Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g06454 Brassica carinata HOM05D007210 ORTHO05D006152 2.5e-121 438.7 216 100.0
C03p15300 Brassica napus HOM05D007210 ORTHO05D006152 2.5e-121 438.7 216 100.0
BcaNung05243 Brassica carinata HOM05D007210 ORTHO05D006152 1.1e-113 413.3 216 96.3
BraA03t10618Z Brassica rapa HOM05D007210 ORTHO05D006152 5.9e-110 401.0 204 96.6
BcaB01g04427 Brassica carinata HOM05D007210 ORTHO05D006152 5.0e-109 397.9 216 90.3
A03p13080 Brassica napus HOM05D007210 ORTHO05D006152 1.0e-106 390.2 217 88.0
BolC3t13970H Brassica oleracea HOM05D007210 ORTHO05D006152 9.7e-105 383.6 217 86.2
BraA03t10619Z Brassica rapa HOM05D007210 ORTHO05D006152 7.7e-102 374.0 217 85.3
A03p13090 Brassica napus HOM05D007210 ORTHO05D006152 6.5e-93 344.4 210 83.3
BolC3t13971H Brassica oleracea HOM05D007210 ORTHO05D006152 3.0e-90 335.5 210 80.5
BcaC01g06453 Brassica carinata HOM05D007210 ORTHO05D006152 2.6e-89 332.4 210 80.5
BcaNung05242 Brassica carinata HOM05D007210 ORTHO05D006152 2.6e-89 332.4 210 80.5
BcaB01g04428 Brassica carinata HOM05D007210 ORTHO05D006152 8.0e-83 310.8 184 85.3
C03p15310 Brassica napus HOM05D007210 ORTHO05D006152 9.2e-79 297.4 216 73.6
BcaC01g06452 Brassica carinata HOM05D007210 ORTHO05D006152 6.6e-77 291.2 175 82.3
BolC3t13972H Brassica oleracea HOM05D007210 ORTHO05D006152 1.3e-61 240.4 151 81.5
A10p14180 Brassica napus HOM05D007210 ORTHO05D006152 6.2e-51 204.9 217 55.8
A10p14200 Brassica napus HOM05D007210 ORTHO05D006152 2.3e-50 203.0 211 52.6
BraA10t43513Z Brassica rapa HOM05D007210 ORTHO05D006152 2.3e-50 203.0 211 52.6
CARHR270660 Cardamine hirsuta HOM05D007210 ORTHO05D006152 2.3e-50 203.0 173 60.1
C09p48590 Brassica napus HOM05D007210 ORTHO05D006152 5.2e-50 201.8 207 55.1
Carub.0008s1740 Capsella rubella HOM05D007210 ORTHO05D006152 1.9e-47 193.4 195 54.9
BcaB08g36043 Brassica carinata HOM05D007210 ORTHO05D006152 2.3e-45 186.4 192 55.7
BcaC01g06451 Brassica carinata HOM05D007210 ORTHO05D006152 3.9e-45 185.7 179 58.1
BcaB08g36040 Brassica carinata HOM05D007210 ORTHO05D006152 8.1e-43 177.9 208 50.5
AL8G32780 Arabidopsis lyrata HOM05D007210 ORTHO05D006152 1.5e-41 173.7 196 52.0
BraA10t43511Z Brassica rapa HOM05D007210 ORTHO05D006152 7.6e-41 171.4 173 57.2
A10p14190 Brassica napus HOM05D007210 ORTHO05D006152 9.9e-41 171.0 206 48.5
BraA10t43512Z Brassica rapa HOM05D007210 ORTHO05D006152 6.6e-37 158.3 200 48.5
BcaC04g20042 Brassica carinata HOM05D007210 ORTHO05D019922 1.5e-36 157.1 152 55.3
BcaB08g36045 Brassica carinata HOM05D007210 ORTHO05D006152 3.8e-32 142.5 163 50.3
C03p15280 Brassica napus HOM05D008242 ORTHO05D010974 1.5e-28 130.6 121 55.4
BolC9t57696H Brassica oleracea HOM05D007210 ORTHO05D006152 3.3e-28 129.4 123 56.1
AL2G12250 Arabidopsis lyrata HOM05D007210 ORTHO05D006152 4.2e-23 112.5 186 39.8
Carub.0002s0167 Capsella rubella HOM05D007210 ORTHO05D006152 9.3e-23 111.3 153 38.6
