Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p14070 Brassica napus HOM05D005349 ORTHO05D006901 6.8e-96 354.0 179 100.0
A03p11980 Brassica napus HOM05D005349 ORTHO05D006901 2.1e-92 342.4 179 95.0
BolC3t13854H Brassica oleracea HOM05D005349 ORTHO05D006901 9.2e-85 317.0 153 100.0
BraA03t10509Z Brassica rapa HOM05D005349 ORTHO05D006901 9.2e-85 317.0 153 100.0
A02p07450 Brassica napus HOM05D005349 ORTHO05D006901 1.7e-83 312.8 179 85.5
Sp6g20620 Schrenkiella parvula HOM05D005349 ORTHO05D006901 6.6e-83 310.8 153 96.1
AL8G35250 Arabidopsis lyrata HOM05D005349 ORTHO05D006901 8.7e-83 310.5 153 96.1
Thhalv10014880m.g Eutrema salsugineum HOM05D005349 ORTHO05D006901 8.7e-83 310.5 153 96.1
C02p13010 Brassica napus HOM05D005349 ORTHO05D006901 3.3e-82 308.5 154 96.1
BraA02t05823Z Brassica rapa HOM05D005349 ORTHO05D006901 3.3e-82 308.5 153 96.1
BcaC03g14066 Brassica carinata HOM05D005349 ORTHO05D006901 1.3e-81 306.6 153 96.1
CARHR272860 Cardamine hirsuta HOM05D005349 ORTHO05D006901 2.8e-81 305.4 153 93.5
AT5G58920 Arabidopsis thaliana HOM05D005349 ORTHO05D006901 4.8e-81 304.7 153 94.1
BolC2t07413H Brassica oleracea HOM05D005349 ORTHO05D006901 4.8e-81 304.7 153 95.4
Carub.0008s1956 Capsella rubella HOM05D005349 ORTHO05D006901 4.8e-81 304.7 153 93.5
BcaB05g22458 Brassica carinata HOM05D005349 ORTHO05D006901 9.0e-80 300.4 152 95.4
Aa31LG1G11620 Aethionema arabicum HOM05D005349 ORTHO05D006901 1.6e-76 289.7 153 87.6
THA.LOC104810731 Tarenaya hassleriana HOM05D005349 ORTHO05D006901 1.1e-74 283.5 153 84.3
Duzib168G1908 Durio zibethinus HOM05D005349 ORTHO05D006901 1.3e-70 270.0 153 80.4
Gohir.A13G225100 Gossypium hirsutum HOM05D005349 ORTHO05D006901 6.4e-70 267.7 153 79.1
Gorai.013G260800 Gossypium raimondii HOM05D005349 ORTHO05D006901 1.4e-69 266.5 153 78.4
Gohir.D13G230100 Gossypium hirsutum HOM05D005349 ORTHO05D006901 2.4e-69 265.8 153 78.4
Migut.I00090 Erythranthe guttata HOM05D005349 ORTHO05D006901 2.1e-68 262.7 153 77.8
COL.COLO4_19094 Corchorus olitorius HOM05D005349 ORTHO05D006901 3.5e-68 261.9 153 78.4
Thecc.09G306800 Theobroma cacao HOM05D005349 ORTHO05D006901 3.5e-68 261.9 152 78.3
Cpa.g.sc112.60 Carica papaya HOM05D005349 ORTHO05D006901 2.3e-67 259.2 148 78.4
Manes.17G019100 Manihot esculenta HOM05D005349 ORTHO05D006901 2.3e-67 259.2 153 77.1
QL01p027076 Quercus lobata HOM05D005349 ORTHO05D006901 2.3e-67 259.2 152 76.3
CiPaw.13G081900 Carya illinoinensis HOM05D005349 ORTHO05D006901 3.9e-67 258.5 153 75.8
