Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p14980 Brassica napus HOM05D005586 ORTHO05D007044 0.0e+00 1179.5 644 100.0
BolC3t13940H Brassica oleracea HOM05D005586 ORTHO05D007044 0.0e+00 1168.3 644 99.1
A03p12820 Brassica napus HOM05D005586 ORTHO05D007044 0.0e+00 1167.1 644 98.8
BraA03t10590Z Brassica rapa HOM05D005586 ORTHO05D007044 0.0e+00 1166.0 644 98.4
BcaC01g06487 Brassica carinata HOM05D005586 ORTHO05D007044 0.0e+00 1164.8 644 98.6
BcaB01g04458 Brassica carinata HOM05D005586 ORTHO05D007044 0.0e+00 1139.0 646 95.7
AT5G57460 Arabidopsis thaliana HOM05D005586 ORTHO05D007044 0.0e+00 1120.5 647 92.9
AL8G33420 Arabidopsis lyrata HOM05D005586 ORTHO05D007044 0.0e+00 1120.1 644 92.9
Carub.0008s1797 Capsella rubella HOM05D005586 ORTHO05D007044 0.0e+00 1109.7 645 93.2
CARHR271250 Cardamine hirsuta HOM05D005586 ORTHO05D007044 0.0e+00 1103.2 650 91.1
Aa31LG3G13340 Aethionema arabicum HOM05D005586 ORTHO05D007044 0.0e+00 1095.9 644 87.1
BcaB08g36100 Brassica carinata HOM05D005586 ORTHO05D007044 0.0e+00 1095.9 646 89.5
C09p49310 Brassica napus HOM05D005586 ORTHO05D007044 0.0e+00 1095.9 646 90.9
BcaC04g19966 Brassica carinata HOM05D005586 ORTHO05D007044 0.0e+00 1090.1 648 90.7
Sp6g19170 Schrenkiella parvula HOM05D005586 ORTHO05D007044 0.0e+00 1077.8 646 91.0
A10p14890 Brassica napus HOM05D005586 ORTHO05D007044 0.0e+00 1077.0 647 89.0
BraA10t43568Z Brassica rapa HOM05D005586 ORTHO05D007044 4.4e-312 1074.3 647 87.0
Thhalv10015707m.g Eutrema salsugineum HOM05D005586 ORTHO05D007044 3.1e-311 1071.2 644 90.2
BolC9t57782H Brassica oleracea HOM05D005586 ORTHO05D007044 9.7e-310 1066.2 646 89.3
Aa31LG3G220 Aethionema arabicum HOM05D005586 ORTHO05D007044 4.7e-296 1020.8 647 81.0
THA.LOC104811789 Tarenaya hassleriana HOM05D005586 ORTHO05D007044 1.0e-295 1019.6 647 82.7
COL.COLO4_33680 Corchorus olitorius HOM05D005586 ORTHO05D007044 5.2e-263 911.0 655 72.8
Duzib168G0896 Durio zibethinus HOM05D005586 ORTHO05D007044 4.1e-260 901.4 654 71.7
TWI60G0698 Tripterygium wilfordii HOM05D005586 ORTHO05D007044 5.4e-260 901.0 658 72.0
Ciclev10007551m.g Citrus clementina HOM05D005586 ORTHO05D007044 3.0e-258 895.2 652 71.3
Cpa.g.sc95.50 Carica papaya HOM05D005586 ORTHO05D007044 8.6e-258 893.6 632 76.1
Prupe.2G007900 Prunus persica HOM05D005586 ORTHO05D007044 1.5e-257 892.9 658 71.7
Gohir.A08G084500 Gossypium hirsutum HOM05D005586 ORTHO05D007044 5.6e-257 891.0 653 72.3
CANSAT11G2700 Cannabis sativa HOM05D005586 ORTHO05D007044 2.1e-256 889.0 655 70.1
Gorai.004G099900 Gossypium raimondii HOM05D005586 ORTHO05D007044 2.1e-256 889.0 653 72.4
Atru.chr7.639 Acer truncatum HOM05D005586 ORTHO05D007044 3.6e-256 888.3 661 70.3
Ca_21173_v3 Cicer arietinum L. HOM05D005586 ORTHO05D007044 6.2e-256 887.5 654 70.3
Ca_21222_v3 Cicer arietinum L. HOM05D005586 ORTHO05D007044 6.2e-256 887.5 654 70.3
MELO3C017465.2 Cucumis melo HOM05D005586 ORTHO05D007044 1.5e-254 882.9 658 70.7
ClCG06G013320 Citrullus lanatus HOM05D005586 ORTHO05D007044 2.0e-254 882.5 658 70.5
