Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p13910 Brassica napus HOM05D004920 ORTHO05D005998 8.9e-41 169.9 87 100.0
BcaC01g04260 Brassica carinata HOM05D004920 ORTHO05D010632 2.3e-12 75.5 36 97.2
C03p43360 Brassica napus HOM05D004920 ORTHO05D010632 2.3e-12 75.5 36 97.2
BolC3t16607H Brassica oleracea HOM05D008686 ORTHO05D010632 2.3e-12 75.5 36 97.2
BcaC02g07783 Brassica carinata HOM05D004920 ORTHO05D005998 1.1e-11 73.2 40 87.5
BcaB06g28727 Brassica carinata HOM05D004920 ORTHO05D005998 2.5e-11 72.0 35 97.1
A02p38170 Brassica napus HOM05D011482 ORTHO05D001953 2.5e-11 72.0 35 97.1
A04p26140 Brassica napus HOM05D004920 ORTHO05D005998 2.5e-11 72.0 35 97.1
BolC4t27823H Brassica oleracea HOM05D004920 ORTHO05D005998 2.5e-11 72.0 35 97.1
BraA02t08794Z Brassica rapa HOM05D001897 ORTHO05D001953 2.5e-11 72.0 35 97.1
Sp4g16400 Schrenkiella parvula HOM05D004920 ORTHO05D005998 2.5e-11 72.0 35 97.1
BcaB07g30079 Brassica carinata HOM05D006007 ORTHO05D007518 3.3e-11 71.6 39 89.7
BolC5t34235H Brassica oleracea HOM05D001872 ORTHO05D001859 3.3e-11 71.6 47 80.9
Thhalv10017133m.g Eutrema salsugineum HOM05D004920 ORTHO05D005998 3.3e-11 71.6 40 85.0
BcaB02g10610 Brassica carinata HOM05D004920 ORTHO05D005998 4.3e-11 71.2 35 94.3
A05p11610 Brassica napus HOM05D004920 ORTHO05D005998 4.3e-11 71.2 35 94.3
C04p15060 Brassica napus HOM05D004920 ORTHO05D005998 4.3e-11 71.2 35 94.3
BolC4t23082H Brassica oleracea HOM05D004920 ORTHO05D005998 4.3e-11 71.2 35 94.3
BraA05t20108Z Brassica rapa HOM05D004920 ORTHO05D005998 4.3e-11 71.2 35 94.3
BcaC04g19340 Brassica carinata HOM05D001872 ORTHO05D005998 5.6e-11 70.9 88 50.0
AL4G29930 Arabidopsis lyrata HOM05D004920 ORTHO05D005998 7.3e-11 70.5 35 94.3
AT2G34050 Arabidopsis thaliana HOM05D004920 ORTHO05D005998 7.3e-11 70.5 35 94.3
C04p63520 Brassica napus HOM05D004920 ORTHO05D005998 7.3e-11 70.5 35 94.3
BraA04t18117Z Brassica rapa HOM05D004920 ORTHO05D005998 7.3e-11 70.5 35 94.3
Carub.0004s1568 Capsella rubella HOM05D004920 ORTHO05D005998 7.3e-11 70.5 35 94.3
BcaNung00861 Brassica carinata HOM05D001872 ORTHO05D001859 9.6e-11 70.1 36 94.4
BolC1t01767H Brassica oleracea HOM05D001872 ORTHO05D005998 9.6e-11 70.1 36 94.4
BolC7t45617H Brassica oleracea HOM05D001872 ORTHO05D001859 9.6e-11 70.1 36 94.4
Aa31LG9G13860 Aethionema arabicum HOM05D004920 ORTHO05D005998 1.3e-10 69.7 35 91.4
BcaC05g29287 Brassica carinata HOM05D001911 ORTHO05D001951 1.3e-10 69.7 35 94.3
THA.LOC104812631 Tarenaya hassleriana HOM05D004920 ORTHO05D005998 1.6e-10 69.3 39 82.1
A02p36640 Brassica napus HOM05D006007 ORTHO05D007518 2.1e-10 68.9 39 87.2
BraA02t08659Z Brassica rapa HOM05D006007 ORTHO05D007518 2.1e-10 68.9 39 87.2
CARHR128130 Cardamine hirsuta HOM05D004920 ORTHO05D005998 2.1e-10 68.9 35 91.4
Cpa.g.sc80.22 Carica papaya HOM05D004920 ORTHO05D005998 2.8e-10 68.6 40 77.5
ECA236G4389 Erigeron canadensis HOM05D004920 ORTHO05D005998 3.6e-10 68.2 40 75.0
