Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p13130 Brassica napus HOM05D004887 ORTHO05D006168 3.4e-189 664.8 340 100.0
A03p11380 Brassica napus HOM05D004887 ORTHO05D006168 3.5e-32 143.3 87 83.9
Thhalv10013947m.g Eutrema salsugineum HOM05D004887 ORTHO05D006168 5.0e-31 139.4 94 77.7
BcaB08g36206 Brassica carinata HOM05D004887 ORTHO05D006168 6.6e-31 139.0 97 75.3
BcaC04g19652 Brassica carinata HOM05D004887 ORTHO05D006168 2.5e-30 137.1 94 76.6
A10p17180 Brassica napus HOM05D004887 ORTHO05D006168 2.5e-30 137.1 94 76.6
C09p52470 Brassica napus HOM05D004887 ORTHO05D006168 2.5e-30 137.1 94 76.6
BolC9t58114H Brassica oleracea HOM05D004887 ORTHO05D006168 2.5e-30 137.1 94 76.6
BraA10t43799Z Brassica rapa HOM05D004887 ORTHO05D006168 2.5e-30 137.1 94 76.6
Sp6g21640 Schrenkiella parvula HOM05D004887 ORTHO05D006168 2.5e-30 137.1 94 76.6
AL781U10010 Arabidopsis lyrata HOM05D004887 ORTHO05D006168 3.3e-30 136.7 95 75.8
AL8G36530 Arabidopsis lyrata HOM05D004887 ORTHO05D006168 3.3e-30 136.7 95 75.8
AT5G59960 Arabidopsis thaliana HOM05D004887 ORTHO05D006168 3.3e-30 136.7 95 75.8
CARHR273600 Cardamine hirsuta HOM05D004887 ORTHO05D006168 3.3e-30 136.7 95 75.8
Aa31LG1G12090 Aethionema arabicum HOM05D004887 ORTHO05D006168 6.1e-29 132.5 95 73.7
THA.LOC104799466 Tarenaya hassleriana HOM05D004887 ORTHO05D006168 1.3e-26 124.8 95 67.4
VMungo1127G0043 Vigna mungo HOM05D004887 ORTHO05D006168 7.8e-24 115.5 109 57.8
Glyma.11G141400 Glycine max HOM05D004887 ORTHO05D006168 1.0e-23 115.2 109 57.8
CANSAT54G1644 Cannabis sativa HOM05D004887 ORTHO05D006168 1.7e-23 114.4 95 62.1
Phvul.011G065900 Phaseolus vulgaris HOM05D004887 ORTHO05D006168 2.3e-23 114.0 109 56.9
TPR.G10217 Trifolium pratense HOM05D004887 ORTHO05D006168 3.0e-23 113.6 109 56.9
Medtr4g063570 Medicago truncatula HOM05D004887 ORTHO05D006168 6.6e-23 112.5 109 55.0
Ca_19183_v3 Cicer arietinum L. HOM05D004887 ORTHO05D006168 1.1e-22 111.7 109 56.9
Hma1.2p1_0624F.1_g191380 Hydrangea macrophylla HOM05D004887 ORTHO05D006168 1.5e-22 111.3 91 63.7
arahy.Tifrunner.gnm1.ann1.1V42NR Arachis hypogaea HOM05D004887 ORTHO05D006168 1.9e-22 110.9 114 53.5
arahy.Tifrunner.gnm1.ann1.31UC9J Arachis hypogaea HOM05D004887 ORTHO05D006168 1.9e-22 110.9 114 53.5
Atru.chr3.3838 Acer truncatum HOM05D004887 ORTHO05D006168 2.5e-22 110.5 95 62.1
PGR102G2111 Punica granatum HOM05D004887 ORTHO05D006168 2.5e-22 110.5 95 61.1
Lj3g0008400 Lotus japonicus HOM05D004887 ORTHO05D006168 3.3e-22 110.2 109 54.1
vmacro03096 Vaccinium macrocarpon HOM05D004887 ORTHO05D006168 4.3e-22 109.8 99 56.6
CSS0023093 Camellia sinensis var. sinensis HOM05D004887 ORTHO05D006168 5.6e-22 109.4 94 61.7
Sabra09G0019700 Salix brachista HOM05D004887 ORTHO05D006168 5.6e-22 109.4 103 58.3
Glyma.12G064800 Glycine max HOM05D004887 ORTHO05D006168 9.5e-22 108.6 109 56.0