Potri.009G042300 Populus trichocarpa HOM05D005349 ORTHO05D006901 4.3e-66 255.0 153 73.9
PGR102G2751 Punica granatum HOM05D005349 ORTHO05D006901 7.4e-66 254.2 151 75.5
Hma1.2p1_0543F.1_g175200 Hydrangea macrophylla HOM05D005349 ORTHO05D006901 9.6e-66 253.8 151 74.8
PGR102G2487 Punica granatum HOM05D005349 ORTHO05D006901 9.6e-66 253.8 153 75.8
Cfa011642 Carpinus fangiana HOM05D005349 ORTHO05D006901 1.3e-65 253.4 153 75.2
Lj4P290T21 Lonicera japonica HOM05D005349 ORTHO05D006901 1.6e-65 253.1 153 75.2
BcaB01g04630 Brassica carinata HOM05D005349 ORTHO05D006901 2.1e-65 252.7 153 85.6
Dinv28589 Davidia involucrata HOM05D005349 ORTHO05D006901 2.1e-65 252.7 153 73.9
Dinv28608 Davidia involucrata HOM05D005349 ORTHO05D006901 2.1e-65 252.7 153 73.9
RcHm_v2.0_Chr5g0068461 Rosa chinensis HOM05D005349 ORTHO05D006901 2.1e-65 252.7 152 75.0
Hma1.2p1_3368F.1_g335610 Hydrangea macrophylla HOM05D005349 ORTHO05D006901 4.8e-65 251.5 151 74.8
FAN11G0404 Fragaria x ananassa HOM05D005349 ORTHO05D006901 6.2e-65 251.1 152 75.0
Sabra09G0029800 Salix brachista HOM05D005349 ORTHO05D006901 6.2e-65 251.1 153 72.5
CSS0008956 Camellia sinensis var. sinensis HOM05D005349 ORTHO05D006901 8.1e-65 250.8 153 73.9
Haze_24248 Corylus avellana HOM05D005349 ORTHO05D006901 1.8e-64 249.6 153 73.9
MD03G1077000 Malus domestica HOM05D005349 ORTHO05D006901 1.8e-64 249.6 148 75.7
Sed0012895 Sechium edule HOM05D005349 ORTHO05D006901 2.4e-64 249.2 153 73.2
Prupe.6G061600 Prunus persica HOM05D005349 ORTHO05D006901 3.1e-64 248.8 148 75.0
FvH4_3g38110 Fragaria vesca HOM05D005349 ORTHO05D006901 4.0e-64 248.4 152 74.3
MD11G1081300 Malus domestica HOM05D005349 ORTHO05D006901 4.0e-64 248.4 148 75.0
CAN.G206.119 Capsicum annuum HOM05D005349 ORTHO05D006901 9.0e-64 247.3 152 73.7
Ciclev10029468m.g Citrus clementina HOM05D005349 ORTHO05D006901 9.0e-64 247.3 153 73.9
Oeu009384.1 Olea europaea HOM05D005349 ORTHO05D006901 9.0e-64 247.3 148 75.7
Peaxi162Scf00129g00059 Petunia axillaris HOM05D005349 ORTHO05D006901 9.0e-64 247.3 149 75.2
Oeu049278.1 Olea europaea HOM05D005349 ORTHO05D006901 1.2e-63 246.9 152 73.0
FAN16G1977 Fragaria x ananassa HOM05D005349 ORTHO05D006901 2.0e-63 246.1 152 73.7
Rhsim01G0234700 Rhododendron simsii HOM05D005349 ORTHO05D006901 2.0e-63 246.1 153 71.9
CsaV3_1G035930 Cucumis sativus L. HOM05D005349 ORTHO05D006901 2.6e-63 245.7 153 71.9
Eucgr.B02277 Eucalyptus grandis HOM05D005349 ORTHO05D006901 2.6e-63 245.7 153 73.2
DCAR_007395 Daucus carota HOM05D005349 ORTHO05D006901 5.8e-63 244.6 153 70.6
