Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p14190 Brassica napus HOM05D004149 ORTHO05D005028 2.4e-122 442.2 228 100.0
BolC3t13864H Brassica oleracea HOM05D004149 ORTHO05D005028 2.5e-119 432.2 228 95.6
BcaB01g04503 Brassica carinata HOM05D004149 ORTHO05D005028 3.8e-115 418.3 228 93.9
A03p12090 Brassica napus HOM05D004149 ORTHO05D005028 8.4e-115 417.2 228 96.1
BraA03t10521Z Brassica rapa HOM05D004149 ORTHO05D005028 8.4e-115 417.2 228 96.1
Thhalv10014590m.g Eutrema salsugineum HOM05D004149 ORTHO05D005028 3.3e-111 405.2 228 88.2
BraA10t43671Z Brassica rapa HOM05D004149 ORTHO05D005028 9.6e-111 403.7 228 86.4
A10p15620 Brassica napus HOM05D004149 ORTHO05D005028 1.3e-110 403.3 228 86.4
C09p50720 Brassica napus HOM05D004149 ORTHO05D005028 6.2e-110 401.0 228 86.8
CARHR272500 Cardamine hirsuta HOM05D004149 ORTHO05D005028 1.8e-109 399.4 228 86.4
Sp6g20340 Schrenkiella parvula HOM05D004149 ORTHO05D005028 4.0e-109 398.3 228 87.3
BolC9t57922H Brassica oleracea HOM05D004149 ORTHO05D005028 7.6e-108 394.0 233 84.5
Carub.0008s1926 Capsella rubella HOM05D004149 ORTHO05D005028 9.9e-108 393.7 223 87.0
AL8G34910 Arabidopsis lyrata HOM05D004149 ORTHO05D005028 1.6e-102 376.3 226 86.3
AT5G58640 Arabidopsis thaliana HOM05D004149 ORTHO05D005028 5.3e-101 371.3 227 86.3
Thhalv10010643m.g Eutrema salsugineum HOM05D004149 ORTHO05D005028 2.4e-98 362.5 228 79.8
BcaC04g19825 Brassica carinata HOM05D004149 ORTHO05D005028 3.1e-93 345.5 199 85.9
Aa31LG4G16110 Aethionema arabicum HOM05D004149 ORTHO05D005028 1.9e-90 336.3 251 68.1
AT3G47300 Arabidopsis thaliana HOM05D004149 ORTHO05D005028 3.2e-90 335.5 228 74.6
AL5G26480 Arabidopsis lyrata HOM05D004149 ORTHO05D005028 1.1e-85 320.5 228 74.1
Sp5g14550 Schrenkiella parvula HOM05D004149 ORTHO05D005028 4.9e-83 311.6 228 69.3
Potri.016G117600 Populus trichocarpa HOM05D004149 ORTHO05D005028 1.6e-78 296.6 222 65.3
Sopen09g001490 Solanum pennellii HOM05D004149 ORTHO05D005028 6.3e-78 294.7 225 64.9
ClCG10G022210 Citrullus lanatus HOM05D004149 ORTHO05D005028 8.2e-78 294.3 233 63.1
Sabra16G0113700 Salix brachista HOM05D004149 ORTHO05D005028 8.2e-78 294.3 222 64.9
Duzib168G0285 Durio zibethinus HOM05D004149 ORTHO05D005028 1.1e-77 293.9 232 63.4
Nitab4.5_0000261g0010 Nicotiana tabacum HOM05D004149 ORTHO05D005028 1.1e-77 293.9 225 64.0
Lsat_1_v5_gn_5_149460 Lactuca sativa HOM05D004149 ORTHO05D005028 1.4e-77 293.5 226 62.4
Nn2g10866 Nelumbo nucifera HOM05D004149 ORTHO05D005028 9.0e-77 290.8 226 63.7
Cc06_g01230 Coffea canephora HOM05D004149 ORTHO05D005028 1.5e-76 290.0 225 60.4
MELO3C009158.2 Cucumis melo HOM05D004149 ORTHO05D005028 1.5e-76 290.0 230 62.2
QL07p035253 Quercus lobata HOM05D004149 ORTHO05D005028 1.5e-76 290.0 227 62.1
CSS0009567 Camellia sinensis var. sinensis HOM05D004149 ORTHO05D005028 2.0e-76 289.7 223 65.9
Lj3A951T30 Lonicera japonica HOM05D004149 ORTHO05D005028 2.0e-76 289.7 257 58.0