MD11G1143700 Malus domestica HOM05D004887 ORTHO05D006168 9.5e-22 108.6 95 58.9
Manes.04G032300 Manihot esculenta HOM05D004887 ORTHO05D006168 1.6e-21 107.8 112 53.6
Rhsim13G0085300 Rhododendron simsii HOM05D001446 ORTHO05D001360 1.6e-21 107.8 94 57.4
THA.LOC104810819 Tarenaya hassleriana HOM05D004887 ORTHO05D006168 1.6e-21 107.8 95 58.9
Gohir.A03G039700 Gossypium hirsutum HOM05D004887 ORTHO05D006168 2.1e-21 107.5 95 57.9
Gohir.D03G128400 Gossypium hirsutum HOM05D004887 ORTHO05D006168 2.1e-21 107.5 95 57.9
MD03G1097100 Malus domestica HOM05D004887 ORTHO05D006168 2.1e-21 107.5 95 58.9
Potri.001G237000 Populus trichocarpa HOM05D004887 ORTHO05D006168 2.1e-21 107.5 98 60.2
Gorai.003G135100 Gossypium raimondii HOM05D004887 ORTHO05D006168 2.8e-21 107.1 95 57.9
Haze_24049 Corylus avellana HOM05D004887 ORTHO05D006168 3.6e-21 106.7 95 62.1
Cfa011464 Carpinus fangiana HOM05D004887 ORTHO05D006168 4.7e-21 106.3 92 63.0
Duzib168G0637 Durio zibethinus HOM05D004887 ORTHO05D006168 4.7e-21 106.3 95 58.9
Potri.009G028500 Populus trichocarpa HOM05D004887 ORTHO05D006168 4.7e-21 106.3 98 58.2
Prupe.6G081500 Prunus persica HOM05D004887 ORTHO05D006168 4.7e-21 106.3 114 53.5
Cpa.g.sc190.13 Carica papaya HOM05D004887 ORTHO05D006168 8.0e-21 105.5 95 57.9
Duzib150G1309 Durio zibethinus HOM05D004887 ORTHO05D006168 1.0e-20 105.1 95 57.9
Eucgr.B02388 Eucalyptus grandis HOM05D004887 ORTHO05D006168 1.8e-20 104.4 98 58.2
PSO339G5095 Papaver somniferum HOM05D004887 ORTHO05D006168 1.8e-20 104.4 102 55.9
CAN.G661.4 Capsicum annuum HOM05D004887 ORTHO05D006168 2.3e-20 104.0 97 53.6
Ciclev10028710m.g Citrus clementina HOM05D004887 ORTHO05D006168 2.3e-20 104.0 103 55.3
Dinv03548 Davidia involucrata HOM05D004887 ORTHO05D006168 3.1e-20 103.6 94 60.6
Dinv32870 Davidia involucrata HOM05D004887 ORTHO05D006168 4.0e-20 103.2 94 58.5
PSO384G2944 Papaver somniferum HOM05D004887 ORTHO05D006168 4.0e-20 103.2 102 55.9
Sabra16G0142900 Salix brachista HOM05D001446 ORTHO05D001360 4.0e-20 103.2 95 60.0
CiPaw.13G097700 Carya illinoinensis HOM05D004887 ORTHO05D006168 5.2e-20 102.8 95 57.9
SGA_v2.0_scaffold61G21266 Striga asiatica HOM05D004887 ORTHO05D006168 5.2e-20 102.8 94 59.6
arahy.Tifrunner.gnm1.ann1.LTG2DU Arachis hypogaea HOM05D004887 ORTHO05D006168 6.8e-20 102.4 109 49.5
Duzib170G0837 Durio zibethinus HOM05D004887 ORTHO05D006168 6.8e-20 102.4 97 59.8
Actinidia07046 Actinidia chinensis HOM05D004887 ORTHO05D006168 8.9e-20 102.1 94 57.4
COL.COLO4_18471 Corchorus olitorius HOM05D004887 ORTHO05D006168 8.9e-20 102.1 95 56.8
Manes.11G133000 Manihot esculenta HOM05D004887 ORTHO05D006168 8.9e-20 102.1 98 58.2
TAR623G0510 Trochodendron aralioides HOM05D004887 ORTHO05D006168 1.5e-19 101.3 93 60.2
QL01p032955 Quercus lobata HOM05D004887 ORTHO05D006168 2.0e-19 100.9 95 56.8
