Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p14510 Brassica napus HOM05D012436 ORTHO05D003476 9.3e-215 750.0 389 100.0
BolC3t13894H Brassica oleracea HOM05D012436 ORTHO05D003476 1.9e-175 619.4 393 85.8
BcaB01g04549 Brassica carinata HOM05D012436 ORTHO05D003476 5.0e-168 594.7 457 73.7
BraA03t10548Z Brassica rapa HOM05D012436 ORTHO05D003476 3.4e-164 582.0 395 80.8
A03p12360 Brassica napus HOM05D012436 ORTHO05D003476 1.2e-161 573.5 393 80.9
BcaB01g04480 Brassica carinata HOM05D012436 ORTHO05D003476 5.4e-130 468.4 414 66.9
Sp6g19870 Schrenkiella parvula HOM05D012436 ORTHO05D003476 9.7e-71 271.6 396 47.5
BcaB01g04545 Brassica carinata HOM05D012436 ORTHO05D003476 7.2e-66 255.4 261 61.3
Thhalv10014108m.g Eutrema salsugineum HOM05D012436 ORTHO05D003476 1.5e-50 204.5 393 41.0
AL8G34310 Arabidopsis lyrata HOM05D012436 ORTHO05D003476 5.4e-37 159.5 424 34.2
Carub.0008s1875 Capsella rubella HOM05D012436 ORTHO05D003476 2.0e-36 157.5 391 35.0
CARHR272010 Cardamine hirsuta HOM05D012436 ORTHO05D003476 7.2e-34 149.1 387 34.6
AT5G58210 Arabidopsis thaliana HOM05D012436 ORTHO05D003476 1.4e-32 144.8 399 32.8
THA.LOC104805620 Tarenaya hassleriana HOM05D012436 ORTHO05D003476 2.2e-22 110.9 370 30.0
MSTRG.22259 Avicennia marina HOM05D008057 ORTHO05D003476 2.6e-15 87.4 158 36.7
Medtr6g069010 Medicago truncatula HOM05D008057 ORTHO05D003476 2.6e-15 87.4 376 27.4
Psat1g117960 Pisum sativum HOM05D008057 ORTHO05D003476 1.3e-14 85.1 398 25.6
MBI03_g11904_MAGBIO Magnolia biondii HOM05D008057 ORTHO05D003476 4.1e-13 80.1 369 25.5
Lalb_Chr14g0370111 Lupinus albus HOM05D008057 ORTHO05D003476 5.4e-13 79.7 240 30.8
Cpa.g.sc124.3 Carica papaya HOM05D008057 ORTHO05D003476 2.7e-12 77.4 148 38.5
arahy.Tifrunner.gnm1.ann1.1W7ASM Arachis hypogaea HOM05D008057 ORTHO05D003476 3.5e-12 77.0 396 24.5
Hma1.2p1_0016F.1_g010880 Hydrangea macrophylla HOM05D008057 ORTHO05D003476 3.5e-12 77.0 166 34.3
Nn3g18533 Nelumbo nucifera HOM05D008057 ORTHO05D003476 3.5e-12 77.0 76 50.0
TPR.G31356 Trifolium pratense HOM05D008057 ORTHO05D003476 6.0e-12 76.3 60 58.3
VMungo0464G0225 Vigna mungo HOM05D008057 ORTHO05D003476 7.8e-12 75.9 147 35.4
Lj2g0026608 Lotus japonicus HOM05D008057 ORTHO05D003476 2.3e-11 74.3 369 24.7
Phvul.004G136200 Phaseolus vulgaris HOM05D008057 ORTHO05D003476 2.3e-11 74.3 409 25.2
CsaV3_1G033920 Cucumis sativus L. HOM05D008057 ORTHO05D003476 3.0e-11 73.9 97 42.3
TAR629G2050 Trochodendron aralioides HOM05D008057 ORTHO05D003476 3.0e-11 73.9 80 50.0
Potri.018G151900 Populus trichocarpa HOM05D008057 ORTHO05D003476 3.9e-11 73.6 87 42.5