Lalb_Chr12g0199381 Lupinus albus HOM05D005586 ORTHO05D007044 3.7e-253 878.2 656 69.8
Potri.006G168200 Populus trichocarpa HOM05D005586 ORTHO05D007044 1.4e-252 876.3 661 71.4
arahy.Tifrunner.gnm1.ann1.F5X18S Arachis hypogaea HOM05D005586 ORTHO05D007044 1.9e-252 875.9 656 69.2
Medtr4g128210 Medicago truncatula HOM05D005586 ORTHO05D007044 3.2e-252 875.2 653 69.2
CsaV3_1G031580 Cucumis sativus L. HOM05D005586 ORTHO05D007044 5.4e-252 874.4 659 70.0
Sed0005590 Sechium edule HOM05D005586 ORTHO05D007044 1.6e-251 872.8 657 70.5
Lj4g0013239 Lotus japonicus HOM05D005586 ORTHO05D007044 3.5e-251 871.7 652 68.4
Psat0s509g0200 Pisum sativum HOM05D005586 ORTHO05D007044 3.5e-251 871.7 655 69.3
Sabra06G0129800 Salix brachista HOM05D005586 ORTHO05D007044 4.6e-251 871.3 660 70.6
Sed0016049 Sechium edule HOM05D005586 ORTHO05D007044 7.8e-251 870.5 658 70.1
RcHm_v2.0_Chr4g0402481 Rosa chinensis HOM05D005586 ORTHO05D007044 1.7e-250 869.4 649 70.3
QL02p097708 Quercus lobata HOM05D005586 ORTHO05D007044 8.6e-250 867.1 652 70.7
Glyma.17G063500 Glycine max HOM05D005586 ORTHO05D007044 1.5e-249 866.3 653 69.4
Thecc.09G173100 Theobroma cacao HOM05D005586 ORTHO05D007044 1.5e-249 866.3 633 72.2
Glyma.20G083600 Glycine max HOM05D005586 ORTHO05D007044 1.9e-249 865.9 653 69.5
FAN08G2362 Fragaria x ananassa HOM05D005586 ORTHO05D007044 1.6e-248 862.8 652 69.6
FAN18G4074 Fragaria x ananassa HOM05D005586 ORTHO05D007044 2.8e-248 862.1 652 69.3
Eucgr.C02307 Eucalyptus grandis HOM05D005586 ORTHO05D007044 6.2e-248 860.9 663 70.0
FvH4_5g27790 Fragaria vesca HOM05D005586 ORTHO05D007044 6.2e-248 860.9 652 69.2
CiPaw.07G192200 Carya illinoinensis HOM05D005586 ORTHO05D007044 1.8e-247 859.4 656 70.7
Dinv41251 Davidia involucrata HOM05D005586 ORTHO05D007044 3.1e-247 858.6 646 70.1
PGR102G3328 Punica granatum HOM05D005586 ORTHO05D007044 8.9e-247 857.1 654 69.0
Phvul.003G146100 Phaseolus vulgaris HOM05D005586 ORTHO05D007044 3.4e-246 855.1 651 69.3
Lj9P685T24 Lonicera japonica HOM05D005586 ORTHO05D007044 1.6e-243 846.3 654 67.7
MD13G1254800 Malus domestica HOM05D005586 ORTHO05D007044 2.1e-243 845.9 648 69.8
Haze_22099 Corylus avellana HOM05D005586 ORTHO05D007044 3.5e-243 845.1 658 67.6
Cfa013507 Carpinus fangiana HOM05D005586 ORTHO05D007044 1.7e-242 842.8 660 66.7
Manes.14G153700 Manihot esculenta HOM05D005586 ORTHO05D007044 3.9e-242 841.6 643 69.7
BcaC01g06491 Brassica carinata HOM05D005586 ORTHO05D007044 2.5e-241 839.0 626 74.6
VMungo1215G0758 Vigna mungo HOM05D005586 ORTHO05D007044 4.3e-241 838.2 639 69.5
DCAR_017968 Daucus carota HOM05D005586 ORTHO05D007044 2.1e-240 835.9 650 68.2
Dinv25464 Davidia involucrata HOM05D005586 ORTHO05D007044 3.6e-240 835.1 646 68.6
Aqoxy7G02326 Aquilegia oxysepala HOM05D005586 ORTHO05D007044 4.7e-240 834.7 657 67.1
Cc06_g13260 Coffea canephora HOM05D005586 ORTHO05D007044 4.0e-239 831.6 656 67.7
CSS0030464 Camellia sinensis var. sinensis HOM05D005586 ORTHO05D007044 3.4e-238 828.6 653 68.0
