Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p15000 Brassica napus HOM05D004327 ORTHO05D005032 1.3e-186 656.4 360 100.0
A03p12840 Brassica napus HOM05D004327 ORTHO05D005032 3.3e-182 641.7 360 98.3
BolC3t13942H Brassica oleracea HOM05D004327 ORTHO05D005032 1.0e-175 620.2 344 99.4
BraA03t10592Z Brassica rapa HOM05D004327 ORTHO05D005032 1.8e-175 619.4 344 99.4
BcaB01g04457 Brassica carinata HOM05D004327 ORTHO05D005032 5.1e-175 617.8 344 99.1
Sp6g19130 Schrenkiella parvula HOM05D004327 ORTHO05D005032 9.0e-172 607.1 344 97.7
AL8G33390 Arabidopsis lyrata HOM05D004327 ORTHO05D005032 1.0e-170 603.6 344 93.6
Carub.0008s1793 Capsella rubella HOM05D004327 ORTHO05D005032 1.0e-170 603.6 344 95.9
Thhalv10013843m.g Eutrema salsugineum HOM05D004327 ORTHO05D005032 1.3e-170 603.2 344 97.1
CARHR271210 Cardamine hirsuta HOM05D004327 ORTHO05D005032 3.8e-170 601.7 344 96.5
BcaC01g06496 Brassica carinata HOM05D004327 ORTHO05D005032 1.9e-169 599.4 345 96.5
AT5G57410 Arabidopsis thaliana HOM05D004327 ORTHO05D005032 1.5e-166 589.7 344 92.4
Aa31LG3G13300 Aethionema arabicum HOM05D004327 ORTHO05D005032 1.3e-159 566.6 366 86.1
THA.LOC104811786 Tarenaya hassleriana HOM05D004327 ORTHO05D005032 6.5e-154 547.7 344 87.5
THA.LOC104813521 Tarenaya hassleriana HOM05D004327 ORTHO05D005032 1.5e-150 536.6 376 81.9
VMungo1215G1888 Vigna mungo HOM05D004327 ORTHO05D005032 9.7e-150 533.9 342 83.6
Manes.14G154300 Manihot esculenta HOM05D004327 ORTHO05D005032 1.3e-149 533.5 345 84.1
Atru.chr7.613 Acer truncatum HOM05D004327 ORTHO05D005032 1.7e-149 533.1 344 84.0
Thecc.09G176900 Theobroma cacao HOM05D004327 ORTHO05D005032 1.1e-148 530.4 342 85.4
Cpa.g.sc233.7 Carica papaya HOM05D004327 ORTHO05D005032 1.8e-148 529.6 342 83.0
Glyma.13G096600 Glycine max HOM05D004327 ORTHO05D005032 5.3e-148 528.1 348 81.3
Glyma.17G062900 Glycine max HOM05D004327 ORTHO05D005032 1.2e-147 526.9 342 82.7
QL02p097831 Quercus lobata HOM05D004327 ORTHO05D005032 2.6e-147 525.8 342 85.7
CSS0007595 Camellia sinensis var. sinensis HOM05D004327 ORTHO05D005032 4.5e-147 525.0 343 85.1
arahy.Tifrunner.gnm1.ann1.UF0NDT Arachis hypogaea HOM05D004327 ORTHO05D005032 1.0e-146 523.9 342 82.2
Potri.018G092000 Populus trichocarpa HOM05D004327 ORTHO05D005032 1.0e-146 523.9 342 85.1
Dinv42719 Davidia involucrata HOM05D004327 ORTHO05D005032 1.7e-146 523.1 343 81.6
Dinv43382 Davidia involucrata HOM05D004327 ORTHO05D005032 1.7e-146 523.1 343 81.6
Phvul.003G145300 Phaseolus vulgaris HOM05D004327 ORTHO05D005032 2.9e-146 522.3 342 81.6
arahy.Tifrunner.gnm1.ann1.IHC8NS Arachis hypogaea HOM05D004327 ORTHO05D005032 3.8e-146 521.9 342 81.9
CiPaw.07G192500 Carya illinoinensis HOM05D004327 ORTHO05D005032 8.5e-146 520.8 342 81.6
GSVIVG01029211001 Vitis vinifera HOM05D004327 ORTHO05D005032 8.5e-146 520.8 339 85.5