GSVIVG01024238001 Vitis vinifera HOM05D008057 ORTHO05D003476 3.9e-11 73.6 161 31.7
ATR1126G067 Amborella trichopoda HOM05D006793 ORTHO05D003476 5.1e-11 73.2 80 42.5
Cfa017812 Carpinus fangiana HOM05D008057 ORTHO05D003476 5.1e-11 73.2 351 25.4
Dinv22201 Davidia involucrata HOM05D008057 ORTHO05D003476 6.6e-11 72.8 79 44.3
Lsat_1_v5_gn_8_540 Lactuca sativa HOM05D008057 ORTHO05D003476 6.6e-11 72.8 107 36.4
TAR311G0002 Trochodendron aralioides HOM05D008057 ORTHO05D003476 6.6e-11 72.8 74 48.6
Duzib068G0937 Durio zibethinus HOM05D008057 ORTHO05D003476 1.1e-10 72.0 363 25.6
Sabra18G0127300 Salix brachista HOM05D008057 ORTHO05D003476 1.1e-10 72.0 85 41.2
arahy.Tifrunner.gnm1.ann1.RQNS35 Arachis hypogaea HOM05D008057 ORTHO05D003476 1.5e-10 71.6 401 23.7
Glyma.09G160700 Glycine max HOM05D008057 ORTHO05D003476 1.9e-10 71.2 116 36.2
PGR044G1600 Punica granatum HOM05D008057 ORTHO05D003476 1.9e-10 71.2 76 50.0
MELO3C020667.2 Cucumis melo HOM05D008057 ORTHO05D003476 2.5e-10 70.9 55 60.0
Glyma.16G210200 Glycine max HOM05D008057 ORTHO05D003476 2.5e-10 70.9 85 44.7
Sopen03g029780 Solanum pennellii HOM05D008057 ORTHO05D003476 2.5e-10 70.9 79 40.5
SGA_v2.0_scaffold14G06996 Striga asiatica HOM05D008057 ORTHO05D003476 3.3e-10 70.5 120 32.5
Gohir.A03G090600 Gossypium hirsutum HOM05D008057 ORTHO05D003476 4.3e-10 70.1 252 29.4
Gohir.D02G118700 Gossypium hirsutum HOM05D008057 ORTHO05D003476 4.3e-10 70.1 246 28.9
Gorai.005G135100 Gossypium raimondii HOM05D008057 ORTHO05D003476 4.3e-10 70.1 361 24.1
Zm00001eb137780 Zea mays HOM05D006793 ORTHO05D003476 4.3e-10 70.1 118 36.4
Cc00_g01550 Coffea canephora HOM05D008057 ORTHO05D003476 5.6e-10 69.7 364 22.3
Nitab4.5_0008182g0020 Nicotiana tabacum HOM05D008057 ORTHO05D003476 5.6e-10 69.7 112 35.7
Prupe.8G056400 Prunus persica HOM05D015681 ORTHO05D003476 5.6e-10 69.7 106 39.6
ClCG03G001720 Citrullus lanatus HOM05D008057 ORTHO05D003476 7.3e-10 69.3 146 31.5
Migut.N02713 Erythranthe guttata HOM05D008057 ORTHO05D003476 7.3e-10 69.3 171 32.7
TWI81G0899 Tripterygium wilfordii HOM05D008057 ORTHO05D003476 7.3e-10 69.3 371 24.0
Ciclev10020800m.g Citrus clementina HOM05D008057 ORTHO05D003476 9.5e-10 68.9 367 22.9
Nitab4.5_0009307g0060 Nicotiana tabacum HOM05D008057 ORTHO05D003476 9.5e-10 68.9 162 31.5
Rhsim10G0138900 Rhododendron simsii HOM05D008057 ORTHO05D003476 9.5e-10 68.9 78 46.2
unitig_746.g26880 Utricularia gibba HOM05D008057 ORTHO05D003476 9.5e-10 68.9 92 43.5
Sed0004109 Sechium edule HOM05D008057 ORTHO05D003476 1.2e-09 68.6 70 47.1