MSTRG.6212 Avicennia marina HOM05D005586 ORTHO05D007044 1.7e-237 826.2 655 66.4
TAR626G0800 Trochodendron aralioides HOM05D005586 ORTHO05D007044 1.7e-237 826.2 656 67.1
TPR.G5407 Trifolium pratense HOM05D005586 ORTHO05D007044 2.2e-237 825.9 577 73.0
TAR383G0761 Trochodendron aralioides HOM05D005586 ORTHO05D007044 1.4e-236 823.2 658 67.2
Rhsim07G0149700 Rhododendron simsii HOM05D005586 ORTHO05D007044 7.1e-236 820.8 646 67.3
Ah.14g083790 Amaranthus hybridus HOM05D005586 ORTHO05D007044 4.6e-235 818.1 656 67.4
Sc08g0005320 Simmondsia chinensis HOM05D005586 ORTHO05D007044 3.3e-233 812.0 656 66.9
ECA234G4574 Erigeron canadensis HOM05D005586 ORTHO05D007044 4.3e-233 811.6 654 66.7
PSO170G6484 Papaver somniferum HOM05D005586 ORTHO05D007044 5.6e-233 811.2 658 66.1
Gohir.D08G094100 Gossypium hirsutum HOM05D005586 ORTHO05D007044 7.3e-233 810.8 653 67.8
Peaxi162Scf00231g00064 Petunia axillaris HOM05D005586 ORTHO05D007044 7.3e-233 810.8 657 65.3
Oeu025223.1 Olea europaea HOM05D005586 ORTHO05D007044 2.8e-232 808.9 650 65.1
CSS0000496 Camellia sinensis var. sinensis HOM05D005586 ORTHO05D007044 1.8e-231 806.2 653 66.8
Nitab4.5_0000730g0080 Nicotiana tabacum HOM05D005586 ORTHO05D007044 3.1e-231 805.4 658 65.8
Solyc10g078790.1 Solanum lycopersicum HOM05D005586 ORTHO05D007044 4.0e-231 805.1 656 65.2
PGSC0003DMG400011415 Solanum tuberosum HOM05D005586 ORTHO05D007044 9.0e-231 803.9 656 65.2
Sopen10g029410 Solanum pennellii HOM05D005586 ORTHO05D007044 1.2e-230 803.5 656 65.1
PSO063G4043 Papaver somniferum HOM05D005586 ORTHO05D007044 1.5e-230 803.1 658 65.5
Hma1.2p1_1025F.1_g249260 Hydrangea macrophylla HOM05D005586 ORTHO05D007044 2.0e-230 802.7 576 72.2
SHI41749 Sapria himalayana HOM05D005586 ORTHO05D007044 3.4e-230 802.0 660 65.2
EL10Ac8g18286 Beta vulgaris HOM05D005586 ORTHO05D007044 7.6e-230 800.8 662 68.1
Oeu009835.1 Olea europaea HOM05D005586 ORTHO05D007044 7.6e-230 800.8 649 64.4
Lj7P472T26 Lonicera japonica HOM05D005586 ORTHO05D007044 1.3e-229 800.0 655 64.4
SGA_v2.0_scaffold17G07909 Striga asiatica HOM05D005586 ORTHO05D007044 1.9e-228 796.2 647 66.0
Nn4g25000 Nelumbo nucifera HOM05D005586 ORTHO05D007044 1.6e-227 793.1 637 66.7
Migut.J01477 Erythranthe guttata HOM05D005586 ORTHO05D007044 2.1e-227 792.7 655 63.4
Lsat_1_v5_gn_5_84680 Lactuca sativa HOM05D005586 ORTHO05D007044 1.3e-226 790.0 657 64.2
CAN.G1161.32 Capsicum annuum HOM05D005586 ORTHO05D007044 1.8e-226 789.6 659 64.2
Nitab4.5_0004134g0010 Nicotiana tabacum HOM05D005586 ORTHO05D007044 2.5e-225 785.8 651 65.6
Nitab4.5_0000455g0040 Nicotiana tabacum HOM05D005586 ORTHO05D007044 2.1e-224 782.7 647 65.7
MBI03_g13495_MAGBIO Magnolia biondii HOM05D005586 ORTHO05D007044 1.3e-221 773.5 660 63.6
GSVIVG01029208001 Vitis vinifera HOM05D005586 ORTHO05D007044 1.3e-221 773.5 648 64.2
MD13G1254300 Malus domestica HOM05D005586 ORTHO05D007044 5.5e-212 741.5 645 64.0
AUR62021301 Chenopodium quinoa HOM05D005586 ORTHO05D007044 6.0e-211 738.0 656 62.0