Thecc.09G299600 Theobroma cacao HOM05D004149 ORTHO05D005028 2.6e-76 289.3 222 68.5
PGSC0003DMG400004449 Solanum tuberosum HOM05D004149 ORTHO05D005028 4.5e-76 288.5 225 64.4
COL.COLO4_19178 Corchorus olitorius HOM05D004149 ORTHO05D005028 5.9e-76 288.1 217 69.1
Migut.J00152 Erythranthe guttata HOM05D004149 ORTHO05D005028 1.3e-75 287.0 226 61.9
Eucgr.B02246 Eucalyptus grandis HOM05D004149 ORTHO05D005028 1.3e-75 287.0 225 63.1
CAN.G740.4 Capsicum annuum HOM05D004149 ORTHO05D005028 1.7e-75 286.6 226 63.3
TAR633G0450 Trochodendron aralioides HOM05D004149 ORTHO05D005028 1.7e-75 286.6 225 65.3
Nitab4.5_0002020g0030 Nicotiana tabacum HOM05D004149 ORTHO05D005028 3.8e-75 285.4 225 64.0
Haze_21017 Corylus avellana HOM05D004149 ORTHO05D005028 6.5e-75 284.6 225 65.3
Ciclev10029239m.g Citrus clementina HOM05D004149 ORTHO05D005028 8.5e-75 284.3 225 65.8
CsaV3_3G033680 Cucumis sativus L. HOM05D004149 ORTHO05D005028 8.5e-75 284.3 230 60.9
Gorai.006G105900 Gossypium raimondii HOM05D004149 ORTHO05D005028 8.5e-75 284.3 232 61.6
Sed0021100 Sechium edule HOM05D004149 ORTHO05D005028 8.5e-75 284.3 226 62.8
SGA_v2.0_scaffold75G25021 Striga asiatica HOM05D004149 ORTHO05D005028 8.5e-75 284.3 229 61.6
Cfa017194 Carpinus fangiana HOM05D004149 ORTHO05D005028 1.4e-74 283.5 225 65.3
GSVIVG01011172001 Vitis vinifera HOM05D004149 ORTHO05D005028 1.4e-74 283.5 234 59.0
arahy.Tifrunner.gnm1.ann1.JHY1NE Arachis hypogaea HOM05D004149 ORTHO05D005028 2.5e-74 282.7 225 62.7
Haze_24342 Corylus avellana HOM05D004149 ORTHO05D005028 3.2e-74 282.3 225 63.6
Actinidia11575 Actinidia chinensis HOM05D004149 ORTHO05D005028 5.5e-74 281.6 227 62.6
LjContig00155g0022980 Lotus japonicus HOM05D004149 ORTHO05D005028 5.5e-74 281.6 224 66.5
Gohir.D09G089700 Gossypium hirsutum HOM05D004149 ORTHO05D005028 9.4e-74 280.8 230 61.3
unitig_578.g15899 Utricularia gibba HOM05D004149 ORTHO05D005028 9.4e-74 280.8 226 58.8
Hma1.2p1_0479F.1_g161390 Hydrangea macrophylla HOM05D004149 ORTHO05D005028 1.2e-73 280.4 223 61.0
Medtr5g071240 Medicago truncatula HOM05D004149 ORTHO05D005028 1.2e-73 280.4 229 64.2
VMungo0331G2046 Vigna mungo HOM05D004149 ORTHO05D005028 2.7e-73 279.3 225 61.8
HanXRQChr13g0406611 Helianthus annuus HOM05D004149 ORTHO05D005028 3.6e-73 278.9 225 60.9
MD03G1067200 Malus domestica HOM05D004149 ORTHO05D005028 3.6e-73 278.9 224 63.4
Phvul.010G076100 Phaseolus vulgaris HOM05D004149 ORTHO05D005028 3.6e-73 278.9 223 61.9
CiPaw.09G210500 Carya illinoinensis HOM05D004149 ORTHO05D005028 1.4e-72 276.9 229 60.7
Glyma.03G056500 Glycine max HOM05D004149 ORTHO05D005028 1.4e-72 276.9 226 61.1
Lalb_Chr07g0193651 Lupinus albus HOM05D004149 ORTHO05D005028 1.8e-72 276.6 218 61.9
Gohir.A09G089600 Gossypium hirsutum HOM05D004149 ORTHO05D005028 3.0e-72 275.8 222 63.1
Manes.01G160400 Manihot esculenta HOM05D004149 ORTHO05D005028 5.1e-72 275.0 225 64.4