Carub.0002s0166 Capsella rubella HOM05D007210 ORTHO05D006152 4.6e-22 109.0 153 41.2
AL2G12220 Arabidopsis lyrata HOM05D007210 ORTHO05D006152 1.0e-21 107.8 143 39.9
AL2G12230 Arabidopsis lyrata HOM05D007210 ORTHO05D006152 1.8e-21 107.1 149 38.3
Carub.0002s0168 Capsella rubella HOM05D007210 ORTHO05D006152 3.9e-21 105.9 167 35.3
AL2G12260 Arabidopsis lyrata HOM05D007210 ORTHO05D006152 5.1e-21 105.5 148 39.2
AL52U10010 Arabidopsis lyrata HOM05D007210 ORTHO05D006152 1.1e-20 104.4 117 50.4
BcaB07g31384 Brassica carinata HOM05D007210 ORTHO05D006152 1.9e-20 103.6 156 40.4
BcaB07g31387 Brassica carinata HOM05D007210 ORTHO05D006152 1.9e-20 103.6 154 37.7
A09p15630 Brassica napus HOM05D007210 ORTHO05D006152 2.5e-20 103.2 151 39.1
BraA09t37203Z Brassica rapa HOM05D007210 ORTHO05D006152 2.5e-20 103.2 151 39.1
Carub.0002s0169 Capsella rubella HOM05D007210 ORTHO05D006152 2.5e-20 103.2 155 38.7
CARHR284440 Cardamine hirsuta HOM05D007210 ORTHO05D006152 2.5e-20 103.2 161 39.1
CARHR048290 Cardamine hirsuta HOM05D007210 ORTHO05D006152 5.6e-20 102.1 152 38.8
Thhalv10023855m.g Eutrema salsugineum HOM05D007210 ORTHO05D006152 5.6e-20 102.1 153 38.6
Carub.0002s0174 Capsella rubella HOM05D007210 ORTHO05D006152 9.6e-20 101.3 153 37.9
AT1G63205 Arabidopsis thaliana HOM05D007210 ORTHO05D006152 1.6e-19 100.5 190 37.4
Thhalv10023669m.g Eutrema salsugineum HOM05D007210 ORTHO05D006152 3.7e-19 99.4 139 41.7
BcaC04g22476 Brassica carinata HOM05D007210 ORTHO05D006152 8.1e-19 98.2 158 37.3
BolC9t54788H Brassica oleracea HOM05D007210 ORTHO05D006152 8.1e-19 98.2 158 37.3
AT2G37435 Arabidopsis thaliana HOM05D007210 ORTHO05D006152 1.4e-18 97.4 142 40.8
Carub.0002s0170 Capsella rubella HOM05D007210 ORTHO05D006152 1.4e-18 97.4 142 37.3
AT1G63206 Arabidopsis thaliana HOM05D007210 ORTHO05D006152 4.0e-18 95.9 152 36.8
AL2G12300 Arabidopsis lyrata HOM05D007210 ORTHO05D006152 5.3e-18 95.5 143 37.8
AT1G63190 Arabidopsis thaliana HOM05D007210 ORTHO05D006152 6.9e-18 95.1 142 36.6
Sp2g01360 Schrenkiella parvula HOM05D007210 ORTHO05D006152 9.0e-18 94.7 159 35.8
AL2G12320 Arabidopsis lyrata HOM05D007210 ORTHO05D006152 1.5e-17 94.0 153 35.3
BraA05t19960Z Brassica rapa HOM05D007210 ORTHO05D006152 1.5e-17 94.0 141 35.5
Carub.0002s0171 Capsella rubella HOM05D007210 ORTHO05D006152 2.0e-17 93.6 157 33.8
A09p13520 Brassica napus HOM05D007210 ORTHO05D006152 3.4e-17 92.8 154 36.4
C03p93270 Brassica napus HOM05D007210 ORTHO05D006152 4.5e-17 92.4 138 37.7
BolC3t21625H Brassica oleracea HOM05D007210 ORTHO05D006152 4.5e-17 92.4 138 37.7
A05p10190 Brassica napus HOM05D007210 ORTHO05D006152 5.8e-17 92.0 159 34.0
Sp2g04770 Schrenkiella parvula HOM05D007210 ORTHO05D006152 1.3e-16 90.9 116 43.1
A09p15620 Brassica napus HOM05D007210 ORTHO05D006152 1.7e-16 90.5 158 36.7
BraA09t37202Z Brassica rapa HOM05D007210 ORTHO05D006152 1.7e-16 90.5 158 36.7
BraA09t37003Z Brassica rapa HOM05D007210 ORTHO05D006152 2.2e-16 90.1 154 35.1