Solyc02g087650.4 Solanum lycopersicum HOM05D005349 ORTHO05D006901 5.8e-63 244.6 152 73.0
Sopen02g032400 Solanum pennellii HOM05D005349 ORTHO05D006901 1.7e-62 243.0 151 72.2
TAR369G0898 Trochodendron aralioides HOM05D005349 ORTHO05D006901 2.2e-62 242.7 153 70.6
DCAR_005899 Daucus carota HOM05D005349 ORTHO05D006901 3.8e-62 241.9 153 69.3
Nitab4.5_0000021g0450 Nicotiana tabacum HOM05D001216 ORTHO05D008355 6.5e-62 241.1 152 71.1
Nitab4.5_0002265g0210 Nicotiana tabacum HOM05D005349 ORTHO05D006901 6.5e-62 241.1 153 69.9
TAR633G1541 Trochodendron aralioides HOM05D005349 ORTHO05D006901 6.5e-62 241.1 152 71.1
PGSC0003DMG400001310 Solanum tuberosum HOM05D005349 ORTHO05D006901 8.4e-62 240.7 147 74.1
PGSC0003DMG400001415 Solanum tuberosum HOM05D005349 ORTHO05D006901 8.4e-62 240.7 147 74.1
MELO3C020577.2 Cucumis melo HOM05D005349 ORTHO05D006901 1.1e-61 240.4 153 69.3
AUR62001690 Chenopodium quinoa HOM05D005349 ORTHO05D006901 1.4e-61 240.0 141 77.3
AUR62020092 Chenopodium quinoa HOM05D005349 ORTHO05D006901 1.4e-61 240.0 141 77.3
Nn2g13609 Nelumbo nucifera HOM05D005349 ORTHO05D006901 2.5e-61 239.2 147 70.7
ClCG03G001010 Citrullus lanatus HOM05D005349 ORTHO05D006901 9.3e-61 237.3 153 70.6
Hund18861 Selenicereus undatus HOM05D005349 ORTHO05D006901 1.6e-60 236.5 139 77.0
TAR369G0142 Trochodendron aralioides HOM05D005349 ORTHO05D006901 2.1e-60 236.1 142 73.2
Ah.13g068160 Amaranthus hybridus HOM05D005349 ORTHO05D006901 2.7e-60 235.7 144 74.3
unitig_0.g448 Utricularia gibba HOM05D005349 ORTHO05D006901 2.7e-60 235.7 152 70.4
Sc12g0000960 Simmondsia chinensis HOM05D005349 ORTHO05D006901 3.5e-60 235.3 141 75.9
Ah.13g068140 Amaranthus hybridus HOM05D005349 ORTHO05D006901 7.9e-60 234.2 139 75.5
Lalb_Chr17g0344951 Lupinus albus HOM05D005349 ORTHO05D006901 7.9e-60 234.2 154 72.1
MBI06_g38157_MAGBIO Magnolia biondii HOM05D005349 ORTHO05D006901 1.8e-59 233.0 147 68.0
Cc01_g13820 Coffea canephora HOM05D005349 ORTHO05D006901 5.1e-59 231.5 143 71.3
MSTRG.12084 Avicennia marina HOM05D005349 ORTHO05D006901 8.7e-59 230.7 146 69.2
PSO017G5320 Papaver somniferum HOM05D005349 ORTHO05D006901 8.7e-59 230.7 144 70.1
PSO675G4048 Papaver somniferum HOM05D005349 ORTHO05D006901 8.7e-59 230.7 144 70.1
SalBow2G1455 Salvia bowleyana HOM05D005349 ORTHO05D006901 1.1e-58 230.3 146 70.5
Nn7g36392 Nelumbo nucifera HOM05D005349 ORTHO05D006901 1.5e-58 229.9 142 69.7
HanXRQChr08g0237161 Helianthus annuus HOM05D005349 ORTHO05D006901 1.9e-58 229.6 148 70.3