AUR62033219 Chenopodium quinoa HOM05D005586 ORTHO05D007044 7.9e-211 737.6 656 61.7
MBI14_g17367_MAGBIO Magnolia biondii HOM05D005586 ORTHO05D007044 2.3e-210 736.1 652 60.4
PSO541G5977 Papaver somniferum HOM05D005586 ORTHO05D007044 6.7e-210 734.6 662 61.5
CDE04G2484 Ceratophyllum demersum HOM05D005586 ORTHO05D007044 8.7e-210 734.2 654 61.3
BcaC01g06494 Brassica carinata HOM05D005586 ORTHO05D007044 4.8e-208 728.4 626 71.6
ATR0618G120 Amborella trichopoda HOM05D005586 ORTHO05D007044 5.9e-198 694.9 655 57.9
SalBow6G0691 Salvia bowleyana HOM05D005586 ORTHO05D007044 2.9e-197 692.6 648 58.2
SalBow1G5715 Salvia bowleyana HOM05D005586 ORTHO05D007044 3.0e-194 682.6 655 57.7
Actinidia15717 Actinidia chinensis HOM05D005586 ORTHO05D007044 1.2e-187 660.6 636 59.0
SEGI_38070 Sequoiadendron giganteum HOM05D005586 ORTHO05D007044 6.1e-187 658.3 660 55.0
Os08g0243900 Oryza sativa ssp. japonica HOM05D005586 ORTHO05D007044 4.5e-182 642.1 654 56.6
Actinidia14649 Actinidia chinensis HOM05D005586 ORTHO05D007044 8.5e-181 637.9 551 63.5
MBI18_g04576_MAGBIO Magnolia biondii HOM05D005586 ORTHO05D007044 4.7e-179 632.1 646 57.0
Zm00001eb414690 Zea mays HOM05D005586 ORTHO05D007044 2.3e-178 629.8 656 53.7
Hma1.2p1_3184F.1_g333760 Hydrangea macrophylla HOM05D005586 ORTHO05D007044 5.7e-177 625.2 647 56.6
CDE02G2425 Ceratophyllum demersum HOM05D005586 ORTHO05D007044 1.1e-159 567.8 659 50.4
MBI16_g35931_MAGBIO Magnolia biondii HOM05D005586 ORTHO05D007044 3.5e-150 536.2 553 55.9
Mapoly0111s0055 Marchantia polymorpha HOM05D005586 ORTHO05D007044 2.3e-146 523.5 680 46.5
Pp3c25_4850 Physcomitrium patens HOM05D005586 ORTHO05D007044 6.8e-138 495.4 679 43.4
AagrBONN_evm.TU.Sc2ySwM_368.670 Anthoceros agrestis HOM05D005586 ORTHO05D007044 1.6e-123 447.6 684 42.1
COL.COLO4_04392 Corchorus olitorius HOM05D005586 ORTHO05D007044 8.7e-117 425.2 349 64.5
unitig_899.g14852 Utricularia gibba HOM05D005586 ORTHO05D007044 1.1e-103 381.7 338 63.6
unitig_899.g14851 Utricularia gibba HOM05D005586 ORTHO05D007044 7.4e-92 342.4 243 67.9
SMO228G0090 Selaginella moellendorffii HOM05D005586 ORTHO05D007044 2.5e-87 327.4 385 48.1
HPP92_000781 Vanilla planifolia HOM05D005586 ORTHO05D007044 3.6e-62 243.8 296 50.7
CBR_g26159 Chara braunii HOM05D005586 ORTHO05D000002 4.4e-44 183.7 563 28.2
QL11p053068 Quercus lobata HOM05D005586 ORTHO05D007044 1.7e-40 171.8 113 75.2
MD16G1258000 Malus domestica HOM05D005586 ORTHO05D007044 6.4e-35 153.3 118 66.1
MD16G1258100 Malus domestica HOM05D005586 ORTHO05D007044 1.6e-25 122.1 113 64.6
Oeu013635.1 Olea europaea HOM05D006172 ORTHO05D005515 3.6e-14 84.3 94 52.1
CBR_g26157 Chara braunii HOM05D005586 ORTHO05D007044 4.6e-09 67.4 99 37.4
MBI16_g35933_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D009834 7.8e-09 66.6 44 70.5
MBI16_g35934_MAGBIO Magnolia biondii HOM05D005586 ORTHO05D007044 9.6e-07 59.7 51 54.9


User provided reference genes

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