AL2G12280 Arabidopsis lyrata HOM05D007210 ORTHO05D006152 2.9e-16 89.7 122 40.2
C09p48560 Brassica napus HOM05D007210 ORTHO05D006152 2.9e-16 89.7 109 51.4
BcaC07g41054 Brassica carinata HOM05D007210 ORTHO05D006152 6.5e-16 88.6 151 34.4
AT1G63200 Arabidopsis thaliana HOM05D007210 ORTHO05D006152 1.4e-15 87.4 157 35.7
BraA08t32080Z Brassica rapa HOM05D007210 ORTHO05D006152 1.4e-15 87.4 138 36.2
Carub.0004s1936 Capsella rubella HOM05D007210 ORTHO05D006152 1.4e-15 87.4 156 35.9
AL2G12200 Arabidopsis lyrata HOM05D007210 ORTHO05D006152 1.9e-15 87.0 93 45.2
BcaB01g02146 Brassica carinata HOM05D007210 ORTHO05D006152 4.2e-15 85.9 148 35.8
BcaC02g10394 Brassica carinata HOM05D007210 ORTHO05D006152 4.2e-15 85.9 144 34.7
AL2G12270 Arabidopsis lyrata HOM05D007210 ORTHO05D006152 7.1e-15 85.1 157 35.7
C05p03140 Brassica napus HOM05D007210 ORTHO05D006152 7.1e-15 85.1 155 38.1
AL4G33850 Arabidopsis lyrata HOM05D007210 ORTHO05D006152 1.2e-14 84.3 161 35.4
Carub.0004s1937 Capsella rubella HOM05D007210 ORTHO05D006152 2.7e-14 83.2 139 36.0
Carub.0002s0173 Capsella rubella HOM05D007210 ORTHO05D006152 3.5e-14 82.8 116 39.7
BolC5t29096H Brassica oleracea HOM05D007210 ORTHO05D006152 1.8e-13 80.5 155 37.4
BolC9t57698H Brassica oleracea HOM05D007210 ORTHO05D006152 2.3e-13 80.1 71 57.7
BcaC05g24442 Brassica carinata HOM05D007210 ORTHO05D006152 3.9e-13 79.3 139 38.1
BraA10t42618Z Brassica rapa HOM05D007210 ORTHO05D006152 8.7e-13 78.2 159 35.2
A08p00230 Brassica napus HOM05D007210 ORTHO05D006152 2.5e-12 76.6 119 37.0
BcaB07g31391 Brassica carinata HOM05D007210 ORTHO05D006152 3.3e-12 76.3 144 35.4
CARHR048270 Cardamine hirsuta HOM05D007210 ORTHO05D006152 3.3e-12 76.3 110 39.1
C04p12630 Brassica napus HOM05D007210 ORTHO05D006152 5.7e-12 75.5 159 30.8
BolC4t22912H Brassica oleracea HOM05D007210 ORTHO05D006152 5.7e-12 75.5 159 30.8
A10p03420 Brassica napus HOM05D007210 ORTHO05D006152 7.4e-12 75.1 144 35.4
AL5G33880 Arabidopsis lyrata HOM05D008885 ORTHO05D006152 9.6e-12 74.7 139 33.8
BcaNung06875 Brassica carinata HOM05D007210 ORTHO05D006152 9.6e-12 74.7 120 35.8
Thhalv10023805m.g Eutrema salsugineum HOM05D007210 ORTHO05D006152 8.2e-11 71.6 107 36.4
BolC5t30124H Brassica oleracea HOM05D007210 ORTHO05D006152 2.4e-10 70.1 131 32.8
CARHR208050 Cardamine hirsuta HOM05D008885 ORTHO05D006152 2.4e-10 70.1 127 37.0
C05p13910 Brassica napus HOM05D007210 ORTHO05D006152 3.1e-10 69.7 131 32.8
BcaC02g11660 Brassica carinata HOM05D007210 ORTHO05D006152 9.0e-10 68.2 159 28.9
AL6G14830 Arabidopsis lyrata HOM05D008885 ORTHO05D006152 1.2e-09 67.8 143 32.2
BolC8t51626H Brassica oleracea HOM05D007210 ORTHO05D006152 1.0e-08 64.7 97 35.1
THA.LOC104809659 Tarenaya hassleriana HOM05D007210 ORTHO05D006152 1.0e-08 64.7 119 35.3
AL7G39710 Arabidopsis lyrata HOM05D008242 ORTHO05D012602 1.3e-08 64.3 148 33.8
A07p12710 Brassica napus HOM05D008885 ORTHO05D006152 2.2e-08 63.5 125 35.2