COL.COLO4_37716 Corchorus olitorius HOM05D004327 ORTHO05D005032 1.4e-145 520.0 340 85.0
Medtr4g127970 Medicago truncatula HOM05D004327 ORTHO05D005032 1.4e-145 520.0 342 81.9
Ciclev10008675m.g Citrus clementina HOM05D004327 ORTHO05D005032 1.9e-145 519.6 342 84.8
Gohir.D08G093800 Gossypium hirsutum HOM05D004327 ORTHO05D005032 3.6e-144 515.4 342 83.6
Lj4g0017259 Lotus japonicus HOM05D004327 ORTHO05D005032 3.6e-144 515.4 342 81.6
Ca_21229_v3 Cicer arietinum L. HOM05D004327 ORTHO05D005032 6.1e-144 514.6 342 83.9
Gohir.A08G084200 Gossypium hirsutum HOM05D004327 ORTHO05D005032 1.0e-143 513.8 342 83.3
Lalb_Chr07g0180501 Lupinus albus HOM05D004327 ORTHO05D005032 1.0e-143 513.8 342 80.1
Prupe.1G085300 Prunus persica HOM05D004327 ORTHO05D005032 1.8e-143 513.1 342 80.4
Eucgr.C00153 Eucalyptus grandis HOM05D004327 ORTHO05D005032 2.3e-143 512.7 344 80.2
Hma1.2p1_1025F.1_g249340 Hydrangea macrophylla HOM05D004327 ORTHO05D005032 3.9e-143 511.9 343 81.9
Cc06_g13210 Coffea canephora HOM05D004327 ORTHO05D005032 6.7e-143 511.1 339 83.2
MSTRG.26218 Avicennia marina HOM05D004327 ORTHO05D005032 1.1e-142 510.4 343 79.3
CANSAT11G1121 Cannabis sativa HOM05D004327 ORTHO05D005032 1.5e-142 510.0 342 79.5
Duzib150G0132 Durio zibethinus HOM05D004327 ORTHO05D005032 2.0e-142 509.6 342 83.3
RcHm_v2.0_Chr4g0402371 Rosa chinensis HOM05D004327 ORTHO05D005032 5.7e-142 508.1 345 81.2
Duzib168G0099 Durio zibethinus HOM05D004327 ORTHO05D005032 7.4e-142 507.7 342 83.0
TAR343G0001 Trochodendron aralioides HOM05D004327 ORTHO05D005032 7.4e-142 507.7 343 80.2
Gorai.004G099500 Gossypium raimondii HOM05D004327 ORTHO05D005032 1.3e-141 506.9 353 81.0
TPR.G5449 Trifolium pratense HOM05D004327 ORTHO05D005032 1.3e-141 506.9 342 82.7
Sc14g0001280 Simmondsia chinensis HOM05D004327 ORTHO05D005032 1.7e-141 506.5 335 83.9
DCAR_017971 Daucus carota HOM05D004327 ORTHO05D005032 2.2e-141 506.1 343 79.0
ClCG11G012140 Citrullus lanatus HOM05D004327 ORTHO05D005032 3.7e-141 505.4 342 79.2
PSO063G6085 Papaver somniferum HOM05D004327 ORTHO05D005032 4.8e-141 505.0 344 80.8
CsaV3_2G008420 Cucumis sativus L. HOM05D004327 ORTHO05D005032 6.3e-141 504.6 342 78.7
Migut.K00240 Erythranthe guttata HOM05D004327 ORTHO05D005032 1.1e-140 503.8 343 78.4
vmacro06012 Vaccinium macrocarpon HOM05D004327 ORTHO05D005032 1.8e-140 503.1 333 80.2
MD13G1253000 Malus domestica HOM05D004327 ORTHO05D005032 4.1e-140 501.9 342 78.7
MD16G1257500 Malus domestica HOM05D004327 ORTHO05D005032 5.3e-140 501.5 342 78.7
Sed0007507 Sechium edule HOM05D004327 ORTHO05D005032 1.5e-139 500.0 342 78.1
Migut.J01485 Erythranthe guttata HOM05D004327 ORTHO05D005032 1.7e-138 496.5 343 77.8
Nn8g40460 Nelumbo nucifera HOM05D004327 ORTHO05D005032 2.2e-138 496.1 342 81.0
AL3G53050 Arabidopsis lyrata HOM05D004327 ORTHO05D005032 2.9e-138 495.7 344 76.5
Psat4g169000 Pisum sativum HOM05D004327 ORTHO05D005032 2.9e-138 495.7 328 81.4
