Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p14560 Brassica napus HOM05D005686 ORTHO05D006798 2.1e-106 389.0 198 100.0
BolC3t13898H Brassica oleracea HOM05D005686 ORTHO05D006798 1.0e-100 370.2 198 95.5
BraA03t10552Z Brassica rapa HOM05D005686 ORTHO05D006798 1.7e-100 369.4 198 95.5
A03p12400 Brassica napus HOM05D005686 ORTHO05D006798 5.1e-100 367.9 198 94.9
BcaB01g04553 Brassica carinata HOM05D005686 ORTHO05D006798 2.9e-95 352.1 203 90.6
BcaB01g04476 Brassica carinata HOM05D005686 ORTHO05D006798 4.9e-95 351.3 199 91.5
BolC9t57855H Brassica oleracea HOM05D005686 ORTHO05D006798 1.1e-94 350.1 193 91.7
BcaC04g19906 Brassica carinata HOM05D005686 ORTHO05D006798 2.4e-94 349.0 193 91.2
A10p16070 Brassica napus HOM05D005686 ORTHO05D006798 9.2e-94 347.1 193 91.7
BraA10t43622Z Brassica rapa HOM05D005686 ORTHO05D006798 9.2e-94 347.1 193 91.7
BcaB08g36164 Brassica carinata HOM05D005686 ORTHO05D006798 3.9e-92 341.7 193 90.2
C09p50020 Brassica napus HOM05D005686 ORTHO05D006798 1.9e-91 339.3 186 91.4
Thhalv10014732m.g Eutrema salsugineum HOM05D005686 ORTHO05D006798 1.9e-91 339.3 198 86.9
Sp6g19800 Schrenkiella parvula HOM05D005686 ORTHO05D006798 7.3e-91 337.4 196 90.3
AL8G34220 Arabidopsis lyrata HOM05D005686 ORTHO05D006798 4.0e-89 331.6 197 88.3
AT5G58110 Arabidopsis thaliana HOM05D005686 ORTHO05D006798 1.5e-88 329.7 197 87.8
Carub.0008s1867 Capsella rubella HOM05D005686 ORTHO05D006798 1.3e-87 326.6 197 87.3
CARHR271940 Cardamine hirsuta HOM05D005686 ORTHO05D006798 2.4e-86 322.4 199 86.4
Aa31LG3G13950 Aethionema arabicum HOM05D005244 ORTHO05D006539 4.4e-80 301.6 216 74.5
THA.LOC104811843 Tarenaya hassleriana HOM05D005686 ORTHO05D006798 2.8e-74 282.3 198 74.2
Eucgr.C02152 Eucalyptus grandis HOM05D005686 ORTHO05D006798 5.6e-67 258.1 195 67.7
Sed0010250 Sechium edule HOM05D005686 ORTHO05D006798 1.6e-66 256.5 191 64.4
CiPaw.08G000400 Carya illinoinensis HOM05D005686 ORTHO05D006798 3.7e-66 255.4 192 65.6
Manes.18G145300 Manihot esculenta HOM05D005686 ORTHO05D006798 3.7e-66 255.4 196 66.3
ClCG03G011610 Citrullus lanatus HOM05D005686 ORTHO05D006798 1.8e-65 253.1 194 65.5
PGR142G1985 Punica granatum HOM05D005686 ORTHO05D006798 5.3e-65 251.5 196 63.8
Cpa.g.sc46.112 Carica papaya HOM05D005686 ORTHO05D006798 6.9e-65 251.1 198 66.7
Cfa012874 Carpinus fangiana HOM05D005686 ORTHO05D006798 6.9e-65 251.1 191 66.5
TWI32G0912 Tripterygium wilfordii HOM05D005686 ORTHO05D006798 5.8e-64 248.1 192 64.1
Cc06_g23520 Coffea canephora HOM05D005686 ORTHO05D006798 7.6e-64 247.7 185 66.5
MD04G1000800 Malus domestica HOM05D005686 ORTHO05D006798 1.0e-63 247.3 193 64.8
Hma1.2p1_0391F.1_g142870 Hydrangea macrophylla HOM05D005686 ORTHO05D006798 1.3e-63 246.9 199 64.8
Lsat_1_v5_gn_7_57081 Lactuca sativa HOM05D005686 ORTHO05D006798 1.3e-63 246.9 193 66.3
Ciclev10009500m.g Citrus clementina HOM05D005686 ORTHO05D006798 1.7e-63 246.5 195 63.1
COL.COLO4_09003 Corchorus olitorius HOM05D005686 ORTHO05D006798 1.7e-63 246.5 201 64.7