PGSC0003DMG401015209 Solanum tuberosum HOM05D008057 ORTHO05D003476 1.2e-09 68.6 79 39.2
COL.COLO4_33681 Corchorus olitorius HOM05D002656 ORTHO05D003062 1.6e-09 68.2 390 24.1
Eucgr.K02337 Eucalyptus grandis HOM05D008057 ORTHO05D003476 1.6e-09 68.2 103 36.9
SEGI_29881 Sequoiadendron giganteum HOM05D006793 ORTHO05D003476 1.6e-09 68.2 70 45.7
Solyc03g019840.4 Solanum lycopersicum HOM05D008057 ORTHO05D003476 1.6e-09 68.2 79 39.2
CiPaw.16G075800 Carya illinoinensis HOM05D008057 ORTHO05D003476 2.1e-09 67.8 67 50.7
Hund06726 Selenicereus undatus HOM05D008057 ORTHO05D003476 2.1e-09 67.8 77 46.8
CDE04G2158 Ceratophyllum demersum HOM05D008057 ORTHO05D003476 2.8e-09 67.4 96 37.5
Zm00001eb410830 Zea mays HOM05D006793 ORTHO05D003476 2.8e-09 67.4 53 52.8
MD10G1047400 Malus domestica HOM05D015681 ORTHO05D003476 4.7e-09 66.6 103 40.8
Atru.chr9.28 Acer truncatum HOM05D008057 ORTHO05D003476 1.1e-08 65.5 116 35.3
QL10p035701 Quercus lobata HOM05D008057 ORTHO05D003476 1.1e-08 65.5 138 34.8
Aqoxy3G04343 Aquilegia oxysepala HOM05D008057 ORTHO05D003476 1.4e-08 65.1 89 41.6
HanXRQChr08g0226101 Helianthus annuus HOM05D008057 ORTHO05D003476 1.4e-08 65.1 68 45.6
RcHm_v2.0_Chr7g0218101 Rosa chinensis HOM05D015681 ORTHO05D003476 1.4e-08 65.1 52 57.7
AUR62002713 Chenopodium quinoa HOM05D006793 ORTHO05D003476 1.8e-08 64.7 264 24.2
COL.COLO4_32868 Corchorus olitorius HOM05D006793 ORTHO05D003476 1.8e-08 64.7 54 48.1
ECA238G3554 Erigeron canadensis HOM05D006793 ORTHO05D003476 1.8e-08 64.7 54 51.9
Os02g0638000 Oryza sativa ssp. japonica HOM05D008057 ORTHO05D003476 1.8e-08 64.7 83 41.0
Lsat_1_v5_gn_2_103100 Lactuca sativa HOM05D006793 ORTHO05D003476 2.3e-08 64.3 82 41.5
AagrBONN_evm.TU.Sc2ySwM_369.432 Anthoceros agrestis HOM05D008307 ORTHO05D010374 3.1e-08 63.9 70 47.1
DCAR_014755 Daucus carota HOM05D008057 ORTHO05D003476 3.1e-08 63.9 170 30.6
Os12g0528000 Oryza sativa ssp. japonica HOM05D006793 ORTHO05D003476 3.1e-08 63.9 101 38.6
Psat6g174040 Pisum sativum HOM05D006793 ORTHO05D003476 4.0e-08 63.5 50 54.0
Sc12g0007990 Simmondsia chinensis HOM05D008057 ORTHO05D003476 4.0e-08 63.5 52 59.6
HPP92_027826 Vanilla planifolia HOM05D006793 ORTHO05D003476 4.0e-08 63.5 349 22.9
Aqoxy2G01557 Aquilegia oxysepala HOM05D006793 ORTHO05D003476 5.2e-08 63.2 117 32.5
HPP92_025600 Vanilla planifolia HOM05D061565 ORTHO05D003476 5.2e-08 63.2 67 43.3
Oeu050291.1 Olea europaea HOM05D008057 ORTHO05D003476 6.8e-08 62.8 64 50.0
Sp5g10100 Schrenkiella parvula HOM05D006793 ORTHO05D003476 6.8e-08 62.8 105 33.3
Sc20g0001440 Simmondsia chinensis HOM05D006793 ORTHO05D003476 6.8e-08 62.8 65 46.2