GSVIVG01025008001 Vitis vinifera HOM05D004887 ORTHO05D006168 2.0e-19 100.9 95 56.8
RcHm_v2.0_Chr5g0063631 Rosa chinensis HOM05D004887 ORTHO05D006168 2.6e-19 100.5 95 60.0
Actinidia37217 Actinidia chinensis HOM05D004887 ORTHO05D006168 4.4e-19 99.8 94 57.4
CsaV3_1G033620 Cucumis sativus L. HOM05D004887 ORTHO05D006168 4.4e-19 99.8 95 54.7
MBI14_g18541_MAGBIO Magnolia biondii HOM05D004887 ORTHO05D006168 4.4e-19 99.8 95 58.9
Aqoxy4G02983 Aquilegia oxysepala HOM05D004887 ORTHO05D006168 5.8e-19 99.4 97 56.7
Lalb_Chr01g0003761 Lupinus albus HOM05D004887 ORTHO05D006168 5.8e-19 99.4 114 50.9
Thecc.09G325700 Theobroma cacao HOM05D004887 ORTHO05D006168 5.8e-19 99.4 95 56.8
ClCG03G001950 Citrullus lanatus HOM05D004887 ORTHO05D006168 9.8e-19 98.6 94 54.3
FAN25G2556 Fragaria x ananassa HOM05D004887 ORTHO05D006168 9.8e-19 98.6 95 57.9
Lsat_1_v5_gn_8_77921 Lactuca sativa HOM05D004887 ORTHO05D006168 9.8e-19 98.6 87 57.5
TAR369G0226 Trochodendron aralioides HOM05D004887 ORTHO05D006168 9.8e-19 98.6 94 55.3
Cc01_g12500 Coffea canephora HOM05D004887 ORTHO05D006168 1.3e-18 98.2 94 54.3
DCAR_018895 Daucus carota HOM05D004887 ORTHO05D006168 1.3e-18 98.2 98 52.0
Nitab4.5_0000610g0150 Nicotiana tabacum HOM05D004887 ORTHO05D006168 1.3e-18 98.2 95 54.7
TWI31G1179 Tripterygium wilfordii HOM05D004887 ORTHO05D006168 1.3e-18 98.2 95 54.7
SalBow3G3342 Salvia bowleyana HOM05D004887 ORTHO05D006168 1.7e-18 97.8 117 47.9
Solyc11g073300.2 Solanum lycopersicum HOM05D004887 ORTHO05D006168 1.7e-18 97.8 94 53.2
Migut.D02114 Erythranthe guttata HOM05D004887 ORTHO05D006168 2.2e-18 97.4 94 53.2
Migut.G01105 Erythranthe guttata HOM05D004887 ORTHO05D006168 2.2e-18 97.4 94 53.2
Migut.G01142 Erythranthe guttata HOM05D004887 ORTHO05D006168 2.2e-18 97.4 94 53.2
FvH4_3g35470 Fragaria vesca HOM05D004887 ORTHO05D006168 2.2e-18 97.4 95 58.9
FAN11G2539 Fragaria x ananassa HOM05D004887 ORTHO05D006168 2.2e-18 97.4 95 58.9
FAN16G2077 Fragaria x ananassa HOM05D001446 ORTHO05D001360 2.2e-18 97.4 95 58.9
FAN21G1310 Fragaria x ananassa HOM05D004887 ORTHO05D006168 2.2e-18 97.4 95 58.9
Sopen11g030920 Solanum pennellii HOM05D004887 ORTHO05D006168 2.2e-18 97.4 94 52.1
Gorai.004G004400 Gossypium raimondii HOM05D004887 ORTHO05D006168 2.9e-18 97.1 94 54.3
Lj1A157T41 Lonicera japonica HOM05D004887 ORTHO05D006168 4.9e-18 96.3 99 51.5
Sc21g0005570 Simmondsia chinensis HOM05D004887 ORTHO05D006168 1.4e-17 94.7 100 49.0
Gohir.D08G010900 Gossypium hirsutum HOM05D004887 ORTHO05D006168 1.9e-17 94.4 94 53.2
HanXRQChr06g0175771 Helianthus annuus HOM05D004887 ORTHO05D006168 1.9e-17 94.4 92 56.5
EL10Ac7g15978 Beta vulgaris HOM05D004887 ORTHO05D006168 4.1e-17 93.2 94 53.2
Psat7g218000 Pisum sativum HOM05D004887 ORTHO05D006168 5.4e-17 92.8 70 60.0
AUR62001822 Chenopodium quinoa HOM05D004887 ORTHO05D006168 7.0e-17 92.4 94 53.2
