Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p14290 Brassica napus HOM05D002034 ORTHO05D004251 2.6e-59 231.9 117 100.0
A03p12200 Brassica napus HOM05D002034 ORTHO05D004251 2.1e-53 212.2 108 100.0
BraA03t10531Z Brassica rapa HOM05D002034 ORTHO05D004251 2.1e-53 212.2 108 100.0
BolC3t13874H Brassica oleracea HOM05D002034 ORTHO05D004251 1.3e-50 203.0 108 95.4
Thhalv10012586m.g Eutrema salsugineum HOM05D002034 ORTHO05D004251 1.9e-38 162.5 109 81.7
Carub.0008s1910 Capsella rubella HOM05D002034 ORTHO05D004251 6.1e-37 157.5 109 79.8
BcaB01g04520 Brassica carinata HOM05D002034 ORTHO05D004251 1.0e-36 156.8 109 80.7
AL8G34750 Arabidopsis lyrata HOM05D002034 ORTHO05D004251 4.0e-36 154.8 109 79.8
BraA10t43651Z Brassica rapa HOM05D002034 ORTHO05D004251 4.1e-33 144.8 109 75.2
Sp6g20200 Schrenkiella parvula HOM05D002034 ORTHO05D004251 1.2e-32 143.3 109 74.3
BolC9t57903H Brassica oleracea HOM05D002034 ORTHO05D004251 2.7e-32 142.1 109 74.3
BcaB08g36187 Brassica carinata HOM05D002034 ORTHO05D004251 4.5e-32 141.4 109 73.4
C09p50470 Brassica napus HOM05D002034 ORTHO05D004251 1.0e-31 140.2 109 73.4
AT5G58510 Arabidopsis thaliana HOM05D002034 ORTHO05D004251 1.5e-30 136.3 109 71.6
Aa31LG11G290 Aethionema arabicum HOM05D002034 ORTHO05D004251 5.6e-30 134.4 108 67.6
A10p15750 Brassica napus HOM05D002034 ORTHO05D004251 6.1e-29 131.0 134 61.2
THA.LOC104799388 Tarenaya hassleriana HOM05D002034 ORTHO05D004251 6.0e-24 114.4 109 60.6
CARHR272340 Cardamine hirsuta HOM05D002034 ORTHO05D004251 1.4e-20 103.2 75 80.0
TWI31G1212 Tripterygium wilfordii HOM05D002034 ORTHO05D004251 1.1e-12 77.0 116 43.1
Cpa.g.sc2.386 Carica papaya HOM05D002034 ORTHO05D004251 1.4e-12 76.6 63 65.1
Gohir.A03G026800 Gossypium hirsutum HOM05D002034 ORTHO05D004251 3.1e-12 75.5 116 39.7
Ciclev10027766m.g Citrus clementina HOM05D002034 ORTHO05D004251 5.2e-12 74.7 115 44.3
Prupe.6G051700 Prunus persica HOM05D002034 ORTHO05D004251 6.8e-12 74.3 117 46.2
Thecc.09G354800 Theobroma cacao HOM05D002034 ORTHO05D004251 6.8e-12 74.3 113 41.6
Duzib150G0116 Durio zibethinus HOM05D002034 ORTHO05D004251 8.9e-12 73.9 115 45.2
Duzib168G1938 Durio zibethinus HOM05D002034 ORTHO05D004251 1.2e-11 73.6 113 42.5
Sabra09G0057900 Salix brachista HOM05D002034 ORTHO05D004251 1.2e-11 73.6 105 46.7
MD11G1065500 Malus domestica HOM05D002034 ORTHO05D004251 1.5e-11 73.2 115 42.6
Lj6g0001278 Lotus japonicus HOM05D002034 ORTHO05D004251 3.4e-11 72.0 41 75.6
Potri.009G076000 Populus trichocarpa HOM05D002034 ORTHO05D004251 4.4e-11 71.6 83 50.6
Eucgr.B02225 Eucalyptus grandis HOM05D002034 ORTHO05D004251 9.9e-11 70.5 106 47.2
Gorai.003G148700 Gossypium raimondii HOM05D002034 ORTHO05D004251 9.9e-11 70.5 116 40.5
RcHm_v2.0_Chr5g0070931 Rosa chinensis HOM05D002034 ORTHO05D004251 9.9e-11 70.5 107 44.9
Atru.chr3.4154 Acer truncatum HOM05D002034 ORTHO05D004251 1.7e-10 69.7 83 50.6
Gohir.D13G239600 Gossypium hirsutum HOM05D002034 ORTHO05D004251 1.7e-10 69.7 104 44.2
CANSAT54G3012 Cannabis sativa HOM05D002034 ORTHO05D004251 2.9e-10 68.9 111 41.4
CiPaw.13G072000 Carya illinoinensis HOM05D002034 ORTHO05D004251 2.9e-10 68.9 61 62.3
FvH4_3g39400 Fragaria vesca HOM05D002034 ORTHO05D004251 2.9e-10 68.9 116 43.1
FAN11G3897 Fragaria x ananassa HOM05D002034 ORTHO05D004251 2.9e-10 68.9 116 43.1
Gorai.013G270500 Gossypium raimondii HOM05D002034 ORTHO05D004251 2.9e-10 68.9 99 45.5
Lalb_Chr04g0252081 Lupinus albus HOM05D002034 ORTHO05D004251 2.9e-10 68.9 76 52.6