Atru.chr11.746 Acer truncatum HOM05D006793 ORTHO05D003476 8.9e-08 62.4 50 50.0
Oeu060293.1 Olea europaea HOM05D006793 ORTHO05D003476 8.9e-08 62.4 63 44.4
AUR62033080 Chenopodium quinoa HOM05D008057 ORTHO05D003476 1.2e-07 62.0 173 28.3
Ciclev10031613m.g Citrus clementina HOM05D006793 ORTHO05D003476 1.2e-07 62.0 50 52.0
Nitab4.5_0006383g0010 Nicotiana tabacum HOM05D006793 ORTHO05D003476 1.2e-07 62.0 76 39.5
Peaxi162Scf00171g00028 Petunia axillaris HOM05D008057 ORTHO05D003476 1.2e-07 62.0 238 26.9
CANSAT56G4476 Cannabis sativa HOM05D006793 ORTHO05D003476 1.5e-07 61.6 74 41.9
AUR62030173 Chenopodium quinoa HOM05D006793 ORTHO05D003476 1.5e-07 61.6 50 46.0
FAN08G2522 Fragaria x ananassa HOM05D015681 ORTHO05D003476 1.5e-07 61.6 52 53.8
Gohir.A01G128900 Gossypium hirsutum HOM05D006793 ORTHO05D003476 1.5e-07 61.6 54 46.3
Gohir.D01G118500 Gossypium hirsutum HOM05D006793 ORTHO05D003476 1.5e-07 61.6 54 46.3
Gorai.002G144500 Gossypium raimondii HOM05D006793 ORTHO05D003476 1.5e-07 61.6 54 46.3
Lalb_Chr21g0313091 Lupinus albus HOM05D006793 ORTHO05D003476 1.5e-07 61.6 50 50.0
Sed0002498 Sechium edule HOM05D008057 ORTHO05D003476 1.5e-07 61.6 114 33.3
Thecc.10G090800 Theobroma cacao HOM05D006793 ORTHO05D003476 1.5e-07 61.6 50 48.0
CDE03G0520 Ceratophyllum demersum HOM05D048142 ORTHO05D003476 2.0e-07 61.2 103 34.0
Dinv20859 Davidia involucrata HOM05D006793 ORTHO05D003476 2.0e-07 61.2 50 50.0
Dinv31270 Davidia involucrata HOM05D006793 ORTHO05D003476 2.0e-07 61.2 50 50.0
Migut.F01893 Erythranthe guttata HOM05D006793 ORTHO05D003476 2.0e-07 61.2 50 50.0
Nn6g35167 Nelumbo nucifera HOM05D006793 ORTHO05D003476 2.0e-07 61.2 54 48.1
SMO165G0083 Selaginella moellendorffii HOM05D008307 ORTHO05D010374 2.0e-07 61.2 52 55.8
TAR476G0002 Trochodendron aralioides HOM05D006793 ORTHO05D003476 2.0e-07 61.2 70 41.4
TAR633G2614 Trochodendron aralioides HOM05D006793 ORTHO05D009315 2.0e-07 61.2 70 41.4
ECA233G4523 Erigeron canadensis HOM05D008057 ORTHO05D003476 2.6e-07 60.8 144 29.2
Nn2g13905 Nelumbo nucifera HOM05D006793 ORTHO05D003476 2.6e-07 60.8 112 32.1
EL10Ac9g22929 Beta vulgaris HOM05D008057 ORTHO05D003476 3.4e-07 60.5 69 46.4
MBI17_g07069_MAGBIO Magnolia biondii HOM05D006793 ORTHO05D003476 3.4e-07 60.5 157 31.2
PSO339G4934 Papaver somniferum HOM05D006793 ORTHO05D003476 3.4e-07 60.5 360 24.2
THA.LOC104824314 Tarenaya hassleriana HOM05D006793 ORTHO05D003476 3.4e-07 60.5 54 44.4
Hma1.2p1_0454F.1_g156300 Hydrangea macrophylla HOM05D006793 ORTHO05D003476 4.4e-07 60.1 70 40.0
Lalb_Chr02g0151171 Lupinus albus HOM05D006793 ORTHO05D003476 4.4e-07 60.1 50 48.0