PSO170G3199 Papaver somniferum HOM05D004327 ORTHO05D005032 2.5e-137 492.7 344 79.7
MSTRG.6222 Avicennia marina HOM05D004327 ORTHO05D005032 3.2e-137 492.3 343 78.1
HanXRQChr11g0322421 Helianthus annuus HOM05D004327 ORTHO05D005032 3.2e-137 492.3 343 80.2
ECA240G0157 Erigeron canadensis HOM05D004327 ORTHO05D005032 4.2e-137 491.9 343 78.1
FAN22G1646 Fragaria x ananassa HOM05D004327 ORTHO05D005032 5.5e-137 491.5 345 79.7
Rhsim03G0264600 Rhododendron simsii HOM05D004327 ORTHO05D005032 2.7e-136 489.2 343 80.2
FvH4_4g08170 Fragaria vesca HOM05D004327 ORTHO05D005032 3.6e-136 488.8 345 79.4
THA.LOC104803493 Tarenaya hassleriana HOM05D004327 ORTHO05D005032 3.6e-136 488.8 344 79.7
Carub.0003s3311 Capsella rubella HOM05D004327 ORTHO05D005032 2.6e-134 482.6 344 77.6
Sabra18G0079100 Salix brachista HOM05D004327 ORTHO05D005032 2.6e-134 482.6 342 80.4
CARHR109440 Cardamine hirsuta HOM05D004327 ORTHO05D005032 4.4e-134 481.9 350 73.1
Peaxi162Scf00231g00726 Petunia axillaris HOM05D004327 ORTHO05D005032 2.2e-133 479.6 343 78.4
BolC9t54328H Brassica oleracea HOM05D004327 ORTHO05D005032 2.8e-133 479.2 344 74.4
Solyc07g019530.3 Solanum lycopersicum HOM05D004327 ORTHO05D005032 1.4e-132 476.9 343 78.4
Sopen07g008040 Solanum pennellii HOM05D004327 ORTHO05D005032 1.4e-132 476.9 343 78.4
A09p12090 Brassica napus HOM05D004327 ORTHO05D005032 3.1e-132 475.7 347 75.8
CAN.G210.1 Capsicum annuum HOM05D004327 ORTHO05D005032 5.3e-132 474.9 332 79.8
BcaB07g31641 Brassica carinata HOM05D004327 ORTHO05D005032 1.2e-131 473.8 344 76.7
EL10Ac8g18287 Beta vulgaris HOM05D004327 ORTHO05D005032 1.6e-131 473.4 345 77.1
SGA_v2.0_scaffold66G22446 Striga asiatica HOM05D004327 ORTHO05D005032 2.6e-131 472.6 343 77.8
BcaC04g22882 Brassica carinata HOM05D004327 ORTHO05D005032 4.5e-131 471.9 350 75.4
C09p14270 Brassica napus HOM05D004327 ORTHO05D005032 4.5e-131 471.9 350 75.4
BraA09t36853Z Brassica rapa HOM05D004327 ORTHO05D005032 5.9e-131 471.5 344 75.9
Aqoxy7G03046 Aquilegia oxysepala HOM05D004327 ORTHO05D005032 7.7e-131 471.1 330 80.3
Sp3g32340 Schrenkiella parvula HOM05D004327 ORTHO05D005032 7.7e-131 471.1 344 75.0
CDE04G3746 Ceratophyllum demersum HOM05D004327 ORTHO05D005032 2.2e-130 469.5 342 76.0
SalBow6G1961 Salvia bowleyana HOM05D004327 ORTHO05D005032 2.2e-130 469.5 343 76.1
HPP92_019412 Vanilla planifolia HOM05D004327 ORTHO05D005032 2.9e-130 469.2 344 76.2
ATR0580G352 Amborella trichopoda HOM05D004327 ORTHO05D005032 3.8e-130 468.8 341 76.5
Hund09030 Selenicereus undatus HOM05D004327 ORTHO05D005032 5.0e-130 468.4 345 76.8
Lsat_1_v5_gn_7_54620 Lactuca sativa HOM05D004327 ORTHO05D005032 1.1e-129 467.2 339 78.8
ECA236G3505 Erigeron canadensis HOM05D004327 ORTHO05D005032 1.9e-129 466.5 343 76.1
Zm00001eb178290 Zea mays HOM05D004327 ORTHO05D005032 4.2e-129 465.3 342 76.6