Lsat_1_v5_gn_7_23761 Lactuca sativa HOM05D004920 ORTHO05D005998 3.6e-10 68.2 40 77.5
C01p18450 Brassica napus HOM05D001872 ORTHO05D001859 4.8e-10 67.8 34 94.1
Manes.17G051900 Manihot esculenta HOM05D004920 ORTHO05D005998 6.2e-10 67.4 40 77.5
TPR.G17014 Trifolium pratense HOM05D004920 ORTHO05D005998 8.1e-10 67.0 40 75.0
Cpa.g.sc80.25 Carica papaya HOM05D004920 ORTHO05D005998 1.1e-09 66.6 40 75.0
Lj7P478G59 Lonicera japonica HOM05D004920 ORTHO05D005998 1.4e-09 66.2 40 72.5
Lj4g0024893 Lotus japonicus HOM05D004920 ORTHO05D005998 1.4e-09 66.2 40 75.0
Phvul.001G005700 Phaseolus vulgaris HOM05D004920 ORTHO05D005998 1.4e-09 66.2 40 72.5
Ca_10660_v3 Cicer arietinum L. HOM05D004920 ORTHO05D005998 1.8e-09 65.9 40 72.5
Cc02_g14330 Coffea canephora HOM05D004920 ORTHO05D005998 1.8e-09 65.9 40 75.0
Glyma.12G114600 Glycine max HOM05D004920 ORTHO05D005998 1.8e-09 65.9 40 75.0
HanXRQChr15g0481321 Helianthus annuus HOM05D004920 ORTHO05D005998 1.8e-09 65.9 40 72.5
Medtr4g087955 Medicago truncatula HOM05D004920 ORTHO05D005998 1.8e-09 65.9 40 75.0
Oeu043091.1 Olea europaea HOM05D004920 ORTHO05D005998 1.8e-09 65.9 40 72.5
SGA_v2.0_scaffold16G07660 Striga asiatica HOM05D004920 ORTHO05D005998 1.8e-09 65.9 40 72.5
TPR.G16259 Trifolium pratense HOM05D004920 ORTHO05D005998 1.8e-09 65.9 40 75.0
Migut.M01075 Erythranthe guttata HOM05D004920 ORTHO05D005998 2.4e-09 65.5 40 72.5
MBI07_g06434_MAGBIO Magnolia biondii HOM05D004920 ORTHO05D005998 3.1e-09 65.1 40 72.5
Atru.chr10.1743 Acer truncatum HOM05D004920 ORTHO05D005998 4.0e-09 64.7 40 72.5
Ah.05g178940 Amaranthus hybridus HOM05D004920 ORTHO05D005998 4.0e-09 64.7 40 70.0
AT3G29390 Arabidopsis thaliana HOM05D006007 ORTHO05D007518 4.0e-09 64.7 39 82.1
MELO3C007238.2 Cucumis melo HOM05D004920 ORTHO05D005998 4.0e-09 64.7 40 70.0
CsaV3_6G050600 Cucumis sativus L. HOM05D004920 ORTHO05D005998 4.0e-09 64.7 40 70.0
Eucgr.D00572 Eucalyptus grandis HOM05D004920 ORTHO05D005998 4.0e-09 64.7 40 72.5
Oeu025561.1 Olea europaea HOM05D004920 ORTHO05D005998 4.0e-09 64.7 40 70.0
VMungo1127G0753 Vigna mungo HOM05D004920 ORTHO05D005998 4.0e-09 64.7 40 72.5
MSTRG.14155 Avicennia marina HOM05D004920 ORTHO05D005998 5.3e-09 64.3 40 72.5
Ca_26043_v3 Cicer arietinum L. HOM05D004920 ORTHO05D005998 5.3e-09 64.3 40 72.5
Glyma.04G173800 Glycine max HOM05D004920 ORTHO05D005998 5.3e-09 64.3 40 72.5
Glyma.06G291400 Glycine max HOM05D004920 ORTHO05D005998 5.3e-09 64.3 40 72.5
Gohir.D01G045600 Gossypium hirsutum HOM05D004920 ORTHO05D005998 5.3e-09 64.3 39 71.8
Gorai.002G065200 Gossypium raimondii HOM05D004920 ORTHO05D005998 5.3e-09 64.3 39 71.8
Lalb_Chr07g0189681 Lupinus albus HOM05D004920 ORTHO05D005998 5.3e-09 64.3 40 70.0
Nitab4.5_0000138g0010 Nicotiana tabacum HOM05D004920 ORTHO05D005998 5.3e-09 64.3 40 70.0
PGR004G0415 Punica granatum HOM05D004920 ORTHO05D005998 5.3e-09 64.3 40 72.5
PGR046G0004 Punica granatum HOM05D004920 ORTHO05D005998 5.3e-09 64.3 40 72.5