PSO801G0244 Papaver somniferum HOM05D006793 ORTHO05D003476 4.4e-07 60.1 328 25.3
Potri.010G231900 Populus trichocarpa HOM05D006793 ORTHO05D003476 4.4e-07 60.1 65 41.5
Sabra10G0179700 Salix brachista HOM05D006793 ORTHO05D003476 4.4e-07 60.1 50 50.0
Actinidia06714 Actinidia chinensis HOM05D006793 ORTHO05D003476 5.8e-07 59.7 144 32.6
Phvul.007G141300 Phaseolus vulgaris HOM05D006793 ORTHO05D003476 5.8e-07 59.7 50 48.0
PGR142G3005 Punica granatum HOM05D006793 ORTHO05D003476 5.8e-07 59.7 82 40.2
QL08p052921 Quercus lobata HOM05D006793 ORTHO05D003476 5.8e-07 59.7 50 48.0
SalBow4G0791 Salvia bowleyana HOM05D006793 ORTHO05D003476 5.8e-07 59.7 54 46.3
VMungo0720G1705 Vigna mungo HOM05D006793 ORTHO05D003476 5.8e-07 59.7 50 48.0
AL5G32750 Arabidopsis lyrata HOM05D006793 ORTHO05D003476 7.6e-07 59.3 81 37.0
BcaC02g09274 Brassica carinata HOM05D006793 ORTHO05D003476 7.6e-07 59.3 107 33.6
C04p40750 Brassica napus HOM05D000992 ORTHO05D006704 7.6e-07 59.3 107 33.6
BolC4t25659H Brassica oleracea HOM05D000992 ORTHO05D006704 7.6e-07 59.3 107 33.6
CiPaw.01G264600 Carya illinoinensis HOM05D006793 ORTHO05D003476 7.6e-07 59.3 87 36.8
MD02G1241700 Malus domestica HOM05D006793 ORTHO05D003476 7.6e-07 59.3 50 48.0
SGA_v2.0_scaffold28G11776 Striga asiatica HOM05D008057 ORTHO05D003476 7.6e-07 59.3 155 29.7
arahy.Tifrunner.gnm1.ann1.BT04C1 Arachis hypogaea HOM05D006793 ORTHO05D003476 9.9e-07 58.9 50 46.0
CANSAT80G0398 Cannabis sativa HOM05D008057 ORTHO05D003476 9.9e-07 58.9 71 42.3
PSO782G0732 Papaver somniferum HOM05D045975 ORTHO05D003476 9.9e-07 58.9 73 38.4
TPR.G37771 Trifolium pratense HOM05D006793 ORTHO05D003476 9.9e-07 58.9 50 46.0
TAR636G1084 Trochodendron aralioides HOM05D006793 ORTHO05D003476 9.9e-07 58.9 79 39.2
EL10Ac8g19653 Beta vulgaris HOM05D006793 ORTHO05D003476 1.3e-06 58.5 50 46.0
Eucgr.G02731 Eucalyptus grandis HOM05D006793 ORTHO05D003476 1.3e-06 58.5 81 39.5
Glyma.20G190600 Glycine max HOM05D006793 ORTHO05D003476 1.3e-06 58.5 50 48.0
Lsat_1_v5_gn_8_22741 Lactuca sativa HOM05D006793 ORTHO05D003476 1.3e-06 58.5 79 39.2
Medtr1g090853 Medicago truncatula HOM05D006793 ORTHO05D003476 1.3e-06 58.5 50 42.0
Zm00001eb248340 Zea mays HOM05D046263 ORTHO05D003476 1.3e-06 58.5 118 31.4
MSTRG.404 Avicennia marina HOM05D006793 ORTHO05D003476 1.7e-06 58.2 63 44.4
ClCG08G007950 Citrullus lanatus HOM05D006793 ORTHO05D003476 1.7e-06 58.2 50 46.0
Glyma.10G199900 Glycine max HOM05D006793 ORTHO05D003476 1.7e-06 58.2 50 48.0
Manes.07G093300 Manihot esculenta HOM05D006793 ORTHO05D003476 1.7e-06 58.2 75 38.7