Potri.006G080900 Populus trichocarpa HOM05D005686 ORTHO05D006798 2.9e-63 245.7 196 65.3
Thecc.09G202000 Theobroma cacao HOM05D005686 ORTHO05D006798 3.8e-63 245.4 196 65.8
TAR383G0056 Trochodendron aralioides HOM05D005686 ORTHO05D006798 3.8e-63 245.4 192 67.2
Nitab4.5_0004788g0010 Nicotiana tabacum HOM05D005686 ORTHO05D006798 6.5e-63 244.6 194 65.5
GSVIVG01034255001 Vitis vinifera HOM05D005686 ORTHO05D006798 6.5e-63 244.6 193 63.7
Nitab4.5_0000019g0070 Nicotiana tabacum HOM05D005686 ORTHO05D006798 8.4e-63 244.2 194 64.9
EL10Ac2g03596 Beta vulgaris HOM05D005686 ORTHO05D006798 1.4e-62 243.4 191 63.9
Gorai.004G024000 Gossypium raimondii HOM05D005686 ORTHO05D006798 2.5e-62 242.7 187 67.4
FvH4_4g00120 Fragaria vesca HOM05D005686 ORTHO05D006798 5.5e-62 241.5 201 62.2
Gohir.A08G016700 Gossypium hirsutum HOM05D005686 ORTHO05D006798 1.2e-61 240.4 208 62.5
Gohir.D08G027100 Gossypium hirsutum HOM05D005686 ORTHO05D006798 1.6e-61 240.0 187 65.8
FAN17G2251 Fragaria x ananassa HOM05D005686 ORTHO05D006798 2.1e-61 239.6 201 61.7
Aqoxy7G02566 Aquilegia oxysepala HOM05D005686 ORTHO05D006798 2.7e-61 239.2 191 63.4
AUR62020755 Chenopodium quinoa HOM05D005686 ORTHO05D006798 2.7e-61 239.2 196 62.2
Sc23g0005700 Simmondsia chinensis HOM05D005686 ORTHO05D006798 3.5e-61 238.8 197 62.9
CANSAT80G2136 Cannabis sativa HOM05D005686 ORTHO05D006798 4.6e-61 238.4 212 59.0
ECA240G1888 Erigeron canadensis HOM05D005686 ORTHO05D006798 7.9e-61 237.7 193 63.2
Migut.J00862 Erythranthe guttata HOM05D005686 ORTHO05D006798 7.9e-61 237.7 189 65.1
RcHm_v2.0_Chr4g0384721 Rosa chinensis HOM05D005686 ORTHO05D006798 7.9e-61 237.7 200 61.5
Atru.chr7.1021 Acer truncatum HOM05D005686 ORTHO05D006798 1.0e-60 237.3 204 59.8
FAN22G1914 Fragaria x ananassa HOM05D005686 ORTHO05D006798 1.0e-60 237.3 201 61.7
CSS0031712 Camellia sinensis var. sinensis HOM05D005686 ORTHO05D006798 1.3e-60 236.9 189 62.4
AUR62027958 Chenopodium quinoa HOM05D005686 ORTHO05D006798 1.3e-60 236.9 194 61.3
CSS0027001 Camellia sinensis var. sinensis HOM05D005686 ORTHO05D006798 2.3e-60 236.1 189 62.4
MSTRG.5975 Avicennia marina HOM05D005686 ORTHO05D006798 3.9e-60 235.3 190 63.2
HanXRQChr03g0066651 Helianthus annuus HOM05D005686 ORTHO05D006798 5.1e-60 235.0 193 64.8
Oeu000268.1 Olea europaea HOM05D005686 ORTHO05D006798 5.1e-60 235.0 194 62.4
Potri.018G151500 Populus trichocarpa HOM05D005686 ORTHO05D006798 2.5e-59 232.6 198 63.1
PSO063G6522 Papaver somniferum HOM05D005686 ORTHO05D006798 4.3e-59 231.9 187 61.0
Os06g0703800 Oryza sativa ssp. japonica HOM05D005686 ORTHO05D006798 5.7e-59 231.5 199 61.3
Os02g0139100 Oryza sativa ssp. japonica HOM05D005686 ORTHO05D006798 1.3e-58 230.3 193 62.2
PSO170G1777 Papaver somniferum HOM05D005686 ORTHO05D006798 2.1e-58 229.6 187 60.4
unitig_699.g19254 Utricularia gibba HOM05D005686 ORTHO05D006798 2.8e-58 229.2 191 59.7
Zm00001eb232010 Zea mays HOM05D005686 ORTHO05D006798 3.7e-58 228.8 189 61.9