Sabra04G0033000 Salix brachista HOM05D004920 ORTHO05D005998 5.3e-09 64.3 40 70.0
GSVIVG01021153001 Vitis vinifera HOM05D004920 ORTHO05D005998 5.3e-09 64.3 40 70.0
Peaxi162Scf00016g00346 Petunia axillaris HOM05D004920 ORTHO05D005998 6.9e-09 63.9 40 70.0
Peaxi162Scf00367g00049 Petunia axillaris HOM05D004920 ORTHO05D005998 6.9e-09 63.9 40 70.0
Potri.004G052200 Populus trichocarpa HOM05D004920 ORTHO05D005998 6.9e-09 63.9 40 70.0
Thecc.06G177000 Theobroma cacao HOM05D004920 ORTHO05D005998 6.9e-09 63.9 40 70.0
CANSAT35G1037 Cannabis sativa HOM05D004920 ORTHO05D005998 9.0e-09 63.5 40 70.0
ClCG01G023480 Citrullus lanatus HOM05D004920 ORTHO05D005998 9.0e-09 63.5 40 67.5
COL.COLO4_31383 Corchorus olitorius HOM05D004920 ORTHO05D005998 9.0e-09 63.5 40 67.5
Cpa.g.sc12.156 Carica papaya HOM05D004920 ORTHO05D005998 1.2e-08 63.2 40 72.5
Dinv36435 Davidia involucrata HOM05D004920 ORTHO05D005998 1.2e-08 63.2 40 70.0
Dinv40630 Davidia involucrata HOM05D004920 ORTHO05D005998 1.2e-08 63.2 40 70.0
MD05G1306300 Malus domestica HOM05D004920 ORTHO05D005998 1.2e-08 63.2 40 72.5
MD10G1285300 Malus domestica HOM05D004920 ORTHO05D005998 1.2e-08 63.2 40 72.5
Cfa000557 Carpinus fangiana HOM05D004920 ORTHO05D005998 1.5e-08 62.8 40 70.0
Haze_06318 Corylus avellana HOM05D004920 ORTHO05D005998 1.5e-08 62.8 40 70.0
Gohir.A05G157100 Gossypium hirsutum HOM05D004920 ORTHO05D005998 1.5e-08 62.8 39 69.2
RcHm_v2.0_Chr5g0009901 Rosa chinensis HOM05D004920 ORTHO05D005998 1.5e-08 62.8 40 70.0
CAN.G1961.2 Capsicum annuum HOM05D004920 ORTHO05D005998 2.0e-08 62.4 40 67.5
DCAR_004027 Daucus carota HOM05D004920 ORTHO05D005998 2.0e-08 62.4 40 67.5
DCAR_007975 Daucus carota HOM05D004920 ORTHO05D005998 2.0e-08 62.4 40 70.0
Nitab4.5_0008952g0010 Nicotiana tabacum HOM05D004920 ORTHO05D005998 2.0e-08 62.4 39 69.2
Solyc02g031770.4 Solanum lycopersicum HOM05D004920 ORTHO05D005998 2.0e-08 62.4 40 67.5
Sopen02g010080 Solanum pennellii HOM05D004920 ORTHO05D005998 2.0e-08 62.4 40 67.5
Actinidia07625 Actinidia chinensis HOM05D004920 ORTHO05D005998 2.6e-08 62.0 40 67.5
Gohir.D05G160000 Gossypium hirsutum HOM05D004920 ORTHO05D005998 2.6e-08 62.0 39 69.2
Gorai.009G165000 Gossypium raimondii HOM05D004920 ORTHO05D005998 2.6e-08 62.0 39 69.2
QL04p069154 Quercus lobata HOM05D004920 ORTHO05D005998 2.6e-08 62.0 40 67.5
Rhsim06G0035100 Rhododendron simsii HOM05D004920 ORTHO05D005998 2.6e-08 62.0 40 67.5
Sed0019770 Sechium edule HOM05D004920 ORTHO05D005998 2.6e-08 62.0 40 67.5
Hund21192 Selenicereus undatus HOM05D004920 ORTHO05D005998 2.6e-08 62.0 40 67.5
Aqoxy1G02218 Aquilegia oxysepala HOM05D004920 ORTHO05D005998 3.4e-08 61.6 40 67.5
CiPaw.09G066500 Carya illinoinensis HOM05D004920 ORTHO05D005998 4.4e-08 61.2 40 67.5
FvH4_3g08250 Fragaria vesca HOM05D004920 ORTHO05D005998 4.4e-08 61.2 40 67.5
FvH4_7g02080 Fragaria vesca HOM05D004920 ORTHO05D005998 4.4e-08 61.2 40 67.5
FAN06G4868 Fragaria x ananassa HOM05D004920 ORTHO05D005998 4.4e-08 61.2 40 67.5