LjContig00155g0000909 Lotus japonicus HOM05D005349 ORTHO05D006901 5.7e-58 228.0 142 71.1
Psat2g059680 Pisum sativum HOM05D005349 ORTHO05D006901 5.7e-58 228.0 143 69.9
TAR369G0502 Trochodendron aralioides HOM05D005349 ORTHO05D006901 5.7e-58 228.0 136 73.5
Lsat_1_v5_gn_9_25761 Lactuca sativa HOM05D005349 ORTHO05D006901 6.2e-57 224.6 147 67.3
Ca_05579_v3 Cicer arietinum L. HOM05D005349 ORTHO05D006901 8.2e-57 224.2 143 69.2
arahy.Tifrunner.gnm1.ann1.2I3SKZ Arachis hypogaea HOM05D005349 ORTHO05D006901 1.1e-56 223.8 143 69.2
arahy.Tifrunner.gnm1.ann1.AUQG9H Arachis hypogaea HOM05D005349 ORTHO05D006901 1.1e-56 223.8 143 69.2
arahy.Tifrunner.gnm1.ann1.S3TFE0 Arachis hypogaea HOM05D005349 ORTHO05D006901 1.1e-56 223.8 143 69.2
arahy.Tifrunner.gnm1.ann1.TC15WI Arachis hypogaea HOM05D005349 ORTHO05D006901 1.8e-56 223.0 143 69.2
Glyma.14G191200 Glycine max HOM05D005349 ORTHO05D006901 2.4e-56 222.6 140 68.6
TWI31G0683 Tripterygium wilfordii HOM05D005349 ORTHO05D006901 2.4e-56 222.6 154 64.9
VMungo0647G2322 Vigna mungo HOM05D005349 ORTHO05D006901 2.4e-56 222.6 143 67.1
ATR0618G061 Amborella trichopoda HOM05D005349 ORTHO05D006901 3.1e-56 222.2 144 68.1
Aqoxy3G03834 Aquilegia oxysepala HOM05D005349 ORTHO05D006901 6.9e-56 221.1 149 64.4
Medtr5g069660 Medicago truncatula HOM05D005349 ORTHO05D006901 1.2e-55 220.3 142 68.3
Phvul.008G263400 Phaseolus vulgaris HOM05D005349 ORTHO05D006901 1.2e-55 220.3 146 65.8
SGA_v2.0_scaffold120G32925 Striga asiatica HOM05D005349 ORTHO05D006901 3.4e-55 218.8 147 67.3
HanXRQChr02g0036251 Helianthus annuus HOM05D005349 ORTHO05D006901 5.8e-55 218.0 144 67.4
ECA236G3830 Erigeron canadensis HOM05D005329 ORTHO05D006858 7.6e-55 217.6 142 67.6
CDE05G1614 Ceratophyllum demersum HOM05D005349 ORTHO05D006901 1.3e-54 216.9 146 64.4
Aqoxy5G03549 Aquilegia oxysepala HOM05D005349 ORTHO05D006901 1.9e-53 213.0 139 66.9
Zm00001eb031680 Zea mays HOM05D005349 ORTHO05D006901 3.2e-53 212.2 136 66.9
TPR.G24015 Trifolium pratense HOM05D005349 ORTHO05D006901 5.5e-53 211.5 142 66.9
Ah.06g188660 Amaranthus hybridus HOM05D005349 ORTHO05D006901 1.6e-52 209.9 124 77.4
Actinidia23901 Actinidia chinensis HOM05D005349 ORTHO05D006901 2.7e-52 209.1 153 60.8
CANSAT54G2462 Cannabis sativa HOM05D005349 ORTHO05D006901 1.8e-51 206.5 153 61.4
GSVIVG01024797001 Vitis vinifera HOM05D005349 ORTHO05D006901 5.1e-51 204.9 143 65.7
COL.COLO4_19096 Corchorus olitorius HOM05D005349 ORTHO05D006901 1.3e-46 190.3 109 81.7
RcHm_v2.0_Chr5g0068491 Rosa chinensis HOM05D005349 ORTHO05D006901 5.0e-46 188.3 176 53.4