CSS0006926 Camellia sinensis var. sinensis HOM05D019829 ORTHO05D007789 2.9e-08 63.2 126 30.2
Sp6g37770 Schrenkiella parvula HOM05D008885 ORTHO05D006152 3.8e-08 62.8 141 34.0
AT5G05060 Arabidopsis thaliana HOM05D008885 ORTHO05D006152 8.5e-08 61.6 160 31.9
Carub.0006s0398 Capsella rubella HOM05D008885 ORTHO05D006152 8.5e-08 61.6 156 30.1
Thhalv10015529m.g Eutrema salsugineum HOM05D008885 ORTHO05D006152 8.5e-08 61.6 113 37.2
BcaC03g13143 Brassica carinata HOM05D008885 ORTHO05D006152 1.1e-07 61.2 137 33.6
C02p02150 Brassica napus HOM05D008885 ORTHO05D006152 1.1e-07 61.2 137 33.6
BolC2t06184H Brassica oleracea HOM05D008885 ORTHO05D006152 1.1e-07 61.2 137 33.6
Lj1A786G23 Lonicera japonica HOM05D011954 ORTHO05D014236 1.1e-07 61.2 126 32.5
BolC2t06185H Brassica oleracea HOM05D008885 ORTHO05D006152 1.4e-07 60.8 136 34.6
BraA02t04832Z Brassica rapa HOM05D008885 ORTHO05D006152 1.4e-07 60.8 137 32.8
AT5G05040 Arabidopsis thaliana HOM05D008885 ORTHO05D006152 1.9e-07 60.5 160 31.2
CSS0001720 Camellia sinensis var. sinensis HOM05D019829 ORTHO05D007789 1.9e-07 60.5 122 31.1
BraA02t04833Z Brassica rapa HOM05D008885 ORTHO05D006152 2.5e-07 60.1 136 31.6
CSS0039646 Camellia sinensis var. sinensis HOM05D019829 ORTHO05D007789 4.2e-07 59.3 125 31.2
Thhalv10015607m.g Eutrema salsugineum HOM05D008885 ORTHO05D006152 4.2e-07 59.3 115 32.2
BcaB05g21736 Brassica carinata HOM05D008885 ORTHO05D006152 5.5e-07 58.9 132 27.3
Dinv01175 Davidia involucrata HOM05D008623 ORTHO05D007789 5.5e-07 58.9 119 36.1
AL7G39700 Arabidopsis lyrata HOM05D008242 ORTHO05D012602 7.2e-07 58.5 157 32.5
BcaB05g21732 Brassica carinata HOM05D008885 ORTHO05D006152 7.2e-07 58.5 136 32.4
BcaB05g21733 Brassica carinata HOM05D008885 ORTHO05D006152 7.2e-07 58.5 136 32.4
QL10p030347 Quercus lobata HOM05D019990 ORTHO05D007789 7.2e-07 58.5 112 37.5
QL10p030388 Quercus lobata HOM05D019990 ORTHO05D007789 7.2e-07 58.5 112 37.5
QL10p030420 Quercus lobata HOM05D019990 ORTHO05D007789 7.2e-07 58.5 112 37.5
BcaB05g21588 Brassica carinata HOM05D008885 ORTHO05D006152 1.2e-06 57.8 137 32.1
Carub.0007s2602 Capsella rubella HOM05D008242 ORTHO05D012602 1.2e-06 57.8 128 32.0
Dinv41634 Davidia involucrata HOM05D008623 ORTHO05D007789 1.6e-06 57.4 119 34.5
BcaB05g21731 Brassica carinata HOM05D008885 ORTHO05D006152 2.7e-06 56.6 113 30.1
BcaC03g13144 Brassica carinata HOM05D008885 ORTHO05D006152 2.7e-06 56.6 134 32.1
C02p02160 Brassica napus HOM05D008885 ORTHO05D006152 2.7e-06 56.6 134 32.1
QL10p030090 Quercus lobata HOM05D019990 ORTHO05D007789 2.7e-06 56.6 108 37.0
BraA02t04831Z Brassica rapa HOM05D008885 ORTHO05D006152 4.6e-06 55.8 115 30.4
AT1G50690 Arabidopsis thaliana HOM05D008885 ORTHO05D006152 6.1e-06 55.5 111 32.4
Carub.0002s0164 Capsella rubella HOM05D007210 ORTHO05D006152 6.1e-06 55.5 47 48.9


User provided reference genes

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