Dinv14509 Davidia involucrata HOM05D004149 ORTHO05D005028 8.8e-72 274.2 225 60.4
arahy.Tifrunner.gnm1.ann1.CPEN6V Arachis hypogaea HOM05D004149 ORTHO05D005028 1.5e-71 273.5 229 60.7
Prupe.6G279000 Prunus persica HOM05D004149 ORTHO05D005028 1.5e-71 273.5 222 59.5
PSO339G1238 Papaver somniferum HOM05D004149 ORTHO05D005028 2.0e-71 273.1 228 60.1
QL01p038648 Quercus lobata HOM05D004149 ORTHO05D005028 2.0e-71 273.1 226 62.8
Psat2g057600 Pisum sativum HOM05D004149 ORTHO05D005028 2.5e-71 272.7 229 62.4
TPR.G34577 Trifolium pratense HOM05D004149 ORTHO05D005028 5.7e-71 271.6 229 61.6
Rhsim05G0216800 Rhododendron simsii HOM05D004149 ORTHO05D005028 7.4e-71 271.2 232 60.8
PSO384G4313 Papaver somniferum HOM05D004149 ORTHO05D005028 9.7e-71 270.8 228 59.6
MD12G1168700 Malus domestica HOM05D004149 ORTHO05D005028 1.3e-70 270.4 219 60.7
Aqoxy4G02534 Aquilegia oxysepala HOM05D004149 ORTHO05D005028 2.2e-70 269.6 226 61.5
DCAR_018696 Daucus carota HOM05D004149 ORTHO05D005028 3.7e-70 268.9 224 61.6
FAN25G1984 Fragaria x ananassa HOM05D004149 ORTHO05D005028 8.2e-70 267.7 222 59.5
Glyma.14G194500 Glycine max HOM05D004149 ORTHO05D005028 8.2e-70 267.7 244 61.1
PGR102G2658 Punica granatum HOM05D004149 ORTHO05D005028 1.1e-69 267.3 225 62.2
RcHm_v2.0_Chr3g0462841 Rosa chinensis HOM05D004149 ORTHO05D005028 1.1e-69 267.3 221 62.0
TWI31G0142 Tripterygium wilfordii HOM05D004149 ORTHO05D005028 1.4e-69 266.9 225 64.4
ATR0681G135 Amborella trichopoda HOM05D004149 ORTHO05D005028 2.4e-69 266.2 226 61.1
arahy.Tifrunner.gnm1.ann1.43A4DE Arachis hypogaea HOM05D004149 ORTHO05D005028 2.4e-69 266.2 227 63.0
MD11G1071900 Malus domestica HOM05D004149 ORTHO05D005028 3.1e-69 265.8 221 63.8
FAN16G0525 Fragaria x ananassa HOM05D004149 ORTHO05D005028 5.3e-69 265.0 223 59.2
FvH4_3g38810 Fragaria vesca HOM05D004149 ORTHO05D005028 1.5e-68 263.5 223 58.7
arahy.Tifrunner.gnm1.ann1.AG3942 Arachis hypogaea HOM05D004149 ORTHO05D005028 2.0e-68 263.1 227 62.6
Glyma.02G227600 Glycine max HOM05D004149 ORTHO05D005028 2.6e-68 262.7 231 61.9
Lalb_Chr10g0103381 Lupinus albus HOM05D004149 ORTHO05D005028 3.4e-68 262.3 228 62.3
Ca_20283_v3 Cicer arietinum L. HOM05D004149 ORTHO05D005028 4.5e-68 261.9 227 60.4
Sc22g0002520 Simmondsia chinensis HOM05D004149 ORTHO05D005028 4.5e-68 261.9 225 59.1
Lj3g0002740 Lotus japonicus HOM05D004149 ORTHO05D005028 5.9e-68 261.5 219 62.1
Potri.009G047000 Populus trichocarpa HOM05D004149 ORTHO05D005028 1.0e-67 260.8 222 59.9
VMungo0647G1724 Vigna mungo HOM05D004149 ORTHO05D005028 1.0e-67 260.8 246 58.1
RcHm_v2.0_Chr5g0070001 Rosa chinensis HOM05D004149 ORTHO05D005028 1.3e-67 260.4 223 61.0
Cpa.g.sc112.1 Carica papaya HOM05D004149 ORTHO05D005028 1.7e-67 260.0 169 71.0
Phvul.008G260400 Phaseolus vulgaris HOM05D004149 ORTHO05D005028 1.7e-67 260.0 246 58.5
ECA248G2679 Erigeron canadensis HOM05D000014 ORTHO05D000093 5.0e-67 258.5 225 57.3