FAN11G1044 Fragaria x ananassa HOM05D004920 ORTHO05D005998 4.4e-08 61.2 40 67.5
FAN16G1146 Fragaria x ananassa HOM05D004920 ORTHO05D005998 4.4e-08 61.2 40 67.5
SGA_v2.0_scaffold341G49353 Striga asiatica HOM05D004920 ORTHO05D005998 4.4e-08 61.2 39 66.7
AUR62014920 Chenopodium quinoa HOM05D004920 ORTHO05D005998 5.8e-08 60.8 40 72.5
AUR62031127 Chenopodium quinoa HOM05D004920 ORTHO05D005998 5.8e-08 60.8 40 72.5
Ciclev10016425m.g Citrus clementina HOM05D004920 ORTHO05D005998 5.8e-08 60.8 40 65.0
AL5G19590 Arabidopsis lyrata HOM05D006007 ORTHO05D007518 7.6e-08 60.5 39 74.4
BcaB06g28732 Brassica carinata HOM05D004920 ORTHO05D005998 7.6e-08 60.5 29 96.6
Nn2g14559 Nelumbo nucifera HOM05D004920 ORTHO05D005998 7.6e-08 60.5 40 67.5
Rhsim02G0138400 Rhododendron simsii HOM05D004920 ORTHO05D005998 7.6e-08 60.5 40 65.0
Sc17g0005830 Simmondsia chinensis HOM05D004920 ORTHO05D005998 7.6e-08 60.5 40 67.5
TWI38G1999 Tripterygium wilfordii HOM05D004920 ORTHO05D005998 9.9e-08 60.1 40 65.0
unitig_60.g25415 Utricularia gibba HOM05D004920 ORTHO05D005998 9.9e-08 60.1 40 65.0
EL10Ac1g01008 Beta vulgaris HOM05D004920 ORTHO05D005998 1.3e-07 59.7 40 70.0
Duzib235G1063 Durio zibethinus HOM05D004920 ORTHO05D005998 1.3e-07 59.7 40 62.5
FAN03G1929 Fragaria x ananassa HOM05D004920 ORTHO05D005998 1.3e-07 59.7 40 65.0
Hma1.2p1_0155F.1_g068520 Hydrangea macrophylla HOM05D004920 ORTHO05D005998 1.3e-07 59.7 40 65.0
PSO541G3866 Papaver somniferum HOM05D004920 ORTHO05D005998 1.3e-07 59.7 40 65.0
vmacro15953 Vaccinium macrocarpon HOM05D004920 ORTHO05D005998 1.3e-07 59.7 40 65.0
Carub.0005s0814 Capsella rubella HOM05D006007 ORTHO05D007518 1.7e-07 59.3 39 76.9
PSO675G0526 Papaver somniferum HOM05D004920 ORTHO05D005998 1.7e-07 59.3 40 65.0
Aa31LG2G3900 Aethionema arabicum HOM05D006007 ORTHO05D007518 2.2e-07 58.9 39 71.8
Thhalv10003901m.g Eutrema salsugineum HOM05D006007 ORTHO05D007518 2.2e-07 58.9 39 74.4
TAR624G0520 Trochodendron aralioides HOM05D004920 ORTHO05D005998 2.2e-07 58.9 40 65.0
CDE02G3849 Ceratophyllum demersum HOM05D004920 ORTHO05D005998 3.8e-07 58.2 40 62.5
TAR626G0293 Trochodendron aralioides HOM05D004920 ORTHO05D005998 4.9e-07 57.8 40 65.0
FAN25G0865 Fragaria x ananassa HOM05D004920 ORTHO05D005998 6.4e-07 57.4 40 62.5
PSO063G1259 Papaver somniferum HOM05D004920 ORTHO05D005998 1.4e-06 56.2 40 57.5
HPP92_018237 Vanilla planifolia HOM05D004920 ORTHO05D005998 1.4e-06 56.2 40 60.0
BcaC03g17580 Brassica carinata HOM05D006007 ORTHO05D007518 4.2e-06 54.7 40 80.0
C02p55600 Brassica napus HOM05D006007 ORTHO05D007518 4.2e-06 54.7 40 80.0
BolC2t11616H Brassica oleracea HOM05D006007 ORTHO05D007518 4.2e-06 54.7 40 80.0
FAN21G0445 Fragaria x ananassa HOM05D004920 ORTHO05D005998 5.4e-06 54.3 40 60.0
Sed0013972 Sechium edule HOM05D004920 ORTHO05D005998 7.1e-06 53.9 40 62.5


User provided reference genes

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