ATR0626G256 Amborella trichopoda HOM05D005686 ORTHO05D006798 4.8e-58 228.4 195 60.5
Glyma.08G359900 Glycine max HOM05D005686 ORTHO05D006798 4.1e-57 225.3 192 59.9
Lj2g0013423 Lotus japonicus HOM05D005686 ORTHO05D006798 4.1e-57 225.3 198 59.1
Peaxi162Scf00322g00914 Petunia axillaris HOM05D005686 ORTHO05D006798 4.1e-57 225.3 205 58.0
arahy.Tifrunner.gnm1.ann1.G6JDG7 Arachis hypogaea HOM05D005686 ORTHO05D006798 5.3e-57 224.9 195 61.5
arahy.Tifrunner.gnm1.ann1.1A52WD Arachis hypogaea HOM05D005686 ORTHO05D006798 6.9e-57 224.6 195 61.5
Glyma.01G001000 Glycine max HOM05D005686 ORTHO05D006798 6.9e-57 224.6 199 59.8
QL11p005743 Quercus lobata HOM05D005686 ORTHO05D006798 1.2e-56 223.8 252 49.6
HanXRQChr09g0245301 Helianthus annuus HOM05D005686 ORTHO05D006798 1.5e-56 223.4 187 62.6
SGA_v2.0_scaffold21G09585 Striga asiatica HOM05D005686 ORTHO05D006798 1.7e-55 219.9 215 55.3
Ca_25642_v3 Cicer arietinum L. HOM05D005686 ORTHO05D006798 3.8e-55 218.8 193 59.1
DCAR_014582 Daucus carota HOM05D005686 ORTHO05D006798 1.4e-54 216.9 194 58.8
vmacro20730 Vaccinium macrocarpon HOM05D005686 ORTHO05D006798 1.4e-54 216.9 242 51.7
MELO3C010013.2 Cucumis melo HOM05D005686 ORTHO05D006798 4.2e-54 215.3 285 46.0
Psat1g052000 Pisum sativum HOM05D005686 ORTHO05D006798 6.1e-53 211.5 195 59.0
CsaV3_1G044180 Cucumis sativus L. HOM05D005686 ORTHO05D006798 3.0e-52 209.1 159 66.7
HPP92_017040 Vanilla planifolia HOM05D005686 ORTHO05D006798 1.1e-51 207.2 196 58.7
CDE04G0009 Ceratophyllum demersum HOM05D005686 ORTHO05D006798 3.3e-51 205.7 190 54.2
FAN12G3064 Fragaria x ananassa HOM05D005686 ORTHO05D006798 2.2e-50 203.0 167 62.9
Dinv26497 Davidia involucrata HOM05D005686 ORTHO05D006798 2.8e-50 202.6 146 69.2
CAN.G357.2 Capsicum annuum HOM05D005686 ORTHO05D006798 3.7e-50 202.2 142 66.9
Lalb_Chr24g0401731 Lupinus albus HOM05D005686 ORTHO05D006798 8.2e-50 201.1 199 53.8
Duzib170G0214 Durio zibethinus HOM05D005686 ORTHO05D006798 6.9e-49 198.0 196 57.7
Oeu000956.1 Olea europaea HOM05D005686 ORTHO05D006798 6.5e-47 191.4 192 55.2
Prupe.1G000800 Prunus persica HOM05D005686 ORTHO05D006798 7.2e-46 188.0 231 46.8
vmacro20894 Vaccinium macrocarpon HOM05D005686 ORTHO05D006798 2.1e-45 186.4 300 41.3
Medtr6g093220 Medicago truncatula HOM05D005686 ORTHO05D006798 7.9e-45 184.5 187 54.0
unitig_899.g15184 Utricularia gibba HOM05D000036 ORTHO05D000095 2.0e-43 179.9 186 50.5
Oeu018307.1 Olea europaea HOM05D005686 ORTHO05D006798 3.7e-42 175.6 196 53.1
Gorai.009G341500 Gossypium raimondii HOM05D005686 ORTHO05D006798 4.8e-42 175.3 153 58.8
Gohir.D05G318500 Gossypium hirsutum HOM05D005686 ORTHO05D006798 5.3e-41 171.8 146 61.0
TPR.G21341 Trifolium pratense HOM05D005686 ORTHO05D006798 6.9e-41 171.4 152 57.2
Rhsim01G0102500 Rhododendron simsii HOM05D005686 ORTHO05D006798 9.1e-41 171.0 343 36.4
Pp3c16_2550 Physcomitrium patens HOM05D005686 ORTHO05D006798 5.9e-40 168.3 200 49.5
MBI13_g46510_MAGBIO Magnolia biondii HOM05D005686 ORTHO05D006798 9.4e-38 161.0 120 66.7