Potri.001G253000 Populus trichocarpa HOM05D004149 ORTHO05D005028 8.5e-67 257.7 230 57.8
FAN05G2859 Fragaria x ananassa HOM05D004149 ORTHO05D005028 1.9e-66 256.5 223 58.3
Prupe.6G055700 Prunus persica HOM05D004149 ORTHO05D005028 1.9e-66 256.5 225 59.1
FvH4_6g11300 Fragaria vesca HOM05D004149 ORTHO05D005028 9.4e-66 254.2 223 58.3
FAN14G0231 Fragaria x ananassa HOM05D004149 ORTHO05D005028 9.4e-66 254.2 223 58.3
FAN14G3883 Fragaria x ananassa HOM05D004149 ORTHO05D005028 9.4e-66 254.2 223 58.3
Atru.chr3.4194 Acer truncatum HOM05D004149 ORTHO05D005028 2.1e-65 253.1 159 73.0
EL10Ac5g12549 Beta vulgaris HOM05D004149 ORTHO05D005028 4.7e-65 251.9 226 57.5
TPR.G13346 Trifolium pratense HOM05D004149 ORTHO05D005028 6.1e-65 251.5 223 59.2
Ah.12g058720 Amaranthus hybridus HOM05D004149 ORTHO05D005028 7.9e-65 251.1 226 58.8
Lalb_Chr04g0252201 Lupinus albus HOM05D004149 ORTHO05D005028 1.4e-64 250.4 226 57.1
Hund14286 Selenicereus undatus HOM05D004149 ORTHO05D005028 1.4e-64 250.4 227 57.3
FAN09G2001 Fragaria x ananassa HOM05D004149 ORTHO05D005028 6.7e-64 248.1 223 57.4
Manes.09G107600 Manihot esculenta HOM05D004149 ORTHO05D005028 8.8e-64 247.7 208 60.6
CDE03G0191 Ceratophyllum demersum HOM05D004149 ORTHO05D005028 3.7e-62 242.3 223 54.7
Zm00001eb368380 Zea mays HOM05D004149 ORTHO05D005028 8.2e-62 241.1 225 53.8
Psat7g245760 Pisum sativum HOM05D004149 ORTHO05D005028 1.4e-61 240.4 222 59.9
Zm00001eb351750 Zea mays HOM05D004149 ORTHO05D005028 1.4e-61 240.4 236 56.4
Sabra09G0034400 Salix brachista HOM05D004149 ORTHO05D005028 2.4e-61 239.6 267 50.2
CDE04G2602 Ceratophyllum demersum HOM05D004149 ORTHO05D005028 4.1e-61 238.8 224 53.1
HPP92_017934 Vanilla planifolia HOM05D004149 ORTHO05D005028 5.3e-61 238.4 233 53.6
Lj2C73G10 Lonicera japonica HOM05D004149 ORTHO05D005028 7.0e-61 238.0 274 47.8
Cfa011711 Carpinus fangiana HOM05D004149 ORTHO05D005028 9.1e-61 237.7 161 68.3
CANSAT54G2318 Cannabis sativa HOM05D004149 ORTHO05D005028 1.5e-60 236.9 254 50.0
SHI31752 Sapria himalayana HOM05D004149 ORTHO05D005028 2.0e-60 236.5 237 53.2
Medtr4g015610 Medicago truncatula HOM05D004149 ORTHO05D005028 1.3e-59 233.8 222 57.7
Os01g0832200 Oryza sativa ssp. japonica HOM05D004149 ORTHO05D005028 6.5e-59 231.5 222 54.5
Os05g0467300 Oryza sativa ssp. japonica HOM05D004149 ORTHO05D005028 1.5e-58 230.3 244 53.7
SEGI_37457 Sequoiadendron giganteum HOM05D004149 ORTHO05D005028 1.6e-57 226.9 224 51.8
CiPaw.14G058300 Carya illinoinensis HOM05D004149 ORTHO05D005028 2.3e-56 223.0 198 59.6
Carub.0005s1339 Capsella rubella HOM05D004149 ORTHO05D005028 1.7e-54 216.9 133 80.5
Peaxi162Scf00170g00124 Petunia axillaris HOM05D004149 ORTHO05D005028 2.4e-53 213.0 138 71.0
Dinv14507 Davidia involucrata HOM05D011585 ORTHO05D005028 7.0e-53 211.5 142 65.5
FAN11G2604 Fragaria x ananassa HOM05D004149 ORTHO05D005028 2.0e-52 209.9 272 44.1