Glyma.11G165900 Glycine max HOM05D002034 ORTHO05D004251 3.7e-10 68.6 96 45.8
Gohir.A13G234000 Gossypium hirsutum HOM05D002034 ORTHO05D004251 3.7e-10 68.6 99 45.5
Psat5g155480 Pisum sativum HOM05D002034 ORTHO05D004251 4.9e-10 68.2 102 47.1
Lalb_Chr15g0083131 Lupinus albus HOM05D002034 ORTHO05D004251 1.9e-09 66.2 83 49.4
Phvul.006G072400 Phaseolus vulgaris HOM05D002034 ORTHO05D004251 1.9e-09 66.2 81 49.4
VMungo0540G1016 Vigna mungo HOM05D002034 ORTHO05D004251 2.4e-09 65.9 102 42.2
FAN16G1479 Fragaria x ananassa HOM05D002034 ORTHO05D004251 3.2e-09 65.5 106 43.4
Glyma.18G058700 Glycine max HOM05D002034 ORTHO05D004251 4.1e-09 65.1 96 43.8
Gohir.D03G141700 Gossypium hirsutum HOM05D002034 ORTHO05D004251 4.1e-09 65.1 142 33.1
arahy.Tifrunner.gnm1.ann1.WA30K5 Arachis hypogaea HOM05D002034 ORTHO05D004251 7.1e-09 64.3 97 43.3
Ca_14990_v3 Cicer arietinum L. HOM05D002034 ORTHO05D004251 7.1e-09 64.3 63 55.6
Ca_30101_v3 Cicer arietinum L. HOM05D002034 ORTHO05D004251 7.1e-09 64.3 63 55.6
FAN25G3060 Fragaria x ananassa HOM05D002034 ORTHO05D004251 7.1e-09 64.3 116 43.1
PGR102G2830 Punica granatum HOM05D002034 ORTHO05D004251 2.1e-08 62.8 86 47.7
QL01p039781 Quercus lobata HOM05D002034 ORTHO05D004251 2.1e-08 62.8 122 37.7
TPR.G32915 Trifolium pratense HOM05D002034 ORTHO05D004251 2.1e-08 62.8 76 51.3
Manes.02G215950 Manihot esculenta HOM05D002034 ORTHO05D004251 3.5e-08 62.0 106 42.5
arahy.Tifrunner.gnm1.ann1.RZ6BDN Arachis hypogaea HOM05D002034 ORTHO05D004251 7.8e-08 60.8 103 42.7
Cfa011748 Carpinus fangiana HOM05D002034 ORTHO05D004251 7.8e-08 60.8 46 58.7
Haze_24388 Corylus avellana HOM05D002034 ORTHO05D004251 7.8e-08 60.8 116 37.9
Medtr3g465600 Medicago truncatula HOM05D002034 ORTHO05D004251 1.7e-07 59.7 105 40.0
CAN.G1095.17 Capsicum annuum HOM05D002034 ORTHO05D004251 2.3e-07 59.3 34 70.6
arahy.Tifrunner.gnm1.ann1.H18R60 Arachis hypogaea HOM05D002034 ORTHO05D004251 3.0e-07 58.9 100 40.0
arahy.Tifrunner.gnm1.ann1.Z7E5WK Arachis hypogaea HOM05D002034 ORTHO05D004251 3.0e-07 58.9 100 40.0
COL.COLO4_11121 Corchorus olitorius HOM05D002034 ORTHO05D004251 3.0e-07 58.9 113 36.3
Sed0002046 Sechium edule HOM05D002034 ORTHO05D004251 3.0e-07 58.9 96 39.6
vmacro02934 Vaccinium macrocarpon HOM05D002034 ORTHO05D004251 3.9e-07 58.5 120 38.3
Sc12g0000270 Simmondsia chinensis HOM05D002034 ORTHO05D004251 5.1e-07 58.2 108 37.0
CsaV3_1G036460 Cucumis sativus L. HOM05D002034 ORTHO05D004251 8.6e-07 57.4 113 38.1
Ah.15g096250 Amaranthus hybridus HOM05D002034 ORTHO05D004251 1.1e-06 57.0 56 53.6
Cc01_g14670 Coffea canephora HOM05D002034 ORTHO05D004251 1.9e-06 56.2 45 60.0
MELO3C020522.2 Cucumis melo HOM05D002034 ORTHO05D004251 1.9e-06 56.2 114 38.6
TAR357G0005 Trochodendron aralioides HOM05D002034 ORTHO05D004251 1.9e-06 56.2 84 44.0
Hma1.2p1_0841F.1_g226850 Hydrangea macrophylla HOM05D002034 ORTHO05D004251 2.5e-06 55.8 110 33.6
SHI19193 Sapria himalayana HOM05D002034 ORTHO05D004251 2.5e-06 55.8 51 58.8
TAR369G0522 Trochodendron aralioides HOM05D002034 ORTHO05D004251 3.3e-06 55.5 108 36.1
AUR62036251 Chenopodium quinoa HOM05D002034 ORTHO05D004251 4.3e-06 55.1 81 44.4
AUR62036252 Chenopodium quinoa HOM05D002034 ORTHO05D004251 4.3e-06 55.1 81 44.4
Dinv28678 Davidia involucrata HOM05D002034 ORTHO05D004251 7.3e-06 54.3 75 40.0
GSVIVG01024678001 Vitis vinifera HOM05D002034 ORTHO05D004251 7.3e-06 54.3 126 35.7
AUR62009695 Chenopodium quinoa HOM05D002034 ORTHO05D004251 9.5e-06 53.9 81 43.2


User provided reference genes

Program Settings