Mapoly0062s0098 Marchantia polymorpha HOM05D005686 ORTHO05D006798 9.4e-38 161.0 196 45.9
Pp3c5_4250 Physcomitrium patens HOM05D005686 ORTHO05D006798 9.4e-38 161.0 197 46.7
SEGI_10084 Sequoiadendron giganteum HOM05D005686 ORTHO05D006798 2.7e-37 159.5 146 53.4
Hma1.2p1_0394F.1_g143240 Hydrangea macrophylla HOM05D005686 ORTHO05D006798 3.9e-36 155.6 123 64.2
SMO164G0027 Selaginella moellendorffii HOM05D005686 ORTHO05D006798 6.7e-36 154.8 190 45.8
Actinidia07538 Actinidia chinensis HOM05D005686 ORTHO05D006798 5.3e-33 145.2 110 67.3
Hund19347 Selenicereus undatus HOM05D005686 ORTHO05D006798 2.0e-32 143.3 195 44.6
Nn8g41269 Nelumbo nucifera HOM05D005686 ORTHO05D006798 6.1e-29 131.7 103 62.1
CDE07G1048 Ceratophyllum demersum HOM05D005686 ORTHO05D006798 1.6e-24 117.1 121 51.2
Haze_21245 Corylus avellana HOM05D005686 ORTHO05D006798 4.5e-24 115.5 98 59.2
MBI13_g08742_MAGBIO Magnolia biondii HOM05D005686 ORTHO05D006798 7.7e-24 114.8 136 50.7
Lju50E1T0 Lonicera japonica HOM05D005686 ORTHO05D006798 2.2e-23 113.2 99 54.5
VMungo0464G1575 Vigna mungo HOM05D005686 ORTHO05D006798 2.5e-22 109.8 104 56.7
Oeu021239.2 Olea europaea HOM05D005686 ORTHO05D006798 3.2e-22 109.4 196 41.3
BolC8t47587H Brassica oleracea HOM05D005686 ORTHO05D006798 2.0e-19 100.1 55 89.1
BcaC07g37307 Brassica carinata HOM05D005686 ORTHO05D006798 3.4e-19 99.4 53 90.6
C08p07420 Brassica napus HOM05D005686 ORTHO05D006798 3.4e-19 99.4 53 90.6
MBI13_g33582_MAGBIO Magnolia biondii HOM05D005686 ORTHO05D006798 8.3e-18 94.7 75 61.3
SMO146G0036 Selaginella moellendorffii HOM05D005686 ORTHO05D006798 8.3e-18 94.7 150 36.0
ClCG04G012860 Citrullus lanatus HOM05D005686 ORTHO05D006798 1.6e-16 90.5 81 58.0
FvH4_1g23212 Fragaria vesca HOM05D005686 ORTHO05D006798 6.5e-15 85.1 90 48.9
FAN26G0690 Fragaria x ananassa HOM05D005686 ORTHO05D006798 6.5e-15 85.1 89 50.6
FAN25G3234 Fragaria x ananassa HOM05D005686 ORTHO05D006798 4.2e-14 82.4 89 46.1
MCO14G409 Micromonas commoda HOM05D005686 ORTHO05D006798 5.5e-14 82.0 166 38.0
FAN17G2013 Fragaria x ananassa HOM05D005686 ORTHO05D006798 2.7e-13 79.7 89 46.1
Cre07.g321850 Chlamydomonas reinhardtii HOM05D005686 ORTHO05D006798 8.0e-13 78.2 195 33.3
SalBow6G6154 Salvia bowleyana HOM05D005686 ORTHO05D006798 1.0e-12 77.8 70 57.1
FvH4_7g03690 Fragaria vesca HOM05D005686 ORTHO05D006798 5.2e-12 75.5 54 64.8
arahy.Tifrunner.gnm1.ann1.U8PUWG Arachis hypogaea HOM05D005611 ORTHO05D006852 2.0e-11 73.6 70 60.0
FAN07G2653 Fragaria x ananassa HOM05D005686 ORTHO05D006798 5.7e-11 72.0 52 63.5
arahy.Tifrunner.gnm1.ann1.11LFFZ Arachis hypogaea HOM05D005686 ORTHO05D006798 7.5e-11 71.6 57 66.7
FAN01G2054 Fragaria x ananassa HOM05D005686 ORTHO05D006798 1.4e-09 67.4 86 47.7
FAN23G2196 Fragaria x ananassa HOM05D005686 ORTHO05D006798 5.4e-09 65.5 49 63.3
SGA_v2.0_scaffold25G11073 Striga asiatica HOM05D005686 ORTHO05D006798 1.0e-07 61.2 107 36.4


User provided reference genes

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