Hund18927 Selenicereus undatus HOM05D004887 ORTHO05D006168 7.0e-17 92.4 95 53.7
Psat7g218040 Pisum sativum HOM05D004887 ORTHO05D006168 9.2e-17 92.0 49 81.6
AUR62009609 Chenopodium quinoa HOM05D004887 ORTHO05D006168 1.2e-16 91.7 94 51.1
TWI79G0894 Tripterygium wilfordii HOM05D004887 ORTHO05D006168 1.2e-16 91.7 62 71.0
HPP92_015526 Vanilla planifolia HOM05D004887 ORTHO05D006168 1.2e-16 91.7 102 49.0
Nn2g10420 Nelumbo nucifera HOM05D004887 ORTHO05D006168 2.7e-16 90.5 84 56.0
HanXRQChr04g0107001 Helianthus annuus HOM05D004887 ORTHO05D006168 3.5e-16 90.1 94 52.1
ATR0559G318 Amborella trichopoda HOM05D004887 ORTHO05D006168 4.6e-16 89.7 95 51.6
MSTRG.17840 Avicennia marina HOM05D004887 ORTHO05D006168 4.6e-16 89.7 94 51.1
ECA247G3571 Erigeron canadensis HOM05D004887 ORTHO05D006168 4.6e-16 89.7 94 52.1
Lsat_1_v5_gn_9_22360 Lactuca sativa HOM05D004887 ORTHO05D006168 7.8e-16 89.0 94 51.1
Migut.N02667 Erythranthe guttata HOM05D004887 ORTHO05D006168 1.0e-15 88.6 94 48.9
Oeu041027.1 Olea europaea HOM05D004887 ORTHO05D006168 1.0e-15 88.6 94 51.1
Zm00001eb124290 Zea mays HOM05D004887 ORTHO05D006168 1.3e-15 88.2 89 51.7
Gohir.A08G000181 Gossypium hirsutum HOM05D004887 ORTHO05D006168 2.3e-15 87.4 86 53.5
unitig_899.g14894 Utricularia gibba HOM05D004887 ORTHO05D006168 3.9e-15 86.7 104 45.2
Sed0009981 Sechium edule HOM05D004887 ORTHO05D006168 5.0e-15 86.3 50 74.0
PSO384G0451 Papaver somniferum HOM05D004887 ORTHO05D006168 6.6e-15 85.9 56 71.4
Os01g0151600 Oryza sativa ssp. japonica HOM05D004887 ORTHO05D006168 8.6e-15 85.5 95 49.5
Nn2g12934 Nelumbo nucifera HOM05D004887 ORTHO05D006168 1.1e-14 85.1 86 52.3
CDE07G1169 Ceratophyllum demersum HOM05D004887 ORTHO05D006168 1.9e-14 84.3 100 45.0
Peaxi162Scf00406g00137 Petunia axillaris HOM05D004887 ORTHO05D006168 2.5e-14 84.0 86 50.0
MELO3C020709.2 Cucumis melo HOM05D004887 ORTHO05D006168 4.3e-14 83.2 47 76.6
Mapoly0001s0555 Marchantia polymorpha HOM05D004887 ORTHO05D006168 1.6e-13 81.3 98 44.9
SalBow2G3032 Salvia bowleyana HOM05D004887 ORTHO05D006168 2.1e-13 80.9 92 50.0
arahy.Tifrunner.gnm1.ann1.RHUE9Y Arachis hypogaea HOM05D004887 ORTHO05D006168 8.1e-13 79.0 49 65.3
Pp3c24_20310 Physcomitrium patens HOM05D004887 ORTHO05D006168 1.5e-11 74.7 119 39.5
Pp3c8_24390 Physcomitrium patens HOM05D004887 ORTHO05D006168 5.8e-11 72.8 119 37.0
CBR_g46654 Chara braunii HOM05D004887 ORTHO05D006168 6.4e-10 69.3 96 36.5
Psat7g217880 Pisum sativum HOM05D004887 ORTHO05D006168 2.1e-08 64.3 104 43.3
SMO118G0033 Selaginella moellendorffii HOM05D004887 ORTHO05D006168 3.5e-08 63.5 98 35.7
AagrBONN_evm.TU.Sc2ySwM_344.5355 Anthoceros agrestis HOM05D004887 ORTHO05D006168 1.0e-07 62.0 47 53.2
Nitab4.5_0003782g0060 Nicotiana tabacum HOM05D004887 ORTHO05D006168 1.5e-06 58.2 75 44.0


User provided reference genes

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