 93 41.9
TPR.G10391 Trifolium pratense HOM05D011141 ORTHO05D010879 1.0e-07 63.2 221 27.1
Glyma.10G293200 Glycine max HOM05D011141 ORTHO05D010879 1.3e-07 62.8 227 26.9
Actinidia30347 Actinidia chinensis HOM05D003788 ORTHO05D004633 3.9e-07 61.2 504 22.8
Phvul.007G007000 Phaseolus vulgaris HOM05D011141 ORTHO05D010879 5.1e-07 60.8 210 29.5
QL06p027780 Quercus lobata HOM05D010496 ORTHO05D010879 8.7e-07 60.1 236 26.7
MBI14_g12743_MAGBIO Magnolia biondii HOM05D003788 ORTHO05D004633 1.5e-06 59.3 174 32.8
Mapoly0011s0209 Marchantia polymorpha HOM05D003788 ORTHO05D253274 3.3e-06 58.2 138 28.3
Glyma.20G243300 Glycine max HOM05D011141 ORTHO05D010879 5.6e-06 57.4 268 26.9
TAR365G0164 Trochodendron aralioides HOM05D003788 ORTHO05D010879 9.6e-06 56.6 344 24.4


User provided reference genes

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