Thhalv10022742m.g Eutrema salsugineum HOM05D004327 ORTHO05D005032 2.1e-128 463.0 344 73.0
MBI14_g17374_MAGBIO Magnolia biondii HOM05D004327 ORTHO05D005032 3.6e-128 462.2 342 77.2
AUR62033220 Chenopodium quinoa HOM05D004327 ORTHO05D005032 1.4e-127 460.3 345 76.2
Os08g0242900 Oryza sativa ssp. japonica HOM05D004327 ORTHO05D005032 3.0e-127 459.1 340 76.2
PGR142G4100 Punica granatum HOM05D004327 ORTHO05D005032 8.8e-127 457.6 342 74.0
CDE07G0842 Ceratophyllum demersum HOM05D004327 ORTHO05D005032 4.8e-125 451.8 329 76.3
Lalb_Chr13g0300201 Lupinus albus HOM05D004327 ORTHO05D005032 1.1e-124 450.7 335 74.3
Actinidia17317 Actinidia chinensis HOM05D004327 ORTHO05D005032 2.4e-124 449.5 343 76.7
Aa31LG8G15970 Aethionema arabicum HOM05D004327 ORTHO05D005032 5.4e-124 448.4 345 74.5
SHI02909 Sapria himalayana HOM05D004327 ORTHO05D005032 1.0e-122 444.1 344 73.8
unitig_0.g2679 Utricularia gibba HOM05D004327 ORTHO05D005032 3.8e-122 442.2 350 73.1
Dinv41244 Davidia involucrata HOM05D004327 ORTHO05D005032 3.2e-121 439.1 296 83.8
Sed0007415 Sechium edule HOM05D004327 ORTHO05D005032 7.2e-121 438.0 304 77.3
CiPaw.08G036000 Carya illinoinensis HOM05D004327 ORTHO05D005032 1.5e-118 430.3 358 67.9
AUR62021302 Chenopodium quinoa HOM05D004327 ORTHO05D005032 2.2e-117 426.4 348 71.8
SMO352G0043 Selaginella moellendorffii HOM05D004327 ORTHO05D005032 1.8e-116 423.3 329 68.1
AagrBONN_evm.TU.Sc2ySwM_117.785 Anthoceros agrestis HOM05D004327 ORTHO05D005032 2.7e-115 419.5 350 64.9
Pp3c12_10100 Physcomitrium patens HOM05D004327 ORTHO05D005032 9.5e-113 411.0 348 62.9
Lj9A24G29 Lonicera japonica HOM05D004327 ORTHO05D005032 2.4e-108 396.4 268 79.1
BcaB01g04461 Brassica carinata HOM05D004327 ORTHO05D005032 3.2e-108 396.0 345 71.3
TAR636G3612 Trochodendron aralioides HOM05D000809 ORTHO05D001196 1.2e-107 394.0 292 79.8
Nitab4.5_0004572g0010 Nicotiana tabacum HOM05D004327 ORTHO05D005032 7.8e-107 391.3 358 66.5
Pp3c5_23860 Physcomitrium patens HOM05D004327 ORTHO05D005032 3.9e-106 389.0 347 59.7
FAN17G0468 Fragaria x ananassa HOM05D004327 ORTHO05D005032 1.1e-105 387.5 309 71.8
AT2G18876 Arabidopsis thaliana HOM05D004327 ORTHO05D005032 5.6e-105 385.2 270 77.8
MELO3C004022.2 Cucumis melo HOM05D004327 ORTHO05D005032 3.1e-103 379.4 289 73.7
Pp3c3_22200 Physcomitrium patens HOM05D004327 ORTHO05D005032 6.8e-103 378.3 346 59.8
Pp3c10_16450 Physcomitrium patens HOM05D004327 ORTHO05D005032 5.8e-102 375.2 293 66.9
Nitab4.5_0005945g0010 Nicotiana tabacum HOM05D004327 ORTHO05D005032 6.6e-98 361.7 343 64.1
Actinidia38633 Actinidia chinensis HOM05D004327 ORTHO05D005032 8.6e-98 361.3 272 72.8
SMO137G0257 Selaginella moellendorffii HOM05D004327 ORTHO05D005032 4.3e-97 359.0 326 59.5
Mapoly0023s0050 Marchantia polymorpha HOM05D004327 ORTHO05D005032 1.2e-96 357.5 334 59.6
CBR_g34541 Chara braunii HOM05D004327 ORTHO05D005032 9.8e-94 347.8 336 57.7