Dinv03100 Davidia involucrata HOM05D004149 ORTHO05D005028 2.1e-49 199.9 130 71.5
AUR62030801 Chenopodium quinoa HOM05D004149 ORTHO05D005028 8.8e-48 194.5 239 48.1
AUR62030494 Chenopodium quinoa HOM05D004149 ORTHO05D005028 9.8e-47 191.0 140 65.0
Actinidia29092 Actinidia chinensis HOM05D004149 ORTHO05D005028 3.7e-46 189.1 176 53.4
CSS0016200 Camellia sinensis var. sinensis HOM05D004149 ORTHO05D005028 3.1e-45 186.0 130 68.5
MBI15_g14842_MAGBIO Magnolia biondii HOM05D004149 ORTHO05D005028 9.1e-45 184.5 135 62.2
Ca_05615_v3 Cicer arietinum L. HOM05D004149 ORTHO05D005028 4.5e-44 182.2 134 63.4
SMO358G0328 Selaginella moellendorffii HOM05D004149 ORTHO05D005028 8.5e-43 177.9 151 55.0
FAN21G1905 Fragaria x ananassa HOM05D004149 ORTHO05D005028 1.5e-42 177.2 130 63.1
Psat7g245800 Pisum sativum HOM05D004149 ORTHO05D005028 5.7e-39 165.2 122 63.9
Ciclev10013383m.g Citrus clementina HOM05D004149 ORTHO05D005028 7.0e-37 158.3 134 54.5
FAN02G4186 Fragaria x ananassa HOM05D004149 ORTHO05D005028 1.9e-34 150.2 226 45.6
vmacro20289 Vaccinium macrocarpon HOM05D004149 ORTHO05D005028 1.4e-32 144.1 129 58.9
Solyc09g005590.3 Solanum lycopersicum HOM05D004149 ORTHO05D005028 2.3e-32 143.3 90 68.9
Atru.chr8.2258 Acer truncatum HOM05D004149 ORTHO05D005028 3.7e-30 136.0 91 67.0
MD04G1155500 Malus domestica HOM05D004149 ORTHO05D005028 5.8e-23 112.1 139 46.0
Cre14.g616950 Chlamydomonas reinhardtii HOM05D004149 ORTHO05D005028 1.7e-22 110.5 123 42.3
MD03G1067500 Malus domestica HOM05D004149 ORTHO05D005028 2.9e-22 109.8 71 71.8
Solyc09g005580.4 Solanum lycopersicum HOM05D004149 ORTHO05D005028 7.0e-21 105.1 101 58.4
C07p23840 Brassica napus HOM05D004149 ORTHO05D005028 1.6e-20 104.0 79 67.1
Sed0020125 Sechium edule HOM05D004149 ORTHO05D005028 1.3e-19 100.9 226 27.0
Aqoxy2G00865 Aquilegia oxysepala HOM05D004149 ORTHO05D005028 5.2e-16 89.0 171 32.2
PRCOL_00001680 Prasinoderma coloniale HOM05D004149 ORTHO05D005028 1.2e-15 87.8 102 41.2
BcaB01g01543 Brassica carinata HOM05D004149 ORTHO05D039425 9.8e-15 84.7 74 60.8
CBR_g34707 Chara braunii HOM05D004149 ORTHO05D005028 9.8e-15 84.7 117 36.8
MCO12G475 Micromonas commoda HOM05D004149 ORTHO05D005028 1.7e-14 84.0 135 32.6
GSVIVG01030787001 Vitis vinifera HOM05D004149 ORTHO05D005028 4.9e-14 82.4 97 51.5
GSVIVG01032328001 Vitis vinifera HOM05D004149 ORTHO05D005028 4.9e-14 82.4 94 51.1
GSVIVG01000345001 Vitis vinifera HOM05D000200 ORTHO05D011629 8.3e-14 81.6 86 54.7
MSTRG.19005 Avicennia marina HOM05D004149 ORTHO05D005028 2.4e-13 80.1 88 48.9
BcaC02g09351 Brassica carinata HOM05D004149 ORTHO05D094654 1.0e-11 74.7 73 53.4
BcaB06g29604 Brassica carinata HOM05D004149 ORTHO05D039425 2.1e-09 67.0 56 62.5
BcaB07g33953 Brassica carinata HOM05D004149 ORTHO05D095923 4.4e-07 59.3 48 64.6


User provided reference genes

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