vmacro12841 Vaccinium macrocarpon HOM05D008057 ORTHO05D003476 1.7e-06 58.2 81 38.3
AT3G52170 Arabidopsis thaliana HOM05D006793 ORTHO05D003476 2.2e-06 57.8 295 24.1
arahy.Tifrunner.gnm1.ann1.U5ZVAW Arachis hypogaea HOM05D006793 ORTHO05D003476 2.2e-06 57.8 50 44.0
Cfa001770 Carpinus fangiana HOM05D006793 ORTHO05D003476 2.2e-06 57.8 113 32.7
Haze_16786 Corylus avellana HOM05D006793 ORTHO05D003476 2.2e-06 57.8 113 32.7
DCAR_019058 Daucus carota HOM05D006793 ORTHO05D003476 2.2e-06 57.8 203 24.1
TWI38G2135 Tripterygium wilfordii HOM05D006793 ORTHO05D003476 2.2e-06 57.8 50 46.0
A04p07200 Brassica napus HOM05D006793 ORTHO05D003476 2.9e-06 57.4 211 26.5
BraA04t16415Z Brassica rapa HOM05D000992 ORTHO05D006704 2.9e-06 57.4 211 26.5
Manes.10G053400 Manihot esculenta HOM05D006793 ORTHO05D003476 2.9e-06 57.4 107 31.8
GSVIVG01005025001 Vitis vinifera HOM05D006793 ORTHO05D003476 2.9e-06 57.4 126 33.3
A03p48750 Brassica napus HOM05D006793 ORTHO05D003476 3.7e-06 57.0 87 36.8
CARHR161930 Cardamine hirsuta HOM05D006793 ORTHO05D003476 3.7e-06 57.0 50 42.0
Lj5g0011528 Lotus japonicus HOM05D006793 ORTHO05D003476 3.7e-06 57.0 140 26.4
Prupe.2G095200 Prunus persica HOM05D006793 ORTHO05D003476 3.7e-06 57.0 50 46.0
AUR62042766 Chenopodium quinoa HOM05D008057 ORTHO05D003476 4.9e-06 56.6 276 21.4
MELO3C019853.2 Cucumis melo HOM05D006793 ORTHO05D003476 4.9e-06 56.6 130 30.0
Nitab4.5_0000593g0350 Nicotiana tabacum HOM05D006793 ORTHO05D003476 4.9e-06 56.6 164 26.2
Pp3c6_16530 Physcomitrium patens HOM05D008307 ORTHO05D010374 4.9e-06 56.6 60 43.3
Sabra08G0019600 Salix brachista HOM05D006793 ORTHO05D003476 4.9e-06 56.6 50 48.0
BraA03t13975Z Brassica rapa HOM05D006793 ORTHO05D003476 6.4e-06 56.2 83 37.3
Ca_10462_v3 Cicer arietinum L. HOM05D001977 ORTHO05D002246 6.4e-06 56.2 212 25.0
Duzib128G0427 Durio zibethinus HOM05D006793 ORTHO05D003476 6.4e-06 56.2 353 22.4
ECA233G3433 Erigeron canadensis HOM05D006793 ORTHO05D003476 6.4e-06 56.2 104 33.7
Mapoly0004s0145 Marchantia polymorpha HOM05D008307 ORTHO05D010374 6.4e-06 56.2 128 31.2
Ah.09g232210 Amaranthus hybridus HOM05D002613 ORTHO05D003140 8.4e-06 55.8 70 37.1
Cpa.g.sc128.73 Carica papaya HOM05D006793 ORTHO05D003476 8.4e-06 55.8 99 37.4
Cc02_g10490 Coffea canephora HOM05D006793 ORTHO05D003476 8.4e-06 55.8 282 26.6
Sed0017585 Sechium edule HOM05D006793 ORTHO05D003476 8.4e-06 55.8 50 44.0
Solyc11g007850.2 Solanum lycopersicum HOM05D006793 ORTHO05D003476 8.4e-06 55.8 291 23.0


User provided reference genes

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