Lalb_Chr15g0082641 Lupinus albus HOM05D005349 ORTHO05D006901 1.1e-42 177.2 153 53.6
SEGI_38965 Sequoiadendron giganteum HOM05D005349 ORTHO05D006901 2.0e-42 176.4 123 66.7
Lalb_Chr15g0082661 Lupinus albus HOM05D005349 ORTHO05D006901 3.7e-41 172.2 153 52.3
SEGI_26492 Sequoiadendron giganteum HOM05D005349 ORTHO05D006901 1.1e-40 170.6 124 64.5
Mapoly0132s0009 Marchantia polymorpha HOM05D005349 ORTHO05D006901 5.3e-40 168.3 123 61.8
Ca_14903_v3 Cicer arietinum L. HOM05D005349 ORTHO05D006901 4.2e-37 158.7 149 53.7
ECA247G0916 Erigeron canadensis HOM05D000773 ORTHO05D006901 5.5e-37 158.3 103 69.9
Lj6g0020380 Lotus japonicus HOM05D005349 ORTHO05D006901 3.6e-36 155.6 153 54.2
Pp3c5_10690 Physcomitrium patens HOM05D005349 ORTHO05D006901 4.7e-36 155.2 123 57.7
Medtr3g462700 Medicago truncatula HOM05D005349 ORTHO05D006901 2.6e-34 149.4 154 50.0
arahy.Tifrunner.gnm1.ann1.B244J5 Arachis hypogaea HOM05D005349 ORTHO05D006901 6.3e-33 144.8 166 51.2
BcaC04g19863 Brassica carinata HOM05D005349 ORTHO05D023983 6.3e-33 144.8 130 59.2
arahy.Tifrunner.gnm1.ann1.NW0IJW Arachis hypogaea HOM05D005349 ORTHO05D006901 1.4e-32 143.7 166 50.6
Glyma.18G064800 Glycine max HOM05D005349 ORTHO05D006901 1.8e-32 143.3 153 49.7
Psat5g161800 Pisum sativum HOM05D005349 ORTHO05D006901 2.4e-32 142.9 154 48.1
Phvul.006G066000 Phaseolus vulgaris HOM05D005349 ORTHO05D006901 5.9e-31 138.3 154 47.4
TPR.G13285 Trifolium pratense HOM05D005349 ORTHO05D006901 1.9e-29 133.3 155 46.5
Os01g0362000 Oryza sativa ssp. japonica HOM05D005349 ORTHO05D006901 2.1e-28 129.8 90 66.7
CSS0044332 Camellia sinensis var. sinensis HOM05D005349 ORTHO05D006901 5.2e-27 125.2 132 50.0
BolC9t57969H Brassica oleracea HOM05D005349 ORTHO05D023983 3.8e-22 109.0 122 51.6
BcaB01g04628 Brassica carinata HOM05D005349 ORTHO05D023983 3.2e-21 105.9 53 100.0
A10p15360 Brassica napus HOM05D005349 ORTHO05D006901 2.1e-20 103.2 63 77.8
Nitab4.5_0000564g0380 Nicotiana tabacum HOM05D005349 ORTHO05D006901 2.6e-18 96.3 67 70.1
C09p51090 Brassica napus HOM05D005349 ORTHO05D023983 9.1e-16 87.8 49 85.7
BraA10t43697Z Brassica rapa HOM05D005349 ORTHO05D023983 7.2e-13 78.2 46 82.6
HanXRQChr08g0237061 Helianthus annuus HOM05D005349 ORTHO05D006901 3.0e-11 72.8 62 59.7
SEGI_40143 Sequoiadendron giganteum HOM05D005349 ORTHO05D006901 2.4e-08 63.2 66 43.9
TAR623G0970 Trochodendron aralioides HOM05D005349 ORTHO05D415159 4.5e-07 58.9 42 66.7


User provided reference genes

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