Pp3c16_10790 Physcomitrium patens HOM05D004327 ORTHO05D005032 3.7e-93 345.9 343 56.0
Duzib170G0255 Durio zibethinus HOM05D004327 ORTHO05D005032 1.4e-92 344.0 222 83.8
Haze_22092 Corylus avellana HOM05D004327 ORTHO05D005032 2.7e-91 339.7 246 74.8
Actinidia27011 Actinidia chinensis HOM05D004327 ORTHO05D005032 4.6e-91 339.0 289 71.6
BcaC01g06490 Brassica carinata HOM05D004327 ORTHO05D005032 2.8e-88 329.7 174 98.9
CBR_g4121 Chara braunii HOM05D004327 ORTHO05D005032 3.4e-86 322.8 339 57.5
Actinidia02748 Actinidia chinensis HOM05D004327 ORTHO05D005032 1.2e-80 304.3 224 75.9
BcaC01g06489 Brassica carinata HOM05D004327 ORTHO05D005032 2.1e-51 207.2 121 99.2
Aqoxy4G01695 Aquilegia oxysepala HOM05D004327 ORTHO05D005032 1.4e-47 194.5 124 83.9
Oeu042171.1 Olea europaea HOM05D004327 ORTHO05D005032 6.3e-40 169.1 118 77.1
FAN17G0800 Fragaria x ananassa HOM05D004327 ORTHO05D005032 4.5e-38 162.9 117 75.2
Haze_22093 Corylus avellana HOM05D004327 ORTHO05D005032 3.8e-37 159.8 129 72.9
Lj9A25T20 Lonicera japonica HOM05D004327 ORTHO05D005032 1.3e-29 134.8 97 73.2
SEGI_01506 Sequoiadendron giganteum HOM05D004327 ORTHO05D005032 6.5e-29 132.5 101 71.3
HanXRQChr09g0245491 Helianthus annuus HOM05D000502 ORTHO05D005032 1.2e-27 128.3 79 74.7
BraA02t05921Z Brassica rapa HOM05D004327 ORTHO05D005032 1.4e-26 124.8 90 80.0
HanXRQChr08g0229701 Helianthus annuus HOM05D000502 ORTHO05D005032 1.8e-26 124.4 70 80.0
HanXRQChr13g0404041 Helianthus annuus HOM05D000502 ORTHO05D005032 1.1e-25 121.7 72 77.8
C02p14250 Brassica napus HOM05D004327 ORTHO05D032179 2.8e-24 117.1 134 56.7
BcaB05g22345 Brassica carinata HOM05D004327 ORTHO05D005032 3.8e-21 106.7 93 66.7
Pp3c26_7180 Physcomitrium patens HOM05D004327 ORTHO05D005032 5.5e-20 102.8 100 50.0
SEGI_38031 Sequoiadendron giganteum HOM05D004327 ORTHO05D005032 7.2e-20 102.4 82 68.3
Aqoxy7G03035 Aquilegia oxysepala HOM05D004327 ORTHO05D005032 3.7e-16 90.1 130 46.2
BcaC03g14154 Brassica carinata HOM05D004327 ORTHO05D032179 3.7e-16 90.1 76 64.5
CiPaw.01G111100 Carya illinoinensis HOM05D002292 ORTHO05D005032 6.3e-16 89.4 58 86.2
Pp3c25_9090 Physcomitrium patens HOM05D004327 ORTHO05D005032 1.9e-12 77.8 97 51.5
COL.COLO4_28287 Corchorus olitorius HOM05D004327 ORTHO05D005032 3.2e-12 77.0 51 84.3
BolC9t54329H Brassica oleracea HOM05D004327 ORTHO05D005032 5.5e-12 76.3 57 71.9
Oeu003512.1 Olea europaea HOM05D004327 ORTHO05D005032 8.0e-11 72.4 42 83.3
Glyma.09G140000 Glycine max HOM05D004327 ORTHO05D005032 1.8e-10 71.2 60 55.0
CiPaw.16G058000 Carya illinoinensis HOM05D002292 ORTHO05D003256 3.1e-07 60.5 38 86.8
BolC2t07549H Brassica oleracea HOM05D004327 ORTHO05D032179 1.2e-06 58.5 80 53.8
PRCOL_00002192 Prasinoderma coloniale HOM05D004327 ORTHO05D005032 7.7e-06 55.8 249 24.5


